#include <CSBMLunitInterface.h>

Classes
class	CEnvironmentInformation

class	CExpressionInformation

class	EvaluationResult

class	Statistics

Public Member Functions
void	calculateStatistics ()

	CSBMLunitInterface (Model *model, bool unitsFromModel)

void	debugOutput () const

void	determineUnits ()

const std::vector< CExpressionInformation > &	getExpressions () const

const std::set< const ASTNode * > &	getListOfConflictingNodes () const

std::vector< std::pair< std::string, std::string > >	getListOfLocalParametersWithGivenUnitStatus (int status) const

std::vector< std::string >	getListOfObjectsWithGivenUnitStatus (int status) const

CSBMLunitInformation *	getMappedUnitFromIdentifier (const std::string &node, const CEnvironmentInformation &ei)

CSBMLunitInformation *	getMappedUnitFromNumberNode (const ASTNode *node)

std::string	getMessageAboutUnknownUnits () const

Model *	getModel ()

const Model *	getModel () const

const Statistics &	getStatistics () const

void	setAssumeDimensionlessOne (bool f)

void	writeBackToModel ()

	~CSBMLunitInterface ()

Static Public Member Functions
static void	outputStatistics (const Statistics &stat, bool flag)

Private Member Functions
	CSBMLunitInterface (const CSBMLunitInterface &src)

EvaluationResult	evaluate (const ASTNode *node)

void	handleOneExpression (CExpressionInformation &ei)
	try to find out as much as possible about the units from one expression More...

CSBMLunitInformation	handleTerminalNode (const CSBMLunitInformation &ui, CSBMLunitInformation pNodeUnit, const ASTNode node)

void	initializeDefaultUnits ()
	initializes the base units with the defaults (moles, seconds, l, m, m^2) More...

void	initializeFromSBMLModel (bool unitsFromModel)

CSBMLunitInterface &	operator= (const CSBMLunitInterface &src)

CSBMLunitInformation	recursion (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

CSBMLunitInformation	recursionDivide (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

CSBMLunitInformation	recursionEqual (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

CSBMLunitInformation	recursionPiecewise (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

CSBMLunitInformation	recursionPower (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

CSBMLunitInformation	recursionTimes (const ASTNode *node, const CSBMLunitInformation &ui, const CEnvironmentInformation &ei)

FunctionDefinition *	resolveFunctionName (const std::string &node)

ASTNode *	resolveVariableName (const std::string &node, const CEnvironmentInformation &ei)

Static Private Member Functions
static std::string	getIdentifier (const ASTNode *node)

static double	getValueFromNumberNode (const ASTNode *node)
	return the value of a number node More...

static bool	isBuiltInFunctionCall (const ASTNode *node)
	determines if the node contains a call to a built in function More...

static bool	isFunctionCall (const ASTNode *node)
	determines if the node contains a call to a function definition More...

static bool	isNumber (const ASTNode *node)
	determines if the node represents a number (integer, real, or rational) More...

static bool	isObject (const ASTNode *node)

static bool	isOperator (const ASTNode *node)

Private Attributes
bool	mAssumeDimensionlessOne

std::set< const ASTNode * >	mConflictingNodes
	contains the (terminal) nodes where a conflict appeared More...

int	mError

Model *	mpModel
	the sbml model from which this interface was initialized More...

CSBMLunitInformation *	mpSBMLAmountUnit

CSBMLunitInformation *	mpSBMLAreaUnit

CSBMLunitInformation *	mpSBMLConflictUnit

CSBMLunitInformation *	mpSBMLLengthUnit

CSBMLunitInformation *	mpSBMLTimeUnit

CSBMLunitInformation *	mpSBMLVolumeUnit

std::vector< CExpressionInformation >	mSBMLExpressions

unsigned int	mSBMLLevel

std::map< std::string, std::map< std::string, CSBMLunitInformation > >	mSBMLLocalParametersMap

std::map< const ASTNode *, CSBMLunitInformation >	mSBMLNumbersMap

std::map< std::string, CSBMLunitInformation >	mSBMLObjectsMap

unsigned int	mSBMLVersion

Statistics	mStatistics

Detailed Description

This class contains a copy of the unit information of an sbml model in the data structures the unit conversion algorithm can deal with. It contains lists of all objects/numbers that potentially can have units, and a list of all mathematical expressions in the sbml model that impose constraints on the units.

Constructor & Destructor Documentation

◆ CSBMLunitInterface() [1/2]

CSBMLunitInterface::CSBMLunitInterface ( const CSBMLunitInterface & src )

private

◆ CSBMLunitInterface() [2/2]

CSBMLunitInterface::CSBMLunitInterface	(	Model *	model,
		bool	unitsFromModel
	)

initialize the unit interface from an sbml model, extracting all the unit information from the model

References initializeDefaultUnits(), initializeFromSBMLModel(), mpModel, mSBMLLevel, and mSBMLVersion.

◆ ~CSBMLunitInterface()

CSBMLunitInterface::~CSBMLunitInterface ( )

Destructor.

References mpSBMLAmountUnit, mpSBMLAreaUnit, mpSBMLConflictUnit, mpSBMLLengthUnit, mpSBMLTimeUnit, mpSBMLVolumeUnit, and pdelete.

Member Function Documentation

◆ calculateStatistics()

void CSBMLunitInterface::calculateStatistics ( )

References CSBMLunitInterface::Statistics::all, CSBMLunitInterface::Statistics::global, CSBMLunitInterface::Statistics::local, mSBMLLocalParametersMap, mSBMLNumbersMap, mSBMLObjectsMap, mStatistics, and CSBMLunitInterface::Statistics::numbers.

Referenced by determineUnits(), and initializeFromSBMLModel().

◆ debugOutput()

void CSBMLunitInterface::debugOutput ( ) const

initialize the unit interface from an sbml model, without using any unit information from the model

References CSBMLunitInformation::getDisplayString(), CSBMLunitInterface::CExpressionInformation::mErrorCode, CSBMLunitInterface::CExpressionInformation::mPerTime, CSBMLunitInterface::CExpressionInformation::mpExpression, mpSBMLAmountUnit, mpSBMLAreaUnit, mpSBMLLengthUnit, mpSBMLTimeUnit, mpSBMLVolumeUnit, CSBMLunitInterface::CExpressionInformation::mReactionId, CSBMLunitInterface::CExpressionInformation::mRootObject, CSBMLunitInterface::CExpressionInformation::mRootUnit, mSBMLExpressions, mSBMLLocalParametersMap, and mSBMLObjectsMap.

◆ determineUnits()

void CSBMLunitInterface::determineUnits ( )

Tries to determine unknown units by considering the known units and all the contrains imposed by the mathmatical expressions.

References calculateStatistics(), CSBMLunitInformation::getDisplayString(), handleOneExpression(), mConflictingNodes, CSBMLunitInterface::CExpressionInformation::mPerTime, CSBMLunitInterface::CExpressionInformation::mpExpression, mpModel, CSBMLunitInterface::CExpressionInformation::mReactionId, CSBMLunitInterface::CExpressionInformation::mRootObject, CSBMLunitInterface::CExpressionInformation::mRootUnit, and mSBMLExpressions.

◆ evaluate()

CSBMLunitInterface::EvaluationResult CSBMLunitInterface::evaluate ( const