- c -
- c_str()
: CLocaleString
- calcCov()
: CFitProblem
- calcEigen()
: CFitProblem
- calcEigenValues()
: CEigen
- calcFIM()
: CFitProblem
- calcForces()
: CLayoutEngine
- calcFValVariance()
: COptMethodPS
- calcPartialFIM()
: CFitProblem
- calcr()
: COptMethodNL2SOL
- calcRHS()
: CLayoutEngine
- calculate()
: CBitPatternMethod
, CBitPatternTreeMethod
, CEFMAlgorithm
, CEFMMethod
, CEvaluationNode
, CEvaluationNodeCall
, CEvaluationNodeChoice
, CEvaluationNodeFunction
, CEvaluationNodeLogical
, CEvaluationNodeOperator
, CEvaluationNodeVariable
, CEvaluationTree
, CFitProblem
, CLyapMethod
, CLyapWolfMethod
, CMetab
, CModelEntity
, COptProblem
, CReaction
, CRealProblem
, CScanMethod
, CSSAMethod
, ValueScale
- calculate_cubicbezier()
: CLLayoutRenderer
- calculate_dAssignments_dPar()
: CTimeSensMethod
- calculate_dAssignments_dState()
: CTimeSensMethod
- calculate_difference()
: CSensMethod
- calculate_dInitialState_dPar()
: CTimeSensMethod
- calculate_dRate_dPar()
: CTimeSensMethod
- calculate_intersection()
: CLLayoutRenderer
- calculate_intersection_point_2d()
: CLLayoutRenderer
- calculate_one_level()
: CSensMethod
- calculateAbsoluteValue()
: CCellDesignerImporter
- calculateAndAssignBounds()
: CLayout
- calculateBoundingBox()
: CLayout
, CLCurve
- calculateCombinations()
: CEFMAlgorithm
- calculateConstraintViolation()
: CFitConstraint
- calculateCorrectedPropensity()
: CMathObject
- calculateCovarianceMatrixFull()
: CLNAMethod
- calculateCovarianceMatrixReduced()
: CLNAMethod
- calculateCrossValidation()
: CFitProblem
- calculateCurrentRoots()
: CRootFinder
- calculateDelayValues()
: CMathDelay
- calculateDerivative()
: CHybridMethod
- calculateDerivatives()
: CTSSAMethod
- calculateDerivativesX()
: CNewtonMethod
- calculateElasticityDependencies()
: CMathContainer
- calculateExpression()
: CMathObject
- calculateExtensiveReactionRate()
: CMathObject
- calculateExtensiveValue()
: CMathObject
- calculateFluxModes()
: CEFMAlgorithm
- calculateIntensiveValue()
: CMathObject
- calculateJacobian()
: CCSPMethod
, CMathContainer
, CSteadyStateMethod
- calculateJacobianDependencies()
: CMathContainer
- calculateJit()
: CJitExpression
- calculateNextTableau()
: CEFMAlgorithm
- calculateParticleFlux()
: CMathObject
- calculatePropensities()
: CTrajectoryMethodDsaLsodar
- calculatePropensity()
: CMathObject
- calculateRootDerivatives()
: CMathContainer
- calculateRootJacobian()
: CMathContainer
- calculateSmallestPhysicalValue()
: CStochasticRungeKuttaRI5
- calculateStateVariables()
: CStochasticRungeKuttaRI5
- calculateStatistics()
: CExperiment
, CExperimentSet
, CFitProblem
, COptProblem
, CSBMLunitInterface
- calculateTotalPropensity()
: CTrajectoryMethodDsaLsodar
- calculateTransitionTime()
: CMathObject
- calculateTrueValue()
: CMathEvent::CTrigger::CRootProcessor
- calculateUnscaledConcentrationCC()
: CMCAMethod
- calculateUnscaledElasticities()
: CMCAMethod
- calculateUnscaledFluxCC()
: CMCAMethod
- calculateValue()
: CCopasiTimer
, CDataObject
, CMathObject
, CObjectInterface
, COptItem
, COptProblem
- calculateWeights()
: CExperiment
- calculationsBeforeOutput()
: CLyapTask
- calcValue()
: CExpression
