CNewtonMethod Member List

This is the complete list of members for CNewtonMethod, including all inherited members.

__SIZE enum value	CDataObject
add(CDataObject *pObject, const bool &adopt=true)	CDataContainer	virtual
addGroup(const std::string &name)	CCopasiParameterGroup
addIssue(const CIssue &issue)	CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
addParameter(const CCopasiParameter &parameter)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
addParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
addReference(const CDataContainer *pReference)	CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer	protected
allocateValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
allocateValue(const Type &type, void *&pValue)	CCopasiParameter	static
allPositive()	CSteadyStateMethod	protected
appendDeletedDependentData(CUndoData &undoData) const	CDataContainer	virtual
applyData(const CData &data, CUndoData::CChangeSet &changes)	CCopasiParameterGroup	virtual
Array enum value	CDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)	CCopasiParameterGroup	inline
assignDefault(const void *pDefault)	CCopasiParameter	private
assignValidValues(const void *pValidValues)	CCopasiParameter	private
assignValue(const Type &type, void *&pValue, const void *pNewValue)	CCopasiParameter	static
assignValue(const void *pValue)	CCopasiParameter	private
beginIndex() const	CCopasiParameterGroup
beginName() const	CCopasiParameterGroup
calculateDerivativesX()	CNewtonMethod	private
calculateJacobian(const C_FLOAT64 &oldMaxRate, const bool &reduced)	CSteadyStateMethod	protected
calculateValue() override	CDataObject	virtual
CCopasiMethod()	CCopasiMethod	private
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src)	CCopasiMethod	protected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)	CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)	CCopasiParameter	protected
CCopasiParameter()	CCopasiParameter	private
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)	CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")	CCopasiParameter
CCopasiParameterGroup()	CCopasiParameterGroup	protected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)	CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")	CCopasiParameterGroup
CDataContainer()	CDataContainer	private
CDataContainer(const CDataContainer &src)	CDataContainer	protected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)	CDataContainer
CDataObject()	CDataObject	protected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)	CDataObject	protected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)	CDataObject
cleanup()	CNewtonMethod	private
clear()	CCopasiParameterGroup
clearCallBack()	CCopasiMethod	virtual
CNewtonMethod()	CNewtonMethod	private
CNewtonMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::Newton, const CTaskEnum::Task &taskType=CTaskEnum::Task::steadyState)	CNewtonMethod
CNewtonMethod(const CNewtonMethod &src, const CDataContainer *pParent)	CNewtonMethod
CObjectInterface()	CObjectInterface
CObjectInterface(const CObjectInterface &src)	CObjectInterface
const_name_iterator typedef	CCopasiParameterGroup
Container enum value	CDataObject
ContainerList typedef	CObjectInterface
containsNaN() const	CNewtonMethod	private
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const	CCopasiParameterGroup	virtual
createValue()	CCopasiParameter	private
CSteadyStateMethod()	CSteadyStateMethod	private
CSteadyStateMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::steadyState)	CSteadyStateMethod	protected
CSteadyStateMethod(CTaskEnum::Method subType, const CDataContainer *pParent=NO_PARENT)	CSteadyStateMethod	protected
CSteadyStateMethod(const CSteadyStateMethod &src, const CDataContainer *pParent)	CSteadyStateMethod
CUndoObjectInterface()	CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)	CUndoObjectInterface
dampingLimitExceeded enum value	CNewtonMethod	private
DataModel enum value	CDataObject
DataObject(const CObjectInterface *pInterface)	CObjectInterface	static
DataObjectSet typedef	CDataObject
