COPASI API  4.40.278
CTrajectoryProblem Class Reference

#include <CTrajectoryProblem.h>

Inheritance diagram for CTrajectoryProblem:
[legend]

Public Member Functions

 CTrajectoryProblem (const CDataContainer *pParent=NO_PARENT)
 
 CTrajectoryProblem (const CTrajectoryProblem &src, const CDataContainer *pParent)
 
virtual bool elevateChildren ()
 
bool getAutomaticStepSize () const
 
const C_FLOAT64getDuration () const
 
const bool & getOutputEvent () const
 
const C_FLOAT64getOutputStartTime () const
 
bool getStartInSteadyState () const
 
const unsigned C_INT32getStepNumber () const
 
const C_FLOAT64getStepSize () const
 
bool getUseValues () const
 
std::set< C_FLOAT64getValues () const
 
const std::string & getValueString () const
 
void load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::NEXT)
 
virtual void printResult (std::ostream *ostream) const
 
void setAutomaticStepSize (const bool &automaticStepSize)
 
void setDuration (const C_FLOAT64 &duration)
 
void setOutputEvent (const bool &outputEvent)
 
void setOutputStartTime (const C_FLOAT64 &endTime)
 
void setStartInSteadyState (bool flag)
 
void setStepNumber (const unsigned C_INT32 &stepNumber)
 
void setStepSize (const C_FLOAT64 &stepSize)
 
void setTimeSeriesRequested (bool flag)
 
void setUseValues (bool flag)
 
void setValues (const std::string &values)
 
void setValues (const std::vector< C_FLOAT64 > &values)
 
bool timeSeriesRequested () const
 
 ~CTrajectoryProblem ()
 
- Public Member Functions inherited from CCopasiProblem
 CCopasiProblem (const CCopasiProblem &src, const CDataContainer *pParent)
 
virtual void clearCallBack ()
 
CCopasiProblemcopy () const
 
const CProcessReportLevelgetCallBack () const
 
CMathContainergetMathContainer () const
 
virtual CCopasiTaskgetSubTask () const
 
const CTaskEnum::TaskgetType () const
 
virtual bool initialize ()
 
virtual void print (std::ostream *ostream) const
 
virtual bool restore (const bool &updateModel)
 
virtual bool setCallBack (CProcessReportLevel callBack)
 
void setMathContainer (CMathContainer *pContainer)
 
virtual bool setModel (CModel *model)
 
virtual ~CCopasiProblem ()
 
- Public Member Functions inherited from CCopasiParameterGroup
bool addGroup (const std::string &name)
 
void addParameter (CCopasiParameter *pParameter)
 
bool addParameter (const CCopasiParameter &parameter)
 
bool addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)
 
template<class CType >
bool addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)
 
virtual bool applyData (const CData &data, CUndoData::CChangeSet &changes)
 
CCopasiParameterGroupassertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)
 
template<class CType >
CType * assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)
 
index_iterator beginIndex () const
 
const_name_iterator beginName () const
 
 CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)
 
 CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")
 
void clear ()
 
virtual void createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const
 
index_iterator endIndex () const
 
const_name_iterator endName () const
 
CCopasiParameterGroupgetElementTemplates ()
 
const CCopasiParameterGroupgetElementTemplates () const
 
CCopasiParameterGroupgetGroup (const size_t &index)
 
const CCopasiParameterGroupgetGroup (const size_t &index) const
 
CCopasiParameterGroupgetGroup (const std::string &name)
 
const CCopasiParameterGroupgetGroup (const std::string &name) const
 
virtual size_t getIndex (const CDataObject *pObject) const
 
size_t getIndex (const std::string &name) const
 
std::string getKey (const size_t &index) const
 
std::string getKey (const std::string &name) const
 
virtual const std::string & getName (const size_t &index) const
 
virtual const CObjectInterfacegetObject (const CCommonName &cn) const
 
CCopasiParametergetParameter (const size_t &index)
 
const CCopasiParametergetParameter (const size_t &index) const
 
CCopasiParametergetParameter (std::string name)
 
const CCopasiParametergetParameter (std::string name) const
 
CCopasiParameter::Type getType (const size_t &index) const
 
CCopasiParameter::Type getType (const std::string &name) const
 
std::string getUniqueParameterName (const CCopasiParameter *pParameter) const
 
template<class CType >
CType & getValue (const size_t &index)
 
template<class CType >
const CType & getValue (const size_t &index) const
 
template<class CType >
CType & getValue (const std::string &name)
 
template<class CType >
const CType & getValue (const std::string &name) const
 
bool haveTemplate () const
 
virtual CUndoObjectInterfaceinsert (const CData &data)
 