, CFunction
, CMassAction
- calcVariableVariance()
: COptMethodPS
- calls()
: CEvaluationNodeCall
, CEvaluationTree
- canCalculateValue()
: CMathObject
- canRedo()
: CUndoStack
- canUndo()
: CUndoStack
- castObject()
: CAnnotation
- CCallback()
: CCallback< Callee >
- CCallParameters()
: CCallParameters< Type >
- CCellDesignerImporter()
: CCellDesignerImporter
- CChangeSet()
: CUndoData::CChangeSet
- CCheckForUpdates()
: CCheckForUpdates
- CChemEq()
: CChemEq
- CChemEqElement()
: CChemEqElement
- CChemEqInterface()
: CChemEqInterface
- CChemEqParser()
: CChemEqParser
- CChemEqParserBase()
: CChemEqParserBase
- CCommonName()
: CCommonName
- CCompartment()
: CCompartment
- CCompressedColumnFormat()
: CCompressedColumnFormat
- CConfigurationFile()
: CConfigurationFile
- CContent()
: CDataModel::CContent
- CContext()
: CContext< Data >
- CCreator()
: CCreator
- CCrossSectionMethod()
: CCrossSectionMethod
- CCrossSectionProblem()
: CCrossSectionProblem
- CCrossSectionTask()
: CCrossSectionTask
- CCrossValidationSet()
: CCrossValidationSet
- CCSPMethod()
: CCSPMethod
- change()
: CUndoData
- change_style()
: CLLayoutRenderer
- changed()
: CDataModel
- changeModel()
: CFixLocalReactionParameters
- changeModelParameter()
: CDataModel
- changeSymbol()
: CUnitDefinitionDB
- changeUnitExpressionSymbols()
: CModel
- changeVariables()
: CSensProblem
- characterDataHandler()
: CExpatTemplate< CType >
- characters()
: CStructureParser
- checkCallParameters()
: CFunctionParameterMap
- checkConstraint()
: CFitConstraint
, CFitItem
, COptItem
- checkElementUnits()
: SBMLUnitSupport
- checkForEvents()
: CSBMLExporter
- checkForInitialAssignments()
: CSBMLExporter
- checkForMessage()
: CCopasiMessage
- checkForODESpeciesInNonfixedCompartment()
: CSBMLExporter
- checkForPiecewiseFunctions()
: CSBMLExporter
- checkForSpatialSizeUnits()
: SBMLUnitSupport
- checkForUnitsOnNumbers()
: SBMLImporter
- checkForUnsupportedFunctionCalls()
: CSBMLExporter
- checkForUnsupportedObjectReferences()
: CSBMLExporter
- checkFunctionalConstraints()
: CFitProblem
, COptProblem
- checkInterval()
: COptItem
- checkIntervals()
: COptProblem
- checkIsInitialValue()
: COptItem
- checkKineticFunction()
: CFunctionAnalyzer
- checkLinkAnchor()
: CCellDesignerImporter
- checkLinkAnchors()
: CCellDesignerImporter
- checkLowerBound()
: COptItem
- checkModel()
: CFixLocalReactionParameters
, CHybridMethod
, CHybridMethodODE45
, CModelAnalyzer
, CStochMethod
- checkODEState()
: CRungeKutta
- checkParameter()
: CRungeKutta
- checkParametricConstraints()
: COptProblem
- checkReaction()
: CModelAnalyzer
- checkRequired()
: CCheckForUpdates
- checkRoots()
: CHybridMethodODE45
, CRootFinder
, CRungeKutta
, CStochDirectMethod
- checkRuleMathConsistency()
: SBMLImporter
- checkSummationTheorems()
: CMCAMethod
- checkUpperBound()
: COptItem
- checkValidityOfSourceDocument()
: SBMLImporter
- childLocalMin()
: COptMethodSS
- classToEnum()
: CCellDesignerImporter
- clean()
: CRDFGraph
- cleanString()
: CCellDesignerImporter
- cleanup()
: CChemEq
, CChemEqElement
, CCompartment
, CCopasiTask
, CDataHandler
, CDataVector< CType >
, CEigen
, CEvent
, CFitTask
, CFunctionDB
