#include <CMetab.h>

Inheritance diagram for CMetabOld:

Public Member Functions
virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

void	cleanup ()

	CMetabOld (const CMetabOld &src, const CDataContainer *pParent)

	CMetabOld (const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT)

C_INT32	getIndex () const

C_INT32	load (CReadConfig &configbuffer)

virtual CData	toData () const

	~CMetabOld ()

Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)

virtual bool	appendDeletedDependentData (CUndoData &undoData) const

	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)

	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override

virtual std::string	getChildObjectUnits (const CDataObject *pObject) const

void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const

virtual size_t	getIndex (const CDataObject *pObject) const

virtual const CObjectInterface *	getObject (const CCommonName &cn) const override

virtual objectMap &	getObjects ()

virtual const objectMap &	getObjects () const

virtual const std::string	getUnits () const override

virtual const CDataObject *	getValueObject () const override

virtual CUndoObjectInterface *	insert (const CData &data) override

void	objectRenamed (CDataObject *pObject, const std::string &oldName)

virtual bool	remove (CDataObject *pObject)

virtual	~CDataContainer ()

Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)

void	addReference (const CDataContainer *pReference)

virtual void	calculateValue () override

	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)

virtual void	destruct () override

virtual CCommonName	getCN () const override

virtual const CDataObject *	getDataObject () const override

virtual const std::string &	getKey () const

CDataContainer *	getObjectAncestor (const std::string &type) const

CDataModel *	getObjectDataModel () const

virtual std::string	getObjectDisplayName () const override

const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const

const std::string &	getObjectName () const

CDataContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override

virtual const CValidity &	getValidity () const override

virtual void *	getValuePointer () const override

bool	hasFlag (const Flag &flag) const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override

bool	prerequisitsContains (const DataObjectSet &objects) const

virtual void	print (std::ostream *ostream) const override

void	removeIssue (const CIssue &issue)

void	removeReference (const CDataContainer *pReference)

bool	setObjectName (const std::string &name)

virtual bool	setObjectParent (const CDataContainer *pParent)

void	validityChanged (const CValidity &changedValidity) override

void	validityRemoved (const CValidity &changedValidity)

virtual	~CDataObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

	CObjectInterface (const CObjectInterface &src)

virtual	~CObjectInterface ()

Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()

	CUndoObjectInterface (const CUndoObjectInterface &src)

bool	generateUuid ()

const xg::Guid &	getUuid () const

bool	setUuid (const std::string &uuid)

bool	setUuid (const xg::Guid &uuid)

virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)

virtual	~CUndoObjectInterface ()

Static Public Member Functions
static CMetabOld *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)

static void	sanitizeObjectName (std::string &name)

Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)

static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)

Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Private Attributes
C_INT32	mCompartment

C_FLOAT64	mIConc

CMetab::Status	mStatus

Friends
class	CMetab

Additional Inherited Members
Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap

Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet

enum	Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE }

Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList

typedef std::set< const CObjectInterface * >	ObjectSet

Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

	CDataContainer (const CDataContainer &src)

void	initObjects ()

Protected Member Functions inherited from CDataObject
	CDataObject ()

	CDataObject (const std::string &name, const CDataContainer pParent=static_cast< CDataContainer >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Attributes inherited from CDataContainer
objectMap	mObjects

Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits

std::set< CDataContainer * >	mReferences

Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Constructor & Destructor Documentation

◆ CMetabOld() [1/2]

CMetabOld::CMetabOld	(	const std::string &	name = `"NoName"`,
		const CDataContainer *	pParent = `NO_PARENT`
	)

Default constructor

Parameters

const	std::string & name (default: "NoName")
const	CDataContainer * pParent (default: NULL)

References CONSTRUCTOR_TRACE.

Referenced by fromData().

◆ CMetabOld() [2/2]

CMetabOld::CMetabOld	(	const CMetabOld &	src,
		const CDataContainer *	pParent
	)

Copy constructor

Parameters

const	CMetabOld & src
const	CDataContainer * pParent (default: NULL)

References CONSTRUCTOR_TRACE.

◆ ~CMetabOld()

CMetabOld::~CMetabOld ( )

Destructor.

References DESTRUCTOR_TRACE.

Member Function Documentation

◆ applyData()

bool CMetabOld::applyData	(	const CData &	data,
		CUndoData::CChangeSet &	changes
	)

virtual

Apply the provided data to the object

Parameters

const CData & data

Returns: bool success

Reimplemented from CDataContainer.

References fatalError.

◆ cleanup()

void CMetabOld::cleanup ( )

cleanup()

◆ fromData()

CMetabOld * CMetabOld::fromData	(	const CData &	data,
		CUndoObjectInterface *	pParent
	)

static

Static method to create a CDataObject based on the provided data

Parameters

const CData & data

Returns: CMetabOld * pDataObject

References CMetabOld(), CData::getProperty(), NO_PARENT, CData::OBJECT_NAME, and CDataValue::toString().

◆ getIndex()

C_INT32 CMetabOld::getIndex ( ) const

References mCompartment.

◆ load()

C_INT32 CMetabOld::load ( CReadConfig & configbuffer )

Loads an object with data coming from a CReadConfig object. (CReadConfig object reads an input stream)

Parameters

pconfigbuffer reference to a CReadConfig object.

Returns: Fail

References C_INT32, CModelEntity::FIXED, CDataObject::getObjectName(), CReadConfig::getVariable(), mCompartment, METAB_MOIETY, mIConc, mStatus, CModelEntity::REACTIONS, CReadConfig::SEARCH, CDataObject::setObjectName(), and CCopasiMessage::WARNING.

◆ toData()

CData CMetabOld::toData ( ) const

virtual

Retrieve the data describing the object

Returns: CData data

Reimplemented from CDataContainer.

References fatalError.

Friends And Related Function Documentation

◆ CMetab

friend class CMetab

friend

Member Data Documentation

◆ mCompartment

C_INT32 CMetabOld::mCompartment

private

Index of the compartment the metabolite is located in.

Referenced by getIndex(), and load().

◆ mIConc

C_FLOAT64 CMetabOld::mIConc

private

Concentration of the metabolite.

Referenced by load(), and CMetab::operator=().

◆ mStatus

CMetab::Status CMetabOld::mStatus

private

Status of the metabolite. One of (METAB_FIXED, METAB_VARIABLE, METAB_DEPENDENT, METAB_MOIETY).

Referenced by load(), and CMetab::operator=().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Private Attributes

Friends

Additional Inherited Members

Constructor & Destructor Documentation

◆ CMetabOld() [1/2]

◆ CMetabOld() [2/2]

◆ ~CMetabOld()

Member Function Documentation

◆ applyData()

◆ cleanup()

◆ fromData()

◆ getIndex()

◆ load()

◆ toData()

Friends And Related Function Documentation

◆ CMetab

Member Data Documentation

◆ mCompartment

◆ mIConc

◆ mStatus