CCopasiParameterGroupoperator= (const CCopasiParameterGroup &rhs)
 
virtual bool remove (CDataObject *pObject)
 
bool removeParameter (CCopasiParameter *pParameter)
 
bool removeParameter (const size_t &index)
 
bool removeParameter (const std::string &name)
 
virtual void setUserInterfaceFlag (const UserInterfaceFlag &flag)
 
template<class CType >
bool setValue (const size_t &index, const CType &value)
 
template<class CType >
bool setValue (const std::string &name, const CType &value)
 
size_t size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const
 
bool swap (const size_t &iFrom, const size_t &iTo)
 
bool swap (index_iterator &from, index_iterator &to)
 
virtual CData toData () const
 
virtual void updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)
 
virtual ~CCopasiParameterGroup ()
 
- Public Member Functions inherited from CCopasiParameter
 CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent)
 
 CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")
 
virtual CCommonName getCN () const override
 
template<class CType >
const CType & getDefault () const
 
virtual const std::string & getKey () const override
 
virtual std::string getObjectDisplayName () const override
 
const CCopasiParameter::TypegetType () const
 
const UserInterfaceFlaggetUserInterfaceFlag () const
 
template<class CType >
std::vector< std::pair< CType, CType > > & getValidValues ()
 
template<class CType >
const std::vector< std::pair< CType, CType > > & getValidValues () const
 
void * getValidValuesPointer () const
 
template<class CType >
CType & getValue ()
 
template<class CType >
const CType & getValue () const
 
virtual void * getValuePointer () const override
 
CDataObjectgetValueReference () const
 
bool hasValidValues () const
 
bool isBasic () const
 
bool isDefault () const
 
bool isEditable () const
 
bool isUnsupported () const
 
bool isValidValue (const bool &value) const
 
bool isValidValue (const C_FLOAT64 &value) const
 
bool isValidValue (const C_INT32 &value) const
 
bool isValidValue (const CCommonName &value) const
 
template<class CType >
bool isValidValue (const CType &) const
 
bool isValidValue (const std::string &value) const
 
bool isValidValue (const std::vector< CCopasiParameter * > &value) const
 
bool isValidValue (const unsigned C_INT32 &value) const
 
CCopasiParameteroperator= (const CCopasiParameter &rhs)
 
template<class CType >
bool setDefault (const CType &defaultValue)
 
bool setDefault (const std::vector< CCopasiParameter * > &defaultValue)
 
virtual bool setObjectParent (const CDataContainer *pParent) override
 
template<class CType , class Enum >
bool setValidValues (const CEnumAnnotation< CType, Enum > &validValues)
 
template<class CType >
bool setValidValues (const std::vector< std::pair< CType, CType > > &validValues)
 
template<class CType >
bool setValue (const CType &value)
 
bool setValue (const std::vector< CCopasiParameter * > &value)
 
virtual ~CCopasiParameter ()
 
- Public Member Functions inherited from CDataContainer
virtual bool add (CDataObject *pObject, const bool &adopt=true)
 
virtual bool appendDeletedDependentData (CUndoData &undoData) const
 
 CDataContainer (const CDataContainer &src, const CDataContainer *pParent)
 
 CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
 
virtual std::string getChildObjectUnits (const CDataObject *pObject) const
 
void getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const
 
virtual objectMapgetObjects ()
 
virtual const objectMapgetObjects () const
 
virtual const std::string getUnits () const override
 
virtual const CDataObjectgetValueObject () const override
 
void objectRenamed (CDataObject *pObject, const std::string &oldName)
 
virtual ~CDataContainer ()
 