, CFunctionParameter
, CFunctionParameters
, CHybridMethod
, CKinFunction
, CLNATask
, CLyapTask
, CMCATask
, CMetab
, CMetabOld
, CMoiety
, CNewtonMethod
, CNodeK
, COptions
, COptMethod
, COptMethodCoranaWalk
, COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHookeJeeves
, COptMethodLevenbergMarquardt
, COptMethodNelderMead
, COptMethodNL2SOL
, COptMethodPraxis
, COptMethodPS
, COptMethodSA
, COptMethodSRES
, COptMethodSS
, COptMethodSteepestDescent
, COptMethodTruncatedNewton
, COptPopulationMethod
, COptTask
, COscillationMethod
, COscillationTask
, COutputDefinitionVector
, CPlotItem
, CPlotSpecification
, CReport
, CReportBody
, CReportDefinition
, CReportDefinitionVector
, CReportTable
, CScanTask
, CSensTask
, CSparseMatrix
, CSteadyStateTask
, CTimeSensTask
, CTrajectoryMethodDsaLsodar
, CTrajectoryTask
- cleanupNodes()
: CKinFunction
- cleanupScanItems()
: CScanMethod
- clear()
: CCallParameters< Type >
, CCopasiParameterGroup
, CData
, CDataObjectMap
, CDataVector< CType >
, CDependencyGraph
, CFunctionAnalyzer::Result
, CIndexedPriorityQueue
, CLCurve
, CMathDependencyGraph
, CMathUpdateSequence
, CModelParameterGroup
, CModelVersionHierarchy
, CTimeSeries
, CUndoData::CChangeSet
, CUndoData
, CUndoStack
, CValidity
- clear_cached_data()
: CLLayoutRenderer
- clearAll()
: CChemEqInterface
- clearCallBack()
: CCopasiMethod
, CCopasiProblem
, CCopasiTask
, CSBMLExporter
, SBMLImporter
, SEDMLImporter
- clearCallParameter()
: CFunctionParameterMap
- clearCallParameters()
: CFunctionParameterMap
- clearChemEquation()
: CReactionInterface
- clearData()
: CRDFObject
, CRDFSubject
- clearDeque()
: CCopasiMessage
- clearDocument()
: SEDMLImporter
- clearInvalidEntries()
: CBiologicalDescription
, CReference
- clearMaps()
: CSEDMLExporter
- clearModifiers()
: CChemEqInterface
- clearMoieties()
: CModel
- clearNames()
: CDataHandler
- clearNodes()
: CEvaluationTree
- clearParameterCNs()
: CTimeSensProblem
- clearParameters()
: CEvaluationNodeCall
- clearPivoting()
: CLinkMatrix
- clearSbmlIds()
: CModel
- clearScanItems()
: CScanProblem
- clearSelection()
: CLLayoutRenderer
- clearTargetCNs()
: CTimeSensProblem
- clearText()
: CLTextGlyph
- clone()
: Bar
, CLCompartmentGlyph
, CLGeneralGlyph
, CLGraphicalObject
, CLMetabGlyph
, CLMetabReferenceGlyph
, CLReactionGlyph
, CLReferenceGlyph
, CLTextGlyph
, ColumnScale
, RowScale
, ValueScale
- close()
: COutputInterface
, CReport
- closerChild()
: COptMethodSS
- closerRefSet()
: COptMethodSS
- cnToIndex()
: CDataArray
- col()
: CSparseMatrixElement
- collapsRequested()
: CSensProblem
- collectIds()
: CSBMLExporter
, SBMLUtils
- color()
: CLGradientStops
- cols()
: CMathHistoryCore
- colsAllocated()
: CMathHistoryCore
- combination()
: COptMethodSS
- combine()
: CBitPatternMethod
, CBitPatternTreeMethod
- combineMaps()
: SBMLDocumentLoader
- combineVersionProvenance()
: CProvenanceXMLWriter
- commentHandler()
: CExpatTemplate< CType >
- commonAfterLoad()
: CDataModel
- compact()
: CStepMatrix
- compare()
: CExperiment
- compareCol()
: CSparseMatrixElement
- compareRow()
: CSparseMatrixElement
- compareValue()
: COptions
, COptions::COptionValue
- compareWithModel()
