COPASI API
4.40.278
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#include <CCopasiMethod.h>
Public Member Functions | |
CCopasiMethod (const CCopasiMethod &src, const CDataContainer *pParent) | |
virtual void | clearCallBack () |
const CProcessReportLevel & | getCallBack () const |
CMathContainer * | getMathContainer () const |
const CTaskEnum::Method & | getSubType () const |
const CTaskEnum::Task & | getType () const |
virtual bool | isValidProblem (const CCopasiProblem *pProblem) |
virtual void | load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) |
CCopasiMethod & | operator= (const CCopasiMethod &rhs) |
virtual void | print (std::ostream *ostream) const |
virtual void | printResult (std::ostream *ostream) const |
virtual bool | setCallBack (CProcessReportLevel callBack) |
void | setMathContainer (CMathContainer *pContainer) |
virtual | ~CCopasiMethod () |
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bool | addGroup (const std::string &name) |
void | addParameter (CCopasiParameter *pParameter) |
bool | addParameter (const CCopasiParameter ¶meter) |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
template<class CType > | |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
virtual bool | applyData (const CData &data, CUndoData::CChangeSet &changes) |
CCopasiParameterGroup * | assertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
template<class CType > | |
CType * | assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
index_iterator | beginIndex () const |
const_name_iterator | beginName () const |
CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL) | |
CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup") | |
void | clear () |
virtual void | createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const |
virtual bool | elevateChildren () |
index_iterator | endIndex () const |
const_name_iterator | endName () const |
CCopasiParameterGroup & | getElementTemplates () |
const CCopasiParameterGroup & | getElementTemplates () const |
CCopasiParameterGroup * | getGroup (const size_t &index) |
const CCopasiParameterGroup * | getGroup (const size_t &index) const |
CCopasiParameterGroup * | getGroup (const std::string &name) |
const CCopasiParameterGroup * | getGroup (const std::string &name) const |
virtual size_t | getIndex (const CDataObject *pObject) const |
size_t | getIndex (const std::string &name) const |
std::string | getKey (const size_t &index) const |
std::string | getKey (const std::string &name) const |
virtual const std::string & | getName (const size_t &index) const |
virtual const CObjectInterface * | getObject (const CCommonName &cn) const |
CCopasiParameter * | getParameter (const size_t &index) |
const CCopasiParameter * | getParameter (const size_t &index) const |
CCopasiParameter * | getParameter (std::string name) |
const CCopasiParameter * | getParameter (std::string name) const |
CCopasiParameter::Type | getType (const size_t &index) const |
CCopasiParameter::Type | getType (const std::string &name) const |
std::string | getUniqueParameterName (const CCopasiParameter *pParameter) const |
template<class CType > | |
CType & | getValue (const size_t &index) |
template<class CType > | |
const CType & | getValue (const size_t &index) const |
template<class CType > | |
CType & | getValue (const std::string &name) |
template<class CType > | |
const CType & | getValue (const std::string &name) const |
bool | haveTemplate () const |
virtual CUndoObjectInterface * | insert (const CData &data) |
CCopasiParameterGroup & | operator= (const CCopasiParameterGroup &rhs) |
virtual bool | remove (CDataObject *pObject) |
bool | removeParameter (CCopasiParameter *pParameter) |
bool | removeParameter (const size_t &index) |
bool | removeParameter (const std::string &name) |
virtual void | setUserInterfaceFlag (const UserInterfaceFlag &flag) |
template<class CType > | |
bool | setValue (const size_t &index, const CType &value) |
template<class CType > | |
bool | setValue (const std::string &name, const CType &value) |
size_t | size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const |
bool | swap (const size_t &iFrom, const size_t &iTo) |
bool | swap (index_iterator &from, index_iterator &to) |
virtual CData | toData () const |
virtual void | updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject) |
virtual | ~CCopasiParameterGroup () |
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CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent) | |
CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter") | |
virtual CCommonName | getCN () const override |
template<class CType > | |
const CType & | getDefault () const |
virtual const std::string & | getKey () const override |
virtual std::string | getObjectDisplayName () const override |
const CCopasiParameter::Type & | getType () const |
const UserInterfaceFlag & | getUserInterfaceFlag () const |
template<class CType > | |
std::vector< std::pair< CType, CType > > & | getValidValues () |
template<class CType > | |
const std::vector< std::pair< CType, CType > > & | getValidValues () const |
void * | getValidValuesPointer () const |
template<class CType > | |
CType & | getValue () |