- Public Member Functions inherited from CDataObject
void addIssue (const CIssue &issue)
 
void addReference (const CDataContainer *pReference)
 
virtual void calculateValue () override
 
 CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)
 
virtual void destruct () override
 
virtual const CDataObjectgetDataObject () const override
 
CDataContainergetObjectAncestor (const std::string &type) const
 
CDataModelgetObjectDataModel () const
 
const CObjectInterfacegetObjectFromCN (const CCommonName &cn) const
 
const std::string & getObjectName () const
 
CDataContainergetObjectParent () const
 
const std::string & getObjectType () const
 
virtual const CObjectInterface::ObjectSetgetPrerequisites () const override
 
virtual const CValiditygetValidity () const override
 
bool hasFlag (const Flag &flag) const
 
virtual bool isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override
 
bool prerequisitsContains (const DataObjectSet &objects) const
 
void removeIssue (const CIssue &issue)
 
void removeReference (const CDataContainer *pReference)
 
bool setObjectName (const std::string &name)
 
void validityChanged (const CValidity &changedValidity) override
 
void validityRemoved (const CValidity &changedValidity)
 
virtual ~CDataObject ()
 
- Public Member Functions inherited from CObjectInterface
 CObjectInterface ()
 
 CObjectInterface (const CObjectInterface &src)
 
virtual ~CObjectInterface ()
 
- Public Member Functions inherited from CUndoObjectInterface
 CUndoObjectInterface ()
 
 CUndoObjectInterface (const CUndoObjectInterface &src)
 
bool generateUuid ()
 
const xg::Guid & getUuid () const
 
bool setUuid (const std::string &uuid)
 
bool setUuid (const xg::Guid &uuid)
 
virtual ~CUndoObjectInterface ()
 

Protected Member Functions

 CTrajectoryProblem (const CTaskEnum::Task &type, const CDataContainer *pParent)
 
 CTrajectoryProblem (const CTrajectoryProblem &src)
 
- Protected Member Functions inherited from CCopasiProblem
 CCopasiProblem (const CCopasiProblem &src)
 
 CCopasiProblem (const CTaskEnum::Task &type, const CDataContainer *pParent)
 
virtual void signalMathContainerChanged ()
 
- Protected Member Functions inherited from CCopasiParameterGroup
 CCopasiParameterGroup ()
 
- Protected Member Functions inherited from CCopasiParameter
 CCopasiParameter (const CCopasiParameter &src)
 
- Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > * addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
 
template<class CType >
CDataObjectReference< CType > * addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
 
template<class CType >
CDataVectorReference< CType > * addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
 
 CDataContainer (const CDataContainer &src)
 
void initObjects ()
 
- Protected Member Functions inherited from CDataObject
 CDataObject ()
 
 CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
 

Protected Attributes

bool * mpAutomaticStepSize
 
C_FLOAT64mpDuration
 
bool * mpOutputEvent
 
C_FLOAT64mpOutputStartTime
 
bool * mpStartInSteadyState
 
unsigned C_INT32mpStepNumber
 
C_FLOAT64mpStepSize
 
bool * mpTimeSeriesRequested
 
bool * mpUseValues
 
std::string * mpValueString
 
bool mStepNumberSetLast
 
- Protected Attributes inherited from CCopasiProblem
CMathContainermpContainer
 
CReportmpReport
 
CProcessReportLevel mProcessReport
 
- Protected Attributes inherited from CCopasiParameter
std::string mKey
 
void * mpDefault
 
void * mpValidValues
 
void * mpValue
 
CDataObjectmpValueReference
 
UserInterfaceFlag mUserInterfaceFlag
 
- Protected Attributes inherited from CDataContainer
objectMap mObjects
 
- Protected Attributes inherited from CDataObject
ObjectSet mPrerequisits
 
std::set< CDataContainer * > mReferences
 
- Protected Attributes inherited from CObjectInterface
CValidity mValidity
 

Private Member Functions

void initializeParameter ()
 
void initObjects ()
 
bool sync ()
 