: CModelParameterSet
- compartmentNameFromCN()
: CCommonName
- compile()
: CDataHandler
, CEvaluationNode
, CEvaluationNodeCall
, CEvaluationNodeChoice
, CEvaluationNodeDelay
, CEvaluationNodeFunction
, CEvaluationNodeLogical
, CEvaluationNodeObject
, CEvaluationNodeOperator
, CEvaluationNodeVariable
, CEvaluationTree
, CEvent
, CEventAssignment
, CExperiment
, CExperimentObjectMap
, CExperimentSet
, CExpression
, CFitItem
, CMassAction
, CMathContainer
, CMathEvent::CAssignment
, CMathEvent
, CMathEvent::CTrigger
, CMathEvent::CTrigger::CRootProcessor
, CMathExpression
, CMathObject
, CMetab
, CModel
, CModelEntity
, CModelParameter
, CModelParameterGroup
, CModelParameterReactionParameter
, CModelParameterSet
, CModelParameterSpecies
, COptItem
, COutputHandler
, COutputInterface
, CReaction
, CReport
, CSlider
, CTimeSeries
, CUnit
- compileAND()
: CMathEvent::CTrigger
- compileChildReport()
: CReport
- compileDependentMass()
: CMathObject
- compileDiscreteChanges()
: CMathContainer
- compileEQ()
: CMathEvent::CTrigger
- compileEvents()
: CMathContainer
, CModel
- compileExpression()
: CMathObject
- compileFlux()
: CMathObject
- compileFUNCTION()
: CMathEvent::CTrigger
- compileFunctionParameters()
: CReaction
- compileIfNecessary()
: CModel
- compileInitialValue()
: CMathObject
- compileIsInitialValueChangeAllowed()
: CMetab
- compileJit()
: CJitExpression
- compileLE()
: CMathEvent::CTrigger
- compileLowerBound()
: COptItem
- compileNE()
: CMathEvent::CTrigger
- compileNodes()
: CEvaluationTree
- compileNoise()
: CMathObject
- compileNOT()
: CMathEvent::CTrigger
- compileObjects()
: CMathContainer
- compileParticleFlux()
: CMathObject
- compilePattern()
: CDirEntry
- compilePropensity()
: CMathObject
- compileRate()
: CMathObject
- compileReactionNoise()
: CMathObject
- compileReactionParticleNoise()
: CMathObject
- compileTotalMass()
: CMathObject
- compileTransitionTime()
: CMathObject
- compileTree()
: CDerive
- compileUpdateSequence()
: COutputHandler
- compileUpperBound()
: COptItem
- compileValue()
: CMathObject
- compileVARIABLE()
: CMathEvent::CTrigger
- completeCompartments()
: CChemEqInterface
- completeFunctionList()
: CFunction
- completePivotInformation()
: CLinkMatrix
- computeSelectedStatistics()
: CAnalyticsTask
- configure()
: Bar
- confirmOverwrite()
: CReport
- conflict()
: CValidatedUnit
- connectFromScratch()
: CReactionInterface
- connectionPolicyToEnum()
: CCellDesignerImporter
- connectNonMetabolites()
: CReactionInterface
- const_iterator()
: CCopasiTree< _Node >::const_iterator
, CDataObjectMap::const_iterator
, CDataVector< CType >::const_iterator
- const_row_iterator()
: CCompressedColumnFormat::const_row_iterator
- const_type_iterator()
: CDataObjectMap::const_type_iterator< CType >
- constCast()
: CDataVector< CType >::const_iterator
- construct()
: CCommonName
- constructCallParameters()
: CFunctionAnalyzer
- constructCallParametersActualValues()
: CFunctionAnalyzer
- contains()
: CDataObjectMap
, CModelExpansion::SetOfModelElements
- containsCN()
: CEvaluationTree
- containsInvalid()
: CFunctionAnalyzer::CValue
- containsNaN()
: CNewtonMethod
- containsNegative()
: CFunctionAnalyzer::CValue