template<class CType > | |
const CType & | getValue () const |
virtual void * | getValuePointer () const override |
CDataObject * | getValueReference () const |
bool | hasValidValues () const |
bool | isBasic () const |
bool | isDefault () const |
bool | isEditable () const |
bool | isUnsupported () const |
bool | isValidValue (const bool &value) const |
bool | isValidValue (const C_FLOAT64 &value) const |
bool | isValidValue (const C_INT32 &value) const |
bool | isValidValue (const CCommonName &value) const |
template<class CType > | |
bool | isValidValue (const CType &) const |
bool | isValidValue (const std::string &value) const |
bool | isValidValue (const std::vector< CCopasiParameter * > &value) const |
bool | isValidValue (const unsigned C_INT32 &value) const |
CCopasiParameter & | operator= (const CCopasiParameter &rhs) |
template<class CType > | |
bool | setDefault (const CType &defaultValue) |
bool | setDefault (const std::vector< CCopasiParameter * > &defaultValue) |
virtual bool | setObjectParent (const CDataContainer *pParent) override |
template<class CType , class Enum > | |
bool | setValidValues (const CEnumAnnotation< CType, Enum > &validValues) |
template<class CType > | |
bool | setValidValues (const std::vector< std::pair< CType, CType > > &validValues) |
template<class CType > | |
bool | setValue (const CType &value) |
bool | setValue (const std::vector< CCopasiParameter * > &value) |
virtual | ~CCopasiParameter () |
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virtual bool | add (CDataObject *pObject, const bool &adopt=true) |
virtual bool | appendDeletedDependentData (CUndoData &undoData) const |
CDataContainer (const CDataContainer &src, const CDataContainer *pParent) | |
CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
virtual std::string | getChildObjectUnits (const CDataObject *pObject) const |
void | getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const |
virtual objectMap & | getObjects () |
virtual const objectMap & | getObjects () const |
virtual const std::string | getUnits () const override |
virtual const CDataObject * | getValueObject () const override |
void | objectRenamed (CDataObject *pObject, const std::string &oldName) |
virtual | ~CDataContainer () |
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void | addIssue (const CIssue &issue) |
void | addReference (const CDataContainer *pReference) |
virtual void | calculateValue () override |
CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL) | |
virtual void | destruct () override |
virtual const CDataObject * | getDataObject () const override |
CDataContainer * | getObjectAncestor (const std::string &type) const |
CDataModel * | getObjectDataModel () const |
const CObjectInterface * | getObjectFromCN (const CCommonName &cn) const |
const std::string & | getObjectName () const |
CDataContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const override |
virtual const CValidity & | getValidity () const override |
bool | hasFlag (const Flag &flag) const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override |
bool | prerequisitsContains (const DataObjectSet &objects) const |
void | removeIssue (const CIssue &issue) |
void | removeReference (const CDataContainer *pReference) |
bool | setObjectName (const std::string &name) |
void | validityChanged (const CValidity &changedValidity) override |
void | validityRemoved (const CValidity &changedValidity) |
virtual | ~CDataObject () |
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CObjectInterface () | |
CObjectInterface (const CObjectInterface &src) | |
virtual | ~CObjectInterface () |
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CUndoObjectInterface () | |
CUndoObjectInterface (const CUndoObjectInterface &src) | |
bool | generateUuid () |
const xg::Guid & | getUuid () const |
bool | setUuid (const std::string &uuid) |
bool | setUuid (const xg::Guid &uuid) |
virtual | ~CUndoObjectInterface () |
Protected Member Functions | |
CCopasiMethod (const CCopasiMethod &src) | |
CCopasiMethod (const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType) | |
virtual void | signalMathContainerChanged () |
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CCopasiParameterGroup () | |
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CCopasiParameter (const CCopasiParameter &src) | |
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template<class CType > | |
CDataMatrixReference< CType > * | addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataObjectReference< CType > * | addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataVectorReference< CType > * | addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
CDataContainer (const CDataContainer &src) | |
void | initObjects () |
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CDataObject () | |
CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
Protected Attributes | |
CMathContainer * | mpContainer |
CProcessReportLevel | mProcessReport |
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std::string | mKey |
void * | mpDefault |
void * | mpValidValues |
void * | mpValue |
CDataObject * | mpValueReference |
UserInterfaceFlag | mUserInterfaceFlag |