Additional Inherited Members

- Public Types inherited from CCopasiParameterGroup
typedef CDataObjectMap::const_type_iterator< CCopasiParameterconst_name_iterator
 
typedef std::vector< CCopasiParameter * > elements
 
typedef elements::iterator index_iterator
 
typedef CDataObjectMap::type_iterator< CCopasiParametername_iterator
 
- Public Types inherited from CCopasiParameter
enum class  eUserInterfaceFlag { editable , basic , unsupported , __SIZE }
 
enum class  Type {
  DOUBLE = 0 , UDOUBLE , INT , UINT ,
  BOOL , GROUP , STRING , CN ,
  KEY , FILE , EXPRESSION , INVALID ,
  __SIZE
}
 
typedef CFlags< eUserInterfaceFlagUserInterfaceFlag
 
- Public Types inherited from CDataContainer
typedef CDataObjectMap objectMap
 
- Public Types inherited from CDataObject
typedef std::set< const CDataObject * > DataObjectSet
 
enum  Flag {
  Container , Vector , Matrix , NameVector ,
  Reference , ValueBool , ValueInt , ValueInt64 ,
  ValueDbl , NonUniqueName , StaticString , ValueString ,
  Separator , DisplayName , ModelEntity , Array ,
  DataModel , Root , Gui , __SIZE
}
 
- Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * > ContainerList
 
typedef std::set< const CObjectInterface * > ObjectSet
 
- Static Public Member Functions inherited from CCopasiParameter
static void allocateValidValues (const Type &type, void *&pValidValues)
 
static void allocateValue (const Type &type, void *&pValue)
 
static void assignValue (const Type &type, void *&pValue, const void *pNewValue)
 
static void deleteValidValues (const Type &type, void *&pValidValues)
 
static void deleteValue (const Type &type, void *&pValue)
 
static CCopasiParameterfromData (const CData &data, CUndoObjectInterface *pParent)
 
- Static Public Member Functions inherited from CDataContainer
static CDataContainerfromData (const CData &data, CUndoObjectInterface *pParent)
 
- Static Public Member Functions inherited from CDataObject
static CDataObjectfromData (const CData &data, CUndoObjectInterface *pParent)
 
static void sanitizeObjectName (std::string &name)
 
- Static Public Member Functions inherited from CObjectInterface
static const CDataObjectDataObject (const CObjectInterface *pInterface)
 
static CObjectInterfaceGetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)
 
- Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType * fromData (const CData &, CUndoObjectInterface *)
 
- Static Public Attributes inherited from CCopasiParameter
static const CEnumAnnotation< std::string, TypeTypeName
 
static const CEnumAnnotation< std::string, TypeXMLType
 
- Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList EmptyList
 

Detailed Description

CTrajectoryProblem class. This class describes the trajectory problem, i.e., it allows to specify for example initial conditions and number of steps.

Created for Copasi by Stefan Hoops 2002

Constructor & Destructor Documentation

◆ CTrajectoryProblem() [1/4]

CTrajectoryProblem::CTrajectoryProblem ( const CTrajectoryProblem src)
protected

◆ CTrajectoryProblem() [2/4]

CTrajectoryProblem::CTrajectoryProblem ( const CTaskEnum::Task type,
const CDataContainer pParent 
)
protected

Specific constructor can be used to specify a different task type. only to be used by derived classes

CTrajectoryProblem class. This class describes the trajectory problem, i.e., it allows to specify for example initial conditions and number of steps.

Created for COPASI by Stefan Hoops 2002

References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().

◆ CTrajectoryProblem() [3/4]

CTrajectoryProblem::CTrajectoryProblem ( const CDataContainer pParent = NO_PARENT)

Default constructor.

Parameters
constCDataContainer * pParent (default: NULL)

Default constructor.

References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().

◆ CTrajectoryProblem() [4/4]

CTrajectoryProblem::CTrajectoryProblem ( const CTrajectoryProblem src,
const CDataContainer pParent 
)

Copy constructor.

Parameters
constCTrajectoryProblem & src @paramconst CDataContainer * pParent (default: NULL)

Copy constructor.

Parameters
const CTrajectoryProblem &src

References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().

◆ ~CTrajectoryProblem()

CTrajectoryProblem::~CTrajectoryProblem ( )

Destructor.

References DESTRUCTOR_TRACE.

Member Function Documentation

◆ elevateChildren()

bool CTrajectoryProblem::elevateChildren ( )
virtual

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns
bool success

Reimplemented from CCopasiParameterGroup.

Reimplemented in CTimeSensProblem.

References C_FLOAT64, mpDuration, mpStepNumber, mpStepSize, and setDuration().

Referenced by CTimeSensProblem::elevateChildren().

◆ getAutomaticStepSize()

◆ getDuration()

◆ getOutputEvent()

const bool & CTrajectoryProblem::getOutputEvent ( ) const

Retrieve whether to do additional output for events.