- containsPositive()
: CFunctionAnalyzer::CValue
- containsSymbol()
: CUnitDefinitionDB
- containsVolume()
: SBMLImporter
- containsZero()
: CFunctionAnalyzer::CValue
- contentType()
: CDataModel
- context()
: CNodeContextIterator< Node, Context >
- contextMenuEvent()
: CQBarChart
- convert()
: CMathMLToTeX
, CRDFGraphConverter
, CStepMatrixColumn
- convert2NonReversible()
: CModel
- convert_to_absolute()
: CLLayoutRenderer
- convert_to_l1v1()
: CSBMLExporter
- convert_to_model_space()
: CLLayoutRenderer
- convertASTTreeToLevel1()
: CSBMLExporter
- convertCellDesignerLayout()
: CCellDesignerImporter
- convertCompartmentAnnotations()
: CCellDesignerImporter
- convertGlobalToLocalStyle()
: CLRenderFlattener
- convertLayoutObjectIds()
: SBMLDocumentLoader
- convertLayoutObjectKeys()
: SBMLDocumentLoader
- convertPropertyIds()
: SBMLDocumentLoader
- convertReactionAnnotation()
: CCellDesignerImporter
- convertReactionAnnotations()
: CCellDesignerImporter
- convertRenderInformationReferencesIds()
: SBMLDocumentLoader
- convertRenderInformationReferencesKeys()
: SBMLDocumentLoader
- convertRow()
: CStepMatrix
- convertScaleNameToScale()
: CSlider
- convertScaleToScaleName()
: CSlider
- convertSimpleFunctionalRange()
: SEDMLImporter
- convertSpeciesAnnotations()
: CCellDesignerImporter
- convertToASTNode()
: CSBMLExporter
- convertToConcentration()
: CMetab
- convertToInitialExpression()
: CMathExpression
- convertToLevel1()
: CSBMLExporter
- convertToNumber()
: CMetab
- copasiNot()
: CEvaluationNodeFunction
- copy()
: CCopasiProblem
, CDirEntry
, CEvaluationTree
, CMathContainer
, CMathDelay
, CMathEvent::CAssignment
, CMathEvent
, CMathEvent::CTrigger
, CMathEvent::CTrigger::CRootProcessor
, CMathExpression
, CMathHistory
, CMathObject
, CMathReaction
, CMethodFactory
, CModelParameterGroup
, CProblemFactory
, CRandom
, CTaskFactory
, CVector< CType >
- copyBranch()
: CEvaluationNode
, CMathContainer
- copyBranch_var2obj()
: CDerive
- copyCompleteModel()
: CModelExpansion
- copyDelayExpression()
: CModelAdd
- copyEventAssignmentExpression()
: CModelAdd
- copyExperimentalDataTo()
: CDataModel
- copyExpression()
: CModelAdd
- copyInitialExpression()
: CModelAdd
- copyMapping()
: CReactionInterface
- copyNode()
: CEvaluationNode
- copyParameterGroupToSensItem()
: CSensProblem
- copySensItemToParameterGroup()
: CSensProblem
- copySensitivitiesToResultMatrix()
: CTimeSensLsodaMethod
, CTimeSensMethod
- copyTriggerExpression()
: CModelAdd
- correctErrorPosition()
: CChemEqParserBase
, CEvaluationParserBase
, CUnitParserBase
- cot()
: CEvaluationNodeFunction
- coth()
: CEvaluationNodeFunction
- countLines()
: CExperimentFileInfo
- countRoots()
: CMathEvent::CTrigger
- countRootsDefault()
: CMathEvent::CTrigger
- countRootsEQ()
: CMathEvent::CTrigger
- countRootsFUNCTION()
: CMathEvent::CTrigger
- countRootsVARIABLE()
: CMathEvent::CTrigger
- countSetBits()
: CZeroSet
- countVars()
: COptLogItem
- create()
: CEvaluationNode
, CEvaluationTree
, CExpatTemplate< CType >
, CJitCompiler
, CMathDelay
, CMethodFactory
, COptMethodPS
, CProblemFactory
, CTaskFactory
- create_gradient_texture()
: CLLayoutRenderer