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objectMap | mObjects |
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ObjectSet | mPrerequisits |
std::set< CDataContainer * > | mReferences |
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CValidity | mValidity |
Private Member Functions | |
CCopasiMethod () | |
Private Attributes | |
CTaskEnum::Method | mSubType |
CTaskEnum::Task | mTaskType |
Friends | |
std::ostream & | operator<< (std::ostream &os, const CCopasiMethod &o) |
Additional Inherited Members | |
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typedef CDataObjectMap::const_type_iterator< CCopasiParameter > | const_name_iterator |
typedef std::vector< CCopasiParameter * > | elements |
typedef elements::iterator | index_iterator |
typedef CDataObjectMap::type_iterator< CCopasiParameter > | name_iterator |
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enum class | eUserInterfaceFlag { editable , basic , unsupported , __SIZE } |
enum class | Type { DOUBLE = 0 , UDOUBLE , INT , UINT , BOOL , GROUP , STRING , CN , KEY , FILE , EXPRESSION , INVALID , __SIZE } |
typedef CFlags< eUserInterfaceFlag > | UserInterfaceFlag |
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typedef CDataObjectMap | objectMap |
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typedef std::set< const CDataObject * > | DataObjectSet |
enum | Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE } |
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typedef std::vector< const CDataContainer * > | ContainerList |
typedef std::set< const CObjectInterface * > | ObjectSet |
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static void | allocateValidValues (const Type &type, void *&pValidValues) |
static void | allocateValue (const Type &type, void *&pValue) |
static void | assignValue (const Type &type, void *&pValue, const void *pNewValue) |
static void | deleteValidValues (const Type &type, void *&pValidValues) |
static void | deleteValue (const Type &type, void *&pValue) |
static CCopasiParameter * | fromData (const CData &data, CUndoObjectInterface *pParent) |
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static CDataContainer * | fromData (const CData &data, CUndoObjectInterface *pParent) |
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static CDataObject * | fromData (const CData &data, CUndoObjectInterface *pParent) |
static void | sanitizeObjectName (std::string &name) |
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static const CDataObject * | DataObject (const CObjectInterface *pInterface) |
static CObjectInterface * | GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName) |
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template<class CType > | |
static CType * | fromData (const CData &, CUndoObjectInterface *) |
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static const CEnumAnnotation< std::string, Type > | TypeName |
static const CEnumAnnotation< std::string, Type > | XMLType |
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static const CObjectInterface::ContainerList | EmptyList |
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Default constructor
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Specific constructor
const | CDataContainer * pParent |
const | CTaskEnum::Method & methodType |
const | CTaskEnum::Task & taskType |
CCopasiMethod class. This class is used to describe a task in COPASI. This class is intended to be used as the parent class for all methods within COPASI.
Created for COPASI by Stefan Hoops 2003
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CCopasiMethod::CCopasiMethod | ( | const CCopasiMethod & | src, |
const CDataContainer * | pParent | ||
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Copy constructor
const | CCopasiMethodr & src |
const | CDataContainer * pParent (default: NULL) |
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Destructor
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resets the currently set callback by calling setCallBack(NULL)
References setCallBack().
const CProcessReportLevel & CCopasiMethod::getCallBack | ( | ) | const |
References mProcessReport.
CMathContainer * CCopasiMethod::getMathContainer | ( | ) | const |
const CTaskEnum::Method & CCopasiMethod::getSubType | ( | ) | const |
Retrieve the sub type of the method
References mSubType.
Referenced by CCopasiTask::applyData(), CMethodFactory::copy(), CCopasiTask::createUndoData(), CSEDMLExporter::exportAlgorithm(), CEFMTask::getFluxModeDescription(), CEFMTask::getReactionEquation(), COptPopulationMethod::initialize(), COptProblem::initialize(), CNewtonMethod::initialize(), COptPopulationMethod::initObjects(), CHybridMethod::isValidProblem(), CStochMethod::isValidProblem(), CTauLeapMethod::isValidProblem(), CTrajAdaptiveSA::isValidProblem(), CTrajectoryMethodDsaLsodar::isValidProblem(), CTSSAMethod::isValidProblem(), MethodHandler::processStart(), CCopasiXML::saveTaskList(), CTSSAMethod::schur(), CCopasiTask::setMethodType(), and CCopasiTask::toData().
const CTaskEnum::Task & CCopasiMethod::getType | ( | void | ) | const |
Retrieve the type of the method
References mTaskType.