deleteValidValues(const Type &type, void *&pValidValues)	CCopasiParameter	static
deleteValue(const Type &type, void *&pValue)	CCopasiParameter	static
destruct() override	CDataObject	virtual
DisplayName enum value	CDataObject
doIntegration(bool forward)	CNewtonMethod	private
doJacobian(CMatrix< C_FLOAT64 > &jacobian, CMatrix< C_FLOAT64 > &jacobianX)	CSteadyStateMethod
doNewtonStep(C_FLOAT64 &currentValue)	CNewtonMethod	private
elements typedef	CCopasiParameterGroup
elevateChildren()	CNewtonMethod	virtual
EmptyList	CDataContainer	static
endIndex() const	CCopasiParameterGroup
endName() const	CCopasiParameterGroup
eTargetCriterion enum name	CNewtonMethod
eUserInterfaceFlag enum name	CCopasiParameter
Flag enum name	CDataObject
found enum value	CNewtonMethod	private
foundEquilibrium enum value	CSteadyStateMethod
foundNegative enum value	CSteadyStateMethod
fromData(const CData &data, CUndoObjectInterface *pParent)	CCopasiParameter	static
generateUuid()	CUndoObjectInterface
getCallBack() const	CCopasiMethod
getChildObjectUnits(const CDataObject *pObject) const	CDataContainer	virtual
getCN() const override	CCopasiParameter	virtual
getDataObject() const override	CDataObject	virtual
getDefault() const	CCopasiParameter	inline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) const	CDataContainer
getElementTemplates()	CCopasiParameterGroup
getElementTemplates() const	CCopasiParameterGroup
getGroup(const std::string &name)	CCopasiParameterGroup
getGroup(const std::string &name) const	CCopasiParameterGroup
getGroup(const size_t &index)	CCopasiParameterGroup
getGroup(const size_t &index) const	CCopasiParameterGroup
getIndex(const CDataObject *pObject) const	CCopasiParameterGroup	virtual
getIndex(const std::string &name) const	CCopasiParameterGroup
getKey(const std::string &name) const	CCopasiParameterGroup
getKey(const size_t &index) const	CCopasiParameterGroup
CCopasiParameter::getKey() const override	CCopasiParameter	virtual
getMathContainer() const	CCopasiMethod
getMethodLog() const	CSteadyStateMethod
getName(const size_t &index) const	CCopasiParameterGroup	virtual
getObject(const CCommonName &cn) const	CCopasiParameterGroup	virtual
getObjectAncestor(const std::string &type) const	CDataObject
getObjectDataModel() const	CDataObject
getObjectDisplayName() const override	CCopasiParameter	virtual
getObjectFromCN(const CCommonName &cn) const	CDataObject
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)	CObjectInterface	static
getObjectName() const	CDataObject
getObjectParent() const	CDataObject
getObjects() const	CDataContainer	virtual
getObjects()	CDataContainer	virtual
getObjectType() const	CDataObject
getParameter(std::string name)	CCopasiParameterGroup
getParameter(std::string name) const	CCopasiParameterGroup
getParameter(const size_t &index)	CCopasiParameterGroup
getParameter(const size_t &index) const	CCopasiParameterGroup
getPrerequisites() const override	CDataObject	virtual
getStabilityResolution()	CSteadyStateMethod
getSubType() const	CCopasiMethod
getType() const	CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const	CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const	CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const	CCopasiParameterGroup
getUnits() const override	CDataContainer	virtual
getUserInterfaceFlag() const	CCopasiParameter
getUuid() const	CUndoObjectInterface
getValidity() const override	CDataObject	virtual
getValidValues() const	CCopasiParameter	inline
getValidValues()	CCopasiParameter	inline
getValidValuesPointer() const	CCopasiParameter
getValue(const std::string &name) const	CCopasiParameterGroup	inline
getValue(const std::string &name)	CCopasiParameterGroup	inline
getValue(const size_t &index) const	CCopasiParameterGroup	inline
getValue(const size_t &index)	CCopasiParameterGroup	inline
CCopasiParameter::getValue() const	CCopasiParameter	inline
CCopasiParameter::getValue()	CCopasiParameter	inline
getValueObject() const override	CDataContainer	virtual
getValuePointer() const override	CCopasiParameter	virtual
getValueReference() const	CCopasiParameter