- create_linear_gradient_texture()
: CLLayoutRenderer
- create_radial_gradient_texture()
: CLLayoutRenderer
- create_texture_for_image()
: CLSimpleImageTexturizer
- create_texture_for_jpeg_image()
: CLSimpleImageTexturizer
- create_texture_for_png_image()
: CLSimpleImageTexturizer
- createAboutNode()
: CRDFGraph
- createAllowedLocationsAbsolute()
: CRDFPredicate
- createAllowedLocationsRelative()
: CRDFPredicate
- createAmountMV()
: SEDMLUtils
- createAnnotationsM()
: CCSPMethod
, CILDMMethod
, CILDMModifiedMethod
, CTSSAMethod
- createApplyInitialValuesSequence()
: CMathContainer
- createAreaUnit()
: CSBMLExporter
- createAvogadroIfNeeded()
: CSBMLExporter
- createBiologicalDescription()
: CMIRIAMInfo
- createBiUniCurve()
: CCellDesignerImporter
- createBVarMap()
: SBMLImporter
- createCatalysisStyles()
: CCellDesignerImporter
- createCCompartmentFromCompartment()
: SBMLImporter
- createCFunctionFromFunctionDefinition()
: SBMLImporter
- createCFunctionFromFunctionTree()
: SBMLImporter
- createCMetabFromSpecies()
: SBMLImporter
- createCModelFromSBMLDocument()
: SBMLImporter
- createCModelValueFromParameter()
: SBMLImporter
- createColorDefinition()
: CLRenderInformationBase
- createCompartment()
: CModel
, CSBMLExporter
- createCompartmentGlyph()
: CCellDesignerImporter
, CLayoutInitializer
- createCompartmentGlyphs()
: CCellDesignerImporter
- createCompartments()
: CSBMLExporter
- createCompartmentStyle()
: CCellDesignerImporter
- createConvertedExpression()
: CMathObject
- createCopy()
: CFunction
- createCReactionFromReaction()
: SBMLImporter
- createCreator()
: CMIRIAMInfo
- createCubicBezier()
: CLPolygon
, CLRenderCurve
- createCurve()
: CLGroup
- createDataGenerator()
: CSEDMLExporter
- createDataGenerators()
: CSEDMLExporter
- createDefaultActivatorStyle()
: CCellDesignerImporter
- createDefaultInhibitorStyle()
: CCellDesignerImporter
- createDefaultModifierStyle()
: CCellDesignerImporter
- createDefaultOutput()
: COutputAssistant
- createDefaultPlot()
: CPlotSpecification
- createDefaultProductStyle()
: CCellDesignerImporter
- createDefaultReactionGlyphStyle()
: CCellDesignerImporter
- createDefaultStyles()
: CCellDesignerImporter
- createDefaultSubstrateStyle()
: CCellDesignerImporter
- createDelayFunctionDefinition()
: SBMLImporter
- createDelays()
: CMathContainer
- createDependencyGraphs()
: CMathContainer
- createDiffusionReaction()
: CModelExpansion
- createDir()
: CDirEntry
- createDiscontinuityDataEvent()
: CMathContainer
- createDiscontinuityEvents()
: CMathContainer
- createDiscontinuityTriggerInfix()
: CMathContainer
- createDisplayName()
: CDataArray
- createDisplayName2Predicate()
: CRDFPredicate
- createDisplayNameMap()
: CMIRIAMResources
- createEllipse()
: CLGroup
- createEvent()
: CAnalyticsTask
, CCrossSectionTask
, CModel
, CSBMLExporter
- createEvents()
: CSBMLExporter
- createEventsForTimeseries()
: CModel
- createExpressionFromFunction()
: SBMLImporter
- createExtensiveNoiseExpression()
: CMathObject
- createExtensiveODERateExpression()
: CMathObject
- createExtensiveReactionNoiseExpression()
: CMathObject
- createExtensiveReactionRateExpression()
: CMathObject
- createExtensiveValueExpression()