Referenced by COptMethodSS::initialize().
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Check if the method is suitable for this problem
Reimplemented in CSensMethod, CTSSAMethod, CTrajectoryMethodDsaLsodar, CTrajectoryMethod, CTrajAdaptiveSA, CTauLeapMethod, CStochMethod, CStochDirectMethod, CHybridMethodODE45, CHybridMethod, CTimeSensMethod, CSteadyStateMethod, CNewtonMethod, CMCAMethod, CScanMethod, COscillationMethod, COptMethod, CLyapWolfMethod, CLyapMethod, CLNAMethod, CEFMMethod, CCrossSectionMethod, and CAnalyticsMethod.
References CCopasiMessage::ERROR, CCopasiMessage::EXCEPTION, CMathContainer::getEvents(), CTaskEnum::lna, CTaskEnum::lyap, MCCopasiMethod, mpContainer, mTaskType, CVectorCore< CType >::size(), and CTaskEnum::tssAnalysis.
Referenced by CEFMTask::initialize(), CLyapTask::initialize(), CScanTask::initialize(), CTimeSensTask::initialize(), CTrajectoryTask::initialize(), CTSSATask::initialize(), CLNATask::initialize(), CMoietiesTask::initialize(), CMCATask::initialize(), CAnalyticsMethod::isValidProblem(), CCrossSectionMethod::isValidProblem(), CEFMMethod::isValidProblem(), CLNAMethod::isValidProblem(), CLyapMethod::isValidProblem(), COptMethod::isValidProblem(), COscillationMethod::isValidProblem(), CScanMethod::isValidProblem(), CMCAMethod::isValidProblem(), CSteadyStateMethod::isValidProblem(), CTimeSensMethod::isValidProblem(), CTrajectoryMethod::isValidProblem(), CTSSAMethod::isValidProblem(), CSensMethod::isValidProblem(), COscillationTask::process(), CSensTask::process(), COptTask::process(), CFitTask::process(), CTSSATask::updateMatrices(), CLNATask::updateMatrices(), and CMCATask::updateMatrices().
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Load a list of parameters
CReadConfig & | configBuffer |
CReadConfig::Mode | mode Default(CReadConfig::SEARCH) |
Reimplemented in CNewtonMethod.
References fatalError.
CCopasiMethod & CCopasiMethod::operator= | ( | const CCopasiMethod & | rhs | ) |
References mpContainer, mProcessReport, mSubType, mTaskType, and CCopasiParameterGroup::operator=().
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This is the output method for any object. The default implementation provided with CDataObject uses the ostream operator<< of the object to print the object.To overide this default behaviour one needs to reimplement the virtual print function.
std::ostream | * ostream |
Reimplemented from CCopasiParameterGroup.
Reimplemented in COptPopulationMethod.
Referenced by COptPopulationMethod::print().
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This is the output method for any result of a method. The default implementation provided with CCopasiMethod. Does only print "Not implmented." To overide this default behaviour one needs to reimplement the virtual printResult function.
std::ostream | * ostream |
Reimplemented in CILDMModifiedMethod, CILDMMethod, and CCSPMethod.
Referenced by CTSSAProblem::printResult().
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Set the call back of the problem
CProcessReport | * pCallBack |
Reimplemented in CSensMethod.
References mProcessReport.
Referenced by clearCallBack(), CEFMTask::setCallBack(), CCopasiTask::setCallBack(), CMoietiesTask::setCallBack(), COscillationTask::setCallBack(), CFitTask::setCallBack(), and CSensMethod::setCallBack().
void CCopasiMethod::setMathContainer | ( | CMathContainer * | pContainer | ) |
Set the model of the problem
CMathContainer | * pContainer |
References mpContainer, and signalMathContainerChanged().
Referenced by CMethodFactory::copy(), CMethodFactory::create(), CTSSATask::initialize(), CCopasiTask::setMathContainer(), CHybridNextReactionLSODAMethod::start(), CTSSAMethod::start(), and CTSSATask::updateMatrices().
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Signal that the math container has changed
Reimplemented in CTrajectoryMethod, CTimeSensMethod, and COptMethod.