References mpOutputEvent.

Referenced by CTimeSensTask::processStep(), and CTrajectoryTask::processStep().

◆ getOutputStartTime()

◆ getStartInSteadyState()

bool CTrajectoryProblem::getStartInSteadyState ( ) const

◆ getStepNumber()

const unsigned C_INT32 & CTrajectoryProblem::getStepNumber ( ) const

Retrieve the number of time steps the trajectory method should integrate.

Returns
"const unsigned C_INT32 &" stepNumber

References mpStepNumber.

Referenced by CSEDMLExporter::createTimeCourseTask(), CTimeSensTask::initialize(), and CTrajectoryTask::initialize().

◆ getStepSize()

const C_FLOAT64 & CTrajectoryProblem::getStepSize ( ) const

Retrieve the size a integration step the trajectory method should do.

Returns
"const C_FLOAT64 &" stepSize

References mpStepSize.

Referenced by CSEDMLExporter::createTimeCourseTask(), CODEExporterBM::exportTitleData(), CODEExporterXPPAUT::exportTitleData(), CTimeSensTask::process(), and CTrajectoryTask::processTrajectory().

◆ getUseValues()

bool CTrajectoryProblem::getUseValues ( ) const

References mpUseValues.

Referenced by CTrajectoryTask::process().

◆ getValues()

std::set< C_FLOAT64 > CTrajectoryProblem::getValues ( ) const

◆ getValueString()

const std::string & CTrajectoryProblem::getValueString ( ) const

References mpValueString.

◆ initializeParameter()

◆ initObjects()

void CTrajectoryProblem::initObjects ( )
private

Referenced by CTrajectoryProblem().

◆ load()

void CTrajectoryProblem::load ( CReadConfig configBuffer,
CReadConfig::Mode  mode = CReadConfig::NEXT 
)

Load a trajectory problem

Parameters
CReadConfig &configBuffer
"CReadConfig::Modemode (Default: CReadConfig::NEXT)

Load a trajectory problem

Parameters
CReadConfig &configBuffer

References CReadConfig::getVariable(), CReadConfig::getVersion(), CReadConfig::LOOP, mpDuration, mpStepNumber, mStepNumberSetLast, and sync().

◆ printResult()

void CTrajectoryProblem::printResult ( std::ostream *  ostream) const
virtual

This is the output method for any result of a problem. The default implementation provided with CCopasiProblem. Does only print "Not implemented." To override this default behavior one needs to re-implement the virtual printResult function.

Parameters
std::ostream* ostream

Reimplemented from CCopasiProblem.

References CDataObject::getObjectParent(), CTrajectoryTask::getTimeSeries(), CTimeSeries::save(), and timeSeriesRequested().

◆ setAutomaticStepSize()

void CTrajectoryProblem::setAutomaticStepSize ( const bool &  automaticStepSize)

Set the size a integration step the trajectory method should do.

Parameters
constbool & automaticStepSize

References mpAutomaticStepSize.

◆ setDuration()

void CTrajectoryProblem::setDuration ( const C_FLOAT64 duration)

Set the end time.

Parameters
const C_FLOAT64 &duration

Set the end time.

Parameters
const C_FLOAT64 &duration @parem bool success

References mpDuration, and sync().

Referenced by CNewtonMethod::doIntegration(), elevateChildren(), and SEDMLImporter::updateCopasiTaskForSimulation().

◆ setOutputEvent()

void CTrajectoryProblem::setOutputEvent ( const bool &  outputEvent)

Set whether to output events in addition to the normal steps

Parameters
constbool & outputEvent

References mpOutputEvent.

Referenced by CAnalyticsProblem::initializeParameter(), and CCrossSectionProblem::initializeParameter().

◆ setOutputStartTime()

void CTrajectoryProblem::setOutputStartTime ( const C_FLOAT64 endTime)

Set the end time.

Parameters
const C_FLOAT64 &endTime

References mpOutputStartTime.

Referenced by SEDMLImporter::updateCopasiTaskForSimulation().

◆ setStartInSteadyState()

void CTrajectoryProblem::setStartInSteadyState ( bool  flag)

◆ setStepNumber()

void CTrajectoryProblem::setStepNumber ( const unsigned C_INT32 stepNumber)

Set the number of time steps the trajectory method should integrate.