: CMathObject
- createFromModel()
: CModelParameterSet
- createFunctionDefinition()
: CSBMLExporter
- createFunctionDefinitions()
: CSBMLExporter
- createFunctionFromExpression()
: CReaction
- createFunctionSetFromFunctionNames()
: CSBMLExporter
- createGenerator()
: CRandom
- createGLMatrix()
: CLLayoutRenderer
- createGradientStop()
: CLGradientBase
- createGroup()
: CLGroup
- createHandler()
: CXMLHandlerFactory
- createHasOnlySubstanceUnitFactor()
: SBMLImporter
- createIdentifiersOrgURL()
: CMIRIAMResource
- createIdMap()
: CSBMLExporter
- createImage()
: CLGroup
- createInitialAssignment()
: CSBMLExporter
- createInitialAssignments()
: CSBMLExporter
- createInitialExpression()
: CExpression
- createIntensiveNoiseExpression()
: CMathObject
- createIntensiveRateExpression()
: CMathObject
- createIntensiveValueExpression()
: CMathObject
- createItem()
: CPlotSpecification
- createKineticExpression()
: CSBMLExporter
- createKineticLaw()
: CSBMLExporter
- createLayout()
: CCopasiSpringLayout
, SBMLDocumentLoader
- createLengthUnit()
: CSBMLExporter
- createLinearArray()
: CModelExpansion
- createLinearGradientDefinition()
: CLRenderInformationBase
- createLineEnding()
: CLRenderInformationBase
- createLineSegments()
: CCellDesignerImporter
- createLineStippleTexture()
: CLLayoutRenderer
- createLinkMatrix()
: CMCAMethod
- createListOfParametersForMathML()
: CFunction
- createMassActionExpression()
: CSBMLExporter
- createMassActionPart()
: CMathExpression
- createMessage()
: CMathDependencyNode
- createMetabGlyph()
: CLayoutInitializer
- createMetabolite()
: CModel
, CSBMLExporter
- createMetabolites()
: CReactionInterface
, CSBMLExporter
- createMissingAncestors()
: CRDFNode
- createModel()
: CSEDMLExporter
- createModelValue()
: CModel
- createModification()
: CMIRIAMInfo
- createModuloTree()
: CEvaluationNodeOperator
- createNodeFromObject()
: CMathContainer
- createNodeFromValue()
: CMathContainer
, CMathExpression
- createNonExistingMetabs()
: CChemEqInterface
- createObjectiveFunction()
: CFitProblem
- createOrthogonal()
: CCellDesignerImporter
- createOtherObjects()
: CReactionInterface
- createParameter()
: CSBMLExporter
- createParameterMapping()
: CMMLOutput
- createParameters()
: CKinFunction
, CSBMLExporter
- createParameterSet()
: CFitProblem
- createParameterSets()
: CFitProblem
- createParametersInGroup()
: CSensProblem
- createPlot()
: COutputAssistant
- createPlotSpec()
: COutputDefinitionVector
- createPoint()
: CLPolygon
, CLRenderCurve
- createPolygon()
: CLGroup
- createPrimitive()
: CCellDesignerImporter
- createProduct()
: CCellDesignerImporter
- createProgressStepOrStop()
: CSBMLExporter
, SBMLImporter
- createProteinModification()
: CCellDesignerImporter
- createRadialGradientDefinition()
: CLRenderInformationBase
- createReaction()
: CModel
, CSBMLExporter
- createReactionGlyph()
: CLayoutInitializer
- createReactions()
: CSBMLExporter
- createRectangle()
: CLGroup
- createRectangularArray()
: CModelExpansion
- createReference()
: CMIRIAMInfo
- createRelocation()
: CMathContainer
- createRelocations()
: CMathContainer
- createRenderInformation()
: CXMLParserData
- createReportDefinition()