Gui enum value	CDataObject
hasFlag(const Flag &flag) const	CDataObject
hasValidValues() const	CCopasiParameter
haveTemplate() const	CCopasiParameterGroup
index_iterator typedef	CCopasiParameterGroup
initialize(const CSteadyStateProblem *pProblem)	CNewtonMethod	virtual
initializeParameter()	CNewtonMethod	private
initObjects()	CDataContainer	protected
insert(const CData &data)	CCopasiParameterGroup	virtual
inValidValues(const CType &value) const	CCopasiParameter	inlineprivate
isBasic() const	CCopasiParameter
isDefault() const	CCopasiParameter
isEditable() const	CCopasiParameter
isEquilibrium(const C_FLOAT64 &resolution) const	CSteadyStateMethod	protected
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override	CDataObject	virtual
isSteadyState(const C_FLOAT64 &value) const	CNewtonMethod
isUnsupported() const	CCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)	CNewtonMethod	virtual
isValidValue(const C_FLOAT64 &value) const	CCopasiParameter
isValidValue(const C_INT32 &value) const	CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const	CCopasiParameter
isValidValue(const bool &value) const	CCopasiParameter
isValidValue(const std::string &value) const	CCopasiParameter
isValidValue(const CCommonName &value) const	CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const	CCopasiParameter
isValidValue(const CType &) const	CCopasiParameter	inline
iterationLimitExceeded enum value	CNewtonMethod	private
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)	CNewtonMethod	virtual
mAcceptNegative	CNewtonMethod	private
mAggregateValidity	CDataObject	private
mAtol	CSteadyStateMethod	protected
Matrix enum value	CDataObject
mCompartmentVolumes	CSteadyStateMethod	protected
mContainerState	CSteadyStateMethod	protected
mContainerStateReduced	CSteadyStateMethod	protected
mDimension	CNewtonMethod	private
mdxdt	CNewtonMethod	private
mForceNewton	CNewtonMethod	private
mH	CNewtonMethod	private
mIterationLimit	CNewtonMethod	private
mKeepProtocol	CNewtonMethod	private
mKey	CCopasiParameter	protected
mMaxDurationBackward	CNewtonMethod	private
mMaxDurationForward	CNewtonMethod	private
mMethodLog	CSteadyStateMethod	protected
mObjectDisplayName	CDataObject	mutableprivate
mObjectFlag	CDataObject	private
mObjectName	CDataObject	private
mObjects	CDataContainer	protected
mObjectType	CDataObject	private
ModelEntity enum value	CDataObject
mpContainer	CCopasiMethod	protected
mpContainerStateTime	CSteadyStateMethod	protected
mpDefault	CCopasiParameter	protected
mpDerivationFactor	CSteadyStateMethod	protected
mpDerivationResolution	CSteadyStateMethod	protected
mpElementTemplates	CCopasiParameterGroup	private
mpJacobian	CSteadyStateMethod	protected
mpObjectDisplayName	CDataObject	mutableprivate
mpObjectName	CDataObject	mutableprivate
mpObjectParent	CDataObject	private
mpParentTask	CSteadyStateMethod	protected
mpProblem	CSteadyStateMethod	protected
mPrerequisits	CDataObject	protected
mProcessReport	CCopasiMethod	protected
mpSSResolution	CSteadyStateMethod	protected
mpTrajectory	CNewtonMethod	private
mpUuid	CUndoObjectInterface	private
mpValidValues	CCopasiParameter	protected
mpValue	CCopasiParameter	protected
mpValueReference	CCopasiParameter	mutableprotected
mpX	CNewtonMethod	private
mReferencedValidities	CDataObject	private
mReferences	CDataObject	protected
mStartState	CNewtonMethod	private
mSteadyState	CSteadyStateMethod	protected
mSubType	CCopasiMethod	private
mTargetCriterion	CNewtonMethod	private
mTargetDistance	CNewtonMethod	private
mTargetRate	CNewtonMethod	private
mTaskType	CCopasiMethod	private
mType	CCopasiParameter	private
mUpdateConcentrations	CNewtonMethod	private
mUseBackIntegration	CNewtonMethod	private
mUseIntegration	CNewtonMethod	private
mUseNewton	CNewtonMethod	private
mUserInterfaceFlag	CCopasiParameter	protected
mUuidLocked	CUndoObjectInterface	private
mValidity	CObjectInterface	mutableprotected
mXold	CNewtonMethod	private
name_iterator typedef	CCopasiParameterGroup
NameVector enum value	CDataObject
negativeValueFound enum value	CNewtonMethod	private