Referenced by setMathContainer().
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The model of the problem
Referenced by CSteadyStateMethod::allPositive(), CLyapWolfMethod::calculate(), CScanMethod::calculate(), CTimeSensMethod::calculate_dAssignments_dPar(), CTimeSensMethod::calculate_dAssignments_dState(), CTimeSensMethod::calculate_dInitialState_dPar(), CTimeSensMethod::calculate_dRate_dPar(), CLNAMethod::calculateCovarianceMatrixFull(), CLNAMethod::calculateCovarianceMatrixReduced(), CHybridMethod::calculateDerivative(), CTSSAMethod::calculateDerivatives(), CNewtonMethod::calculateDerivativesX(), CSteadyStateMethod::calculateJacobian(), CMCAMethod::calculateUnscaledElasticities(), CHybridMethodODE45::checkRoots(), CStochDirectMethod::checkRoots(), CNewtonMethod::containsNaN(), CMCAMethod::createLinkMatrix(), CTimeSensLsodaMethod::createRootMask(), CHybridMethodODE45::createRootMask(), CLsodaMethod::createRootMask(), CLsodaMethod2::createRootMask(), CRadau5Method::createRootMask(), CStochasticRungeKuttaRI5::createRootMask(), CCSPMethod::CSPImportanceIndex(), CCSPMethod::CSPOutput(), CCSPMethod::CSPParticipationIndex(), CCSPMethod::CSPradicalPointer(), CCSPMethod::cspstep(), CLsodaMethod2::destroyRootMask(), CStochasticRungeKuttaRI5::destroyRootMask(), CILDMMethod::deuflhard(), CSensMethod::do_target_calculation(), CNewtonMethod::doIntegration(), CSteadyStateMethod::doJacobian(), CTrajAdaptiveSA::doSingleSSAStep(), CStochDirectMethod::doSingleStep(), CStochNextReactionMethod::doSingleStep(), CTrajAdaptiveSA::doSingleTauLeapStep(), CLyapWolfMethod::evalF(), CTimeSensLsodaMethod::evalF(), CHybridMethodODE45::evalF(), CLsodaMethod::evalF(), CLsodaMethod2::evalF(), CRadau5Method::evalF(), CTrajectoryMethodDsaLsodar::evalF(), CStochasticRungeKuttaRI5::evalNoise(), CTimeSensLsodaMethod::evalR(), CLsodaMethod::evalR(), CRadau5Method::evalR(), CHybridMethodODE45::evalR(), CStochasticRungeKuttaRI5::evalRate(), CLsodaMethod2::evalRoot(), CStochasticRungeKuttaRI5::evalRoot(), CHybridMethodODE45::fireReaction(), CTrajectoryMethodDsaLsodar::fireReaction(), getMathContainer(), CMCAMethod::getModel(), CTimeSensLsodaMethod::hasStateChanged(), CLsodaMethod::hasStateChanged(), CRadau5Method::hasStateChanged(), CScanMethod::init(), CBitPatternMethod::initialize(), CBitPatternTreeMethod::initialize(), CEFMAlgorithm::initialize(), CNewtonMethod::initialize(), CSteadyStateMethod::initialize(), CSensMethod::initialize(), CTimeSensMethod::initializeDerivativesCalculations(), CCSPMethod::initializeOutput(), CTimeSensMethod::initResult(), CHybridMethodODE45::integrateDeterministicPart(), CHybridNextReactionRKMethod::integrateDeterministicPart(), CTrajectoryMethodDsaLsodar::integrateDeterministicPart(), CStochasticRungeKuttaRI5::internalStep(), CTrajectoryMethodDsaLsodar::CPartition::intialize(), CSteadyStateMethod::isEquilibrium(), CEFMMethod::isValidProblem(), CLNAMethod::isValidProblem(), CLyapMethod::isValidProblem(), CMCAMethod::isValidProblem(), CNewtonMethod::isValidProblem(), CHybridMethod::isValidProblem(), CStochDirectMethod::isValidProblem(), CStochMethod::isValidProblem(), CTauLeapMethod::isValidProblem(), CTrajAdaptiveSA::isValidProblem(), CTrajectoryMethodDsaLsodar::isValidProblem(), CTSSAMethod::isValidProblem(), isValidProblem(), CILDMMethod::newton(), operator=(), CTimeSensMethod::output(), CTrajectoryMethod::output(), CHybridMethodODE45::partitionSystem(), CTimeSensLsodaMethod::peekAhead(), CLsodaMethod::peekAhead(), CLsodaMethod2::peekAhead(), CRadau5Method::peekAhead(), CCSPMethod::printResult(), CILDMModifiedMethod::printResult(), CMoietiesMethod::process(), CLNAMethod::resizeAllMatrices(), CMCAMethod::resizeAllMatrices(), CSteadyStateMethod::returnProcess(), CStochDirectMethod::rootValue(), CMCAMethod::scaleMCA(), CCSPMethod::setAnnotationM(), CILDMMethod::setAnnotationM(), CILDMModifiedMethod::setAnnotationM(), setMathContainer(), CTimeSensLsodaMethod::setRootMaskType(), CLsodaMethod::setRootMaskType(), CRadau5Method::setRootMaskType(), CHybridMethod::setupDependencyGraph(), CCSPMethod::setVectors(), CILDMMethod::setVectors(), CCSPMethod::setVectorsToNaN(), COptMethod::signalMathContainerChanged(), CTimeSensMethod::signalMathContainerChanged(), CTrajectoryMethod::signalMathContainerChanged(), CLyapWolfMethod::start(), CTimeSensLsodaMethod::start(), CHybridMethod::start(), CHybridMethodODE45::start(), CHybridNextReactionLSODAMethod::start(), CLsodaMethod::start(), CLsodaMethod2::start(), CRadau5Method::start(), CStochasticRungeKuttaRI5::start(), CStochDirectMethod::start(), CStochMethod::start(), CTauLeapMethod::start(), CTrajAdaptiveSA::start(), CTrajectoryMethod::start(), CTrajectoryMethodDsaLsodar::start(), CCSPMethod::start(), CTSSAMethod::start(), CTimeSensLsodaMethod::stateChange(), CLsodaMethod::stateChange(), CLsodaMethod2::stateChange(), CRadau5Method::stateChange(), CStochDirectMethod::stateChange(), CLsodaMethod2::step(), CCSPMethod::step(), CILDMMethod::step(), CILDMModifiedMethod::step(), CTimeSensLsodaMethod::step(), CHybridMethod::step(), CLsodaMethod::step(), CRadau5Method::step(), CTauLeapMethod::step(), CNewtonMethod::targetFunction(), CNewtonMethod::targetFunctionDistance(), CNewtonMethod::targetFunctionRate(), and CHybridMethod::updatePriorityQueue().
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a pointer to the callback
Referenced by CBitPatternMethod::calculate(), CBitPatternTreeMethod::calculate(), CEFMAlgorithm::calculate(), CSSAMethod::calculate(), CLyapWolfMethod::calculate(), CEFMAlgorithm::calculateFluxModes(), CEFMAlgorithm::calculateNextTableau(), CBitPatternTreeMethod::combine(), CBitPatternMethod::combine(), CSensMethod::do_target_calculation(), CNewtonMethod::doIntegration(), getCallBack(), CBitPatternMethod::initialize(), CBitPatternTreeMethod::initialize(), CEFMAlgorithm::initialize(), CSSAMethod::initialize(), COptMethodCoranaWalk::initialize(), COptMethodDE::initialize(), COptMethodGA::initialize(), COptMethodHookeJeeves::initialize(), COptMethodLevenbergMarquardt::initialize(), COptMethodNelderMead::initialize(), COptMethodPS::initialize(), COptMethodSA::initialize(), COptMethodSS::initialize(), COptPopulationMethod::initialize(), operator=(), COptMethodCoranaWalk::optimise(), COptMethodDE::optimise(), COptMethodEP::optimise(), COptMethodGA::optimise(), COptMethodGASR::optimise(), COptMethodHookeJeeves::optimise(), COptMethodLevenbergMarquardt::optimise(), COptMethodNelderMead::optimise(), COptMethodPS::optimise(), COptMethodSA::optimise(), COptMethodSRES::optimise(), COptMethodSS::optimise(), CMoietiesMethod::process(), CSensMethod::process(), CSteadyStateMethod::process(), CNewtonMethod::processInternal(), CNewtonMethod::processNewton(), setCallBack(), and CSensMethod::setCallBack().
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The type of the method
Referenced by getSubType(), and operator=().
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The type of the method
Referenced by getType(), isValidProblem(), and operator=().