: CReportDefinitionVector
- createRootMask()
: CHybridMethodODE45
, CLsodaMethod2
, CLsodaMethod
, CRadau5Method
, CStochasticRungeKuttaRI5
, CTimeSensLsodaMethod
- createRule()
: CSBMLExporter
- createRules()
: CSBMLExporter
- createSBMLDocument()
: CSBMLExporter
- createSBMLNotes()
: CSBMLExporter
- createScanItem()
: CScanProblem
- createScanItemFromParameterGroup()
: CScanItem
- createScanTask()
: CSEDMLExporter
- createSEDMLDocument()
: CSEDMLExporter
- createSpeciesGlyph()
: CCellDesignerImporter
- createSpeciesGlyphs()
: CCellDesignerImporter
- createSpeciesReferenceGlyphs()
: CCellDesignerImporter
- createSpeciesStyles()
: CCellDesignerImporter
- createSteadyStateTask()
: CSEDMLExporter
- createStringFromSet()
: CLStyle
- createStyle()
: CLGlobalRenderInformation
, CLLocalRenderInformation
, CLRenderInformationBase
- createStyleFromLine()
: CCellDesignerImporter
- createSubstanceUnit()
: CSBMLExporter
- createSubstrate()
: CCellDesignerImporter
- createSynchronizeInitialValuesSequence()
: CMathContainer
- createTable()
: COutputAssistant
- createTasks()
: CSEDMLExporter
- createText()
: CLGroup
- createTextGlyphStyle()
: CCellDesignerImporter
- createTimeCourseTask()
: CSEDMLExporter
- createTimesTree()
: CSBMLExporter
- createTimeUnit()
: CSBMLExporter
- createTmpName()
: CDirEntry
- createTriggerExpressionNode()
: CMathEvent::CTrigger::CRootProcessor
- createUndoData()
: CAnnotation
, CBiologicalDescription
, CCompartment
, CCopasiParameter
, CCopasiParameterGroup
, CCopasiTask
, CCreator
, CDataContainer
, CDataObject
, CDataVector< CType >
, CDataVectorN< CType >
, CEvent
, CEventAssignment
, CFunction
, CMetab
, CMIRIAMInfo
, CModel
, CModelEntity
, CModelParameter
, CModelParameterGroup
, CModelParameterSet
, CModelParameterSpecies
, CModelValue
, CModification
, CReaction
, CReactionInterface
, CReference
, CReportDefinition
, CUndoObjectInterface
, CUnitDefinition
- createUniBiCurve()
: CCellDesignerImporter
- createUniqueDisplayName()
: CMetabNameInterface
- createUniqueId()
: CCellDesignerImporter
, CSBMLExporter
- createUniqueName()
: CDataVectorN< CType >
- createUnitDefinitionFor()
: CSBMLExporter
- createUnitExpressionFor()
: SBMLUnitSupport
- createUnits()
: CSBMLExporter
- createUniUniCurve()
: CCellDesignerImporter
- createUnsupportedFunctionTypeSet()
: CSBMLExporter
- createUpdateAllTransientDataValuesSequence()
: CMathContainer
- createUpdateSequences()
: CMathContainer
, CMathDelay
, CMathEvent
- createUpdateSimulationValuesSequence()
: CMathContainer
- createURI2Predicate()
: CRDFPredicate
- createURIMap()
: CMIRIAMResources
- createValue()
: CCopasiParameter
- createValueChangeProhibited()
: CMathContainer
- createValueString()
: CLColorDefinition
- createVariables()
: CCopasiSpringLayout
- createVector()
: BarColor
- createVolumeUnit()
: CSBMLExporter
- creation()
: COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodSRES
, COptMethodSS
- crossover()
: COptMethodGA
, COptMethodGASR
- csc()
: CEvaluationNodeFunction
- csch()
: CEvaluationNodeFunction
- cspstep()
: CCSPMethod
- ctor_common()
: CChemEqParser
, CEvaluationLexer
, CUnitParser
, yyFlexLexer
- currentIndex()
: CUndoStack