NewtonResultCode enum name	CNewtonMethod	private
NonUniqueName enum value	CDataObject
notFound enum value	CNewtonMethod	private
objectMap typedef	CDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)	CDataContainer
ObjectSet typedef	CObjectInterface
operator=(const CCopasiMethod &rhs)	CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)	CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)	CCopasiParameter
prerequisitsContains(const DataObjectSet &objects) const	CDataObject
print(std::ostream *ostream) const	CCopasiMethod	virtual
printResult(std::ostream *ostream) const	CCopasiMethod	virtual
process(CVectorCore< C_FLOAT64 > &State, CMatrix< C_FLOAT64 > &jacobianX, CProcessReportLevel handler)	CSteadyStateMethod
processInternal()	CNewtonMethod	virtual
processNewton()	CNewtonMethod	private
Reference enum value	CDataObject
refreshAggregateValidity()	CDataObject	private
remove(CDataObject *pObject)	CCopasiParameterGroup	virtual
removeIssue(const CIssue &issue)	CDataObject
removeParameter(const std::string &name)	CCopasiParameterGroup
removeParameter(const size_t &index)	CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
removeReference(const CDataContainer *pReference)	CDataObject
ReturnCode enum name	CSteadyStateMethod
returnProcess(bool steadyStateFound)	CSteadyStateMethod	protectedvirtual
Root enum value	CDataObject
sanitizeObjectName(std::string &name)	CDataObject	static
Separator enum value	CDataObject
setCallBack(CProcessReportLevel callBack)	CCopasiMethod	virtual
setDefault(const CType &defaultValue)	CCopasiParameter	inline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)	CCopasiParameter
setMathContainer(CMathContainer *pContainer)	CCopasiMethod
setObjectName(const std::string &name)	CDataObject
setObjectParent(const CDataContainer *pParent) override	CCopasiParameter	virtual
setUserInterfaceFlag(const UserInterfaceFlag &flag)	CCopasiParameterGroup	virtual
setUuid(const xg::Guid &uuid)	CUndoObjectInterface
setUuid(const std::string &uuid)	CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)	CCopasiParameter	inline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)	CCopasiParameter	inline
setValue(const std::string &name, const CType &value)	CCopasiParameterGroup	inline
setValue(const size_t &index, const CType &value)	CCopasiParameterGroup	inline
CCopasiParameter::setValue(const CType &value)	CCopasiParameter	inline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)	CCopasiParameter
signalMathContainerChanged()	CCopasiMethod	protectedvirtual
singularJacobian enum value	CNewtonMethod	private
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const	CCopasiParameterGroup
StaticString enum value	CDataObject
stepSuccesful enum value	CNewtonMethod	private
swap(const size_t &iFrom, const size_t &iTo)	CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)	CCopasiParameterGroup
TargetCriterion	CNewtonMethod	static
targetFunction()	CNewtonMethod
targetFunctionDistance()	CNewtonMethod	private
targetFunctionRate()	CNewtonMethod	private
targetValueToString() const	CNewtonMethod	private
toData() const	CCopasiParameterGroup	virtual
Type enum name	CCopasiParameter
TypeName	CCopasiParameter	static
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)	CCopasiParameterGroup	virtual
UserInterfaceFlag typedef	CCopasiParameter
validityChanged(const CValidity &changedValidity) override	CDataObject	virtual
validityRemoved(const CValidity &changedValidity)	CDataObject
ValueBool enum value	CDataObject
ValueDbl enum value	CDataObject
ValueInt enum value	CDataObject
ValueInt64 enum value	CDataObject
ValueString enum value	CDataObject
Vector enum value	CDataObject
XMLType	CCopasiParameter	static
~CCopasiMethod()	CCopasiMethod	virtual
~CCopasiParameter()	CCopasiParameter	virtual
~CCopasiParameterGroup()	CCopasiParameterGroup	virtual
~CDataContainer()	CDataContainer	virtual
~CDataObject()	CDataObject	virtual
~CNewtonMethod()	CNewtonMethod
~CObjectInterface()	CObjectInterface	virtual
~CSteadyStateMethod()	CSteadyStateMethod
~CUndoObjectInterface()	CUndoObjectInterface	virtual