Parameters
const unsigned C_INT32 &stepNumber

References mpStepNumber, mStepNumberSetLast, and sync().

Referenced by CNewtonMethod::doIntegration(), CNewtonMethod::initialize(), and SEDMLImporter::updateCopasiTaskForSimulation().

◆ setStepSize()

void CTrajectoryProblem::setStepSize ( const C_FLOAT64 stepSize)

Set the size a integration step the trajectory method should do.

Parameters
const C_FLOAT64 &stepSize

References mpStepSize, mStepNumberSetLast, and sync().

◆ setTimeSeriesRequested()

void CTrajectoryProblem::setTimeSeriesRequested ( bool  flag)

References mpTimeSeriesRequested.

◆ setUseValues()

void CTrajectoryProblem::setUseValues ( bool  flag)

References mpUseValues.

◆ setValues() [1/2]

void CTrajectoryProblem::setValues ( const std::string &  values)

References mpValueString.

Referenced by setValues().

◆ setValues() [2/2]

void CTrajectoryProblem::setValues ( const std::vector< C_FLOAT64 > &  values)

References C_FLOAT64, and setValues().

◆ sync()

bool CTrajectoryProblem::sync ( )
private

This function synchronizes step size and number

Returns
bool success

This function synchronizes step size and number

References C_FLOAT64, C_INT32, MCTrajectoryProblem, min, mpDuration, mpStepNumber, mpStepSize, mStepNumberSetLast, and CCopasiMessage::WARNING.

Referenced by load(), setDuration(), setStepNumber(), and setStepSize().

◆ timeSeriesRequested()

bool CTrajectoryProblem::timeSeriesRequested ( ) const

Member Data Documentation

◆ mpAutomaticStepSize

bool* CTrajectoryProblem::mpAutomaticStepSize
protected

Pointer to parameter value indicating automatic step size.

Referenced by getAutomaticStepSize(), initializeParameter(), and setAutomaticStepSize().

◆ mpDuration

◆ mpOutputEvent

bool* CTrajectoryProblem::mpOutputEvent
protected

Pointer to parameter value indicating whether events should be added to the output

Referenced by getOutputEvent(), initializeParameter(), and setOutputEvent().

◆ mpOutputStartTime

C_FLOAT64* CTrajectoryProblem::mpOutputStartTime
protected

Pointer to parameter value for output start time

Referenced by getOutputStartTime(), initializeParameter(), and setOutputStartTime().

◆ mpStartInSteadyState

bool* CTrajectoryProblem::mpStartInSteadyState
protected

Indicates whether a time course is supposed to start in a steady state realized as a CCopasiParameter

Referenced by getStartInSteadyState(), initializeParameter(), and setStartInSteadyState().

◆ mpStepNumber

unsigned C_INT32* CTrajectoryProblem::mpStepNumber
protected

Pointer to parameter value for step number

Referenced by elevateChildren(), getStepNumber(), initializeParameter(), load(), setStepNumber(), and sync().

◆ mpStepSize

C_FLOAT64* CTrajectoryProblem::mpStepSize
protected

Pointer to parameter value for step size.

Referenced by elevateChildren(), getStepSize(), initializeParameter(), setStepSize(), and sync().

◆ mpTimeSeriesRequested

bool* CTrajectoryProblem::mpTimeSeriesRequested
protected

Pointer to parameter value indicating whether a time series needs to be stored in memory

Referenced by initializeParameter(), setTimeSeriesRequested(), and timeSeriesRequested().

◆ mpUseValues

bool* CTrajectoryProblem::mpUseValues
protected

Indicates whether a time course is using a the normal trajectory or a list of values to integrate over

Referenced by getAutomaticStepSize(), getUseValues(), initializeParameter(), and setUseValues().

◆ mpValueString

std::string* CTrajectoryProblem::mpValueString
protected

the string with specific values to hit during integration

Referenced by getValues(), getValueString(), initializeParameter(), and setValues().

◆ mStepNumberSetLast

bool CTrajectoryProblem::mStepNumberSetLast
protected

Indicate whether the step number or step size was set last.

Referenced by load(), setStepNumber(), setStepSize(), and sync().


The documentation for this class was generated from the following files: