#include <CNewtonMethod.h>

Inheritance diagram for CNewtonMethod:

Public Types
enum class	eTargetCriterion { DistanceAndRate , Distance , Rate , __SIZE }

Public Types inherited from CSteadyStateMethod
enum	ReturnCode { notFound = 0 , found , foundEquilibrium , foundNegative }

Public Types inherited from CCopasiParameterGroup
typedef CDataObjectMap::const_type_iterator< CCopasiParameter >	const_name_iterator

typedef std::vector< CCopasiParameter * >	elements

typedef elements::iterator	index_iterator

typedef CDataObjectMap::type_iterator< CCopasiParameter >	name_iterator

Public Types inherited from CCopasiParameter
enum class	eUserInterfaceFlag { editable , basic , unsupported , __SIZE }

enum class	Type { DOUBLE = 0 , UDOUBLE , INT , UINT , BOOL , GROUP , STRING , CN , KEY , FILE , EXPRESSION , INVALID , __SIZE }

typedef CFlags< eUserInterfaceFlag >	UserInterfaceFlag

Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap

Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet

enum	Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE }

Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList

typedef std::set< const CObjectInterface * >	ObjectSet

Public Member Functions
	CNewtonMethod (const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::Newton, const CTaskEnum::Task &taskType=CTaskEnum::Task::steadyState)

	CNewtonMethod (const CNewtonMethod &src, const CDataContainer *pParent)

virtual bool	elevateChildren ()

virtual bool	initialize (const CSteadyStateProblem *pProblem)

bool	isSteadyState (const C_FLOAT64 &value) const

virtual bool	isValidProblem (const CCopasiProblem *pProblem)

virtual void	load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)

virtual CSteadyStateMethod::ReturnCode	processInternal ()

C_FLOAT64	targetFunction ()

	~CNewtonMethod ()

Public Member Functions inherited from CSteadyStateMethod
	CSteadyStateMethod (const CSteadyStateMethod &src, const CDataContainer *pParent)

void	doJacobian (CMatrix< C_FLOAT64 > &jacobian, CMatrix< C_FLOAT64 > &jacobianX)

bool	elevateChildren ()

std::string	getMethodLog () const

C_FLOAT64	getStabilityResolution ()

CSteadyStateMethod::ReturnCode	process (CVectorCore< C_FLOAT64 > &State, CMatrix< C_FLOAT64 > &jacobianX, CProcessReportLevel handler)

	~CSteadyStateMethod ()

Public Member Functions inherited from CCopasiMethod
	CCopasiMethod (const CCopasiMethod &src, const CDataContainer *pParent)

virtual void	clearCallBack ()

const CProcessReportLevel &	getCallBack () const

CMathContainer *	getMathContainer () const

const CTaskEnum::Method &	getSubType () const

const CTaskEnum::Task &	getType () const

CCopasiMethod &	operator= (const CCopasiMethod &rhs)

virtual void	print (std::ostream *ostream) const

virtual void	printResult (std::ostream *ostream) const

virtual bool	setCallBack (CProcessReportLevel callBack)

void	setMathContainer (CMathContainer *pContainer)

virtual	~CCopasiMethod ()

Public Member Functions inherited from CCopasiParameterGroup
bool	addGroup (const std::string &name)

void	addParameter (CCopasiParameter *pParameter)

bool	addParameter (const CCopasiParameter &parameter)

bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

CCopasiParameterGroup *	assertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
CType *	assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

index_iterator	beginIndex () const

const_name_iterator	beginName () const

	CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)

	CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")

void	clear ()

virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const

index_iterator	endIndex () const

const_name_iterator	endName () const

CCopasiParameterGroup &	getElementTemplates ()

const CCopasiParameterGroup &	getElementTemplates () const

CCopasiParameterGroup *	getGroup (const size_t &index)

const CCopasiParameterGroup *	getGroup (const size_t &index) const

CCopasiParameterGroup *	getGroup (const std::string &name)

const CCopasiParameterGroup *	getGroup (const std::string &name) const

virtual size_t	getIndex (const CDataObject *pObject) const

size_t	getIndex (const std::string &name) const

std::string	getKey (const size_t &index) const

std::string	getKey (const std::string &name) const

virtual const std::string &	getName (const size_t &index) const

virtual const CObjectInterface *	getObject (const CCommonName &cn) const

CCopasiParameter *	getParameter (const size_t &index)

const CCopasiParameter *	getParameter (const size_t &index) const

CCopasiParameter *	getParameter (std::string name)

const CCopasiParameter *	getParameter (std::string name) const

CCopasiParameter::Type	getType (const size_t &index) const

CCopasiParameter::Type	getType (const std::string &name) const

std::string	getUniqueParameterName (const CCopasiParameter *pParameter) const

template<class CType >
CType &	getValue (const size_t &index)

template<class CType >
const CType &	getValue (const size_t &index) const

template<class CType >
CType &	getValue (const std::string &name)

template<class CType >
const CType &	getValue (const std::string &name) const

bool	haveTemplate () const

virtual CUndoObjectInterface *	insert (const CData &data)

CCopasiParameterGroup &	operator= (const CCopasiParameterGroup &rhs)

virtual bool	remove (CDataObject *pObject)

bool	removeParameter (CCopasiParameter *pParameter)

bool	removeParameter (const size_t &index)

bool	removeParameter (const std::string &name)

virtual void	setUserInterfaceFlag (const UserInterfaceFlag &flag)

template<class CType >
bool	setValue (const size_t &index, const CType &value)

template<class CType >
bool	setValue (const std::string &name, const CType &value)

size_t	size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const

bool	swap (const size_t &iFrom, const size_t &iTo)

bool	swap (index_iterator &from, index_iterator &to)

virtual CData	toData () const

virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)

virtual	~CCopasiParameterGroup ()

Public Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent)

	CCopasiParameter (const std::string &name, const Type &type, const void pValue=NULL, const CDataContainer pParent=NO_PARENT, const std::string &objectType="Parameter")

virtual CCommonName	getCN () const override

template<class CType >
const CType &	getDefault () const

virtual const std::string &	getKey () const override

virtual std::string	getObjectDisplayName () const override

const CCopasiParameter::Type &	getType () const

const UserInterfaceFlag &	getUserInterfaceFlag () const

template<class CType >
std::vector< std::pair< CType, CType > > &	getValidValues ()

template<class CType >
const std::vector< std::pair< CType, CType > > &	getValidValues () const

void *	getValidValuesPointer () const

template<class CType >
CType &	getValue ()

template<class CType >
const CType &	getValue () const

virtual void *	getValuePointer () const override

CDataObject *	getValueReference () const

bool	hasValidValues () const

bool	isBasic () const

bool	isDefault () const

bool	isEditable () const

bool	isUnsupported () const

bool	isValidValue (const bool &value) const

bool	isValidValue (const C_FLOAT64 &value) const

bool	isValidValue (const C_INT32 &value) const

bool	isValidValue (const CCommonName &value) const

template<class CType >
bool	isValidValue (const CType &) const

bool	isValidValue (const std::string &value) const

bool	isValidValue (const std::vector< CCopasiParameter * > &value) const

bool	isValidValue (const unsigned C_INT32 &value) const

CCopasiParameter &	operator= (const CCopasiParameter &rhs)

template<class CType >
bool	setDefault (const CType &defaultValue)

bool	setDefault (const std::vector< CCopasiParameter * > &defaultValue)

virtual bool	setObjectParent (const CDataContainer *pParent) override

template<class CType , class Enum >
bool	setValidValues (const CEnumAnnotation< CType, Enum > &validValues)

template<class CType >
bool	setValidValues (const std::vector< std::pair< CType, CType > > &validValues)

template<class CType >
bool	setValue (const CType &value)

bool	setValue (const std::vector< CCopasiParameter * > &value)

virtual	~CCopasiParameter ()

Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)

virtual bool	appendDeletedDependentData (CUndoData &undoData) const

	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)

	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

virtual std::string	getChildObjectUnits (const CDataObject *pObject) const

void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const

virtual objectMap &	getObjects ()

virtual const objectMap &	getObjects () const

virtual const std::string	getUnits () const override

virtual const CDataObject *	getValueObject () const override

void	objectRenamed (CDataObject *pObject, const std::string &oldName)

virtual	~CDataContainer ()

Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)

void	addReference (const CDataContainer *pReference)

virtual void	calculateValue () override

	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)

virtual void	destruct () override

virtual const CDataObject *	getDataObject () const override

CDataContainer *	getObjectAncestor (const std::string &type) const

CDataModel *	getObjectDataModel () const

const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const

const std::string &	getObjectName () const

CDataContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override

virtual const CValidity &	getValidity () const override

bool	hasFlag (const Flag &flag) const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override

bool	prerequisitsContains (const DataObjectSet &objects) const

void	removeIssue (const CIssue &issue)

void	removeReference (const CDataContainer *pReference)

bool	setObjectName (const std::string &name)

void	validityChanged (const CValidity &changedValidity) override

void	validityRemoved (const CValidity &changedValidity)

virtual	~CDataObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

	CObjectInterface (const CObjectInterface &src)

virtual	~CObjectInterface ()

Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()

	CUndoObjectInterface (const CUndoObjectInterface &src)

bool	generateUuid ()

const xg::Guid &	getUuid () const

bool	setUuid (const std::string &uuid)

bool	setUuid (const xg::Guid &uuid)

virtual	~CUndoObjectInterface ()

Static Public Attributes
static const CEnumAnnotation< std::string, eTargetCriterion >	TargetCriterion

Static Public Attributes inherited from CCopasiParameter
static const CEnumAnnotation< std::string, Type >	TypeName

static const CEnumAnnotation< std::string, Type >	XMLType

Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Private Types
enum	NewtonResultCode { found = 0 , notFound , iterationLimitExceeded , dampingLimitExceeded , singularJacobian , negativeValueFound , stepSuccesful }

Private Member Functions
void	calculateDerivativesX ()

void	cleanup ()

	CNewtonMethod ()

bool	containsNaN () const

CNewtonMethod::NewtonResultCode	doIntegration (bool forward)

CNewtonMethod::NewtonResultCode	doNewtonStep (C_FLOAT64 &currentValue)

void	initializeParameter ()

CNewtonMethod::NewtonResultCode	processNewton ()

C_FLOAT64	targetFunctionDistance ()

C_FLOAT64	targetFunctionRate ()

std::string	targetValueToString () const

Private Attributes
bool	mAcceptNegative

size_t	mDimension

CVectorCore< C_FLOAT64 >	mdxdt

bool	mForceNewton

CVector< C_FLOAT64 >	mH

unsigned C_INT32	mIterationLimit

bool	mKeepProtocol

C_FLOAT64	mMaxDurationBackward

C_FLOAT64	mMaxDurationForward

CTrajectoryTask *	mpTrajectory

C_FLOAT64 *	mpX

CVector< C_FLOAT64 >	mStartState

eTargetCriterion	mTargetCriterion

C_FLOAT64	mTargetDistance

C_FLOAT64	mTargetRate

CCore::CUpdateSequence	mUpdateConcentrations

bool	mUseBackIntegration

bool	mUseIntegration

bool	mUseNewton

CVector< C_FLOAT64 >	mXold

Additional Inherited Members
Static Public Member Functions inherited from CCopasiParameter
static void	allocateValidValues (const Type &type, void *&pValidValues)

static void	allocateValue (const Type &type, void *&pValue)

static void	assignValue (const Type &type, void &pValue, const void pNewValue)

static void	deleteValidValues (const Type &type, void *&pValidValues)

static void	deleteValue (const Type &type, void *&pValue)

static CCopasiParameter *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)

static void	sanitizeObjectName (std::string &name)

Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)

static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)

Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Protected Member Functions inherited from CSteadyStateMethod
bool	allPositive ()

void	calculateJacobian (const C_FLOAT64 &oldMaxRate, const bool &reduced)

	CSteadyStateMethod (const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::steadyState)

	CSteadyStateMethod (CTaskEnum::Method subType, const CDataContainer *pParent=NO_PARENT)

void	initializeParameter ()

bool	isEquilibrium (const C_FLOAT64 &resolution) const

virtual CSteadyStateMethod::ReturnCode	returnProcess (bool steadyStateFound)

Protected Member Functions inherited from CCopasiMethod
	CCopasiMethod (const CCopasiMethod &src)

	CCopasiMethod (const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)

virtual void	signalMathContainerChanged ()

Protected Member Functions inherited from CCopasiParameterGroup
	CCopasiParameterGroup ()

Protected Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src)

Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

	CDataContainer (const CDataContainer &src)

void	initObjects ()

Protected Member Functions inherited from CDataObject
	CDataObject ()

	CDataObject (const std::string &name, const CDataContainer pParent=static_cast< CDataContainer >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Attributes inherited from CSteadyStateMethod
CVector< C_FLOAT64 >	mAtol

CVector< C_FLOAT64 * >	mCompartmentVolumes

CVectorCore< C_FLOAT64 >	mContainerState

CVectorCore< C_FLOAT64 >	mContainerStateReduced

std::ostringstream	mMethodLog

C_FLOAT64 *	mpContainerStateTime

C_FLOAT64 *	mpDerivationFactor

C_FLOAT64 *	mpDerivationResolution

CMatrix< C_FLOAT64 > *	mpJacobian

CSteadyStateTask *	mpParentTask

const CSteadyStateProblem *	mpProblem

C_FLOAT64 *	mpSSResolution

CVector< C_FLOAT64 >	mStartState

CVectorCore< C_FLOAT64 >	mSteadyState

Protected Attributes inherited from CCopasiMethod
CMathContainer *	mpContainer

CProcessReportLevel	mProcessReport

Protected Attributes inherited from CCopasiParameter
std::string	mKey

void *	mpDefault

void *	mpValidValues

void *	mpValue

CDataObject *	mpValueReference

UserInterfaceFlag	mUserInterfaceFlag

Protected Attributes inherited from CDataContainer
objectMap	mObjects

Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits

std::set< CDataContainer * >	mReferences

Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Member Enumeration Documentation

◆ eTargetCriterion

enum CNewtonMethod::eTargetCriterion

strong

Enumerator
DistanceAndRate
Distance
Rate
__SIZE

◆ NewtonResultCode

enum CNewtonMethod::NewtonResultCode

private

Enumerator
found
notFound
iterationLimitExceeded
dampingLimitExceeded
singularJacobian
negativeValueFound
stepSuccesful

Constructor & Destructor Documentation

◆ CNewtonMethod() [1/3]

CNewtonMethod::CNewtonMethod ( )

private

Default constructor.

◆ CNewtonMethod() [2/3]

CNewtonMethod::CNewtonMethod	(	const CDataContainer *	pParent,
		const CTaskEnum::Method &	methodType = `CTaskEnum::Method::Newton`,
		const CTaskEnum::Task &	taskType = `CTaskEnum::Task::steadyState`
	)

Specific constructor

Parameters

const	CDataContainer * pParent
const	CTaskEnum::Method & methodType (default: Newton)
const	CTaskEnum::Task & taskType (default: steadyState)

References initializeParameter().

◆ CNewtonMethod() [3/3]

CNewtonMethod::CNewtonMethod	(	const CNewtonMethod &	src,
		const CDataContainer *	pParent
	)

Copy constructor.

Parameters

const CNewtonMethod &	src
const	CDataContainer * pParent (default: NULL)

References initializeParameter().

◆ ~CNewtonMethod()

CNewtonMethod::~CNewtonMethod ( )

Destructor.

References cleanup().

Member Function Documentation

◆ calculateDerivativesX()

void CNewtonMethod::calculateDerivativesX ( )

private

References CCopasiMethod::mpContainer, and CMathContainer::updateSimulatedValues().

Referenced by doIntegration(), doNewtonStep(), and processNewton().

◆ cleanup()

void CNewtonMethod::cleanup ( )

private

References mpTrajectory, and pdelete.

Referenced by initialize(), and ~CNewtonMethod().

◆ containsNaN()

bool CNewtonMethod::containsNaN ( ) const

private

References CMathContainer::isStateValid(), and CCopasiMethod::mpContainer.

Referenced by doIntegration(), and isSteadyState().

◆ doIntegration()

CNewtonMethod::NewtonResultCode CNewtonMethod::doIntegration ( bool forward )

private

◆ doNewtonStep()

CNewtonMethod::NewtonResultCode CNewtonMethod::doNewtonStep ( C_FLOAT64 & currentValue )

private

Do one newton step and subsequent damping. The value of the targetfunction before the step is provided by the calling method in currentValue, the value after the step is returned in currentValue. The step starts from the state in mpX (pointing to the independent variables of mpSteadyState). After the method returns mpX contains either the old state or the state after the step (if the step was succesful). mdxdt can be expected to be up to date. Possible return values are: dampingLimitExceeded, singularJacobian, stepSuccesful

References CSteadyStateMethod::allPositive(), CVectorCore< CType >::array(), C_FLOAT64, calculateDerivativesX(), CSteadyStateMethod::calculateJacobian(), dampingLimitExceeded, mAcceptNegative, mDimension, mdxdt, mH, mKeepProtocol, CSteadyStateMethod::mMethodLog, CSteadyStateMethod::mpJacobian, mpX, mXold, negativeValueFound, CMatrix< CType >::numCols(), singularJacobian, CVectorCore< CType >::size(), CLeastSquareSolution::solve(), stepSuccesful, targetFunction(), and targetValueToString().

Referenced by processNewton().

◆ elevateChildren()

bool CNewtonMethod::elevateChildren ( )

virtual

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns: bool success

Reimplemented from CCopasiParameterGroup.

References initializeParameter(), and CSteadyStateMethod::initializeParameter().

◆ initialize()

bool CNewtonMethod::initialize ( const CSteadyStateProblem * pProblem )

virtual

Initialize the method must be called before process

Parameters

const CSteadyStateProblem * pProblem

Returns: bool success

Reimplemented from CSteadyStateMethod.

◆ initializeParameter()

void CNewtonMethod::initializeParameter ( )

private

Initialize the method parameter

References CCopasiParameterGroup::assertParameter(), CCopasiParameter::BOOL, C_FLOAT64, C_INT32, CCopasiParameterGroup::getParameter(), CCopasiParameter::getValue(), CCopasiParameterGroup::removeParameter(), CCopasiParameter::setValidValues(), CCopasiParameterGroup::setValue(), CCopasiParameter::STRING, TargetCriterion, CCopasiParameter::UDOUBLE, and CCopasiParameter::UINT.

Referenced by CNewtonMethod(), and elevateChildren().

◆ isSteadyState()

bool CNewtonMethod::isSteadyState ( const C_FLOAT64 & value ) const

References containsNaN(), and CSteadyStateMethod::mpSSResolution.

Referenced by doIntegration(), and processNewton().

◆ isValidProblem()

bool CNewtonMethod::isValidProblem ( const CCopasiProblem * pProblem )

virtual

Check if the method is suitable for this problem

Returns: bool suitability of the method

Reimplemented from CSteadyStateMethod.

References CCopasiMessage::ERROR, CMathContainer::isAutonomous(), CSteadyStateMethod::isValidProblem(), MCSteadyState, CCopasiMethod::mpContainer, and CCopasiMessage::WARNING.

◆ load()

void CNewtonMethod::load	(	CReadConfig &	configBuffer,
		CReadConfig::Mode	mode = `CReadConfig::SEARCH`
	)

virtual

Load a list of parameters

Parameters

CReadConfig &	configBuffer
CReadConfig::Mode	mode Default(CReadConfig::SEARCH)

Reimplemented from CCopasiMethod.

References C_FLOAT64, C_INT32, fatalError, CReadConfig::getVariable(), CReadConfig::getVersion(), CReadConfig::LOOP, CReadConfig::SEARCH, and CCopasiParameterGroup::setValue().

◆ processInternal()

CSteadyStateMethod::ReturnCode CNewtonMethod::processInternal ( )

virtual

This instructs the method to calculate a the steady state starting with the initialState given. The steady state is returned in the object pointed to by steadyState.

Parameters

CState	& steadyState
const	CState & initialState

Returns: CSteadyStateMethod::ReturnCode returnCode

Reimplemented from CSteadyStateMethod.

References doIntegration(), found, CSteadyStateMethod::mContainerState, mKeepProtocol, CSteadyStateMethod::mMethodLog, CCopasiMethod::mProcessReport, mStartState, mUseBackIntegration, mUseIntegration, mUseNewton, processNewton(), CSteadyStateMethod::returnProcess(), and CProcessReportLevel::setName().

◆ processNewton()

CNewtonMethod::NewtonResultCode CNewtonMethod::processNewton ( )

private

This instructs the method to calculate a the steady state starting with the initialState given. The steady state is returned in the object pointed to by steadyState.

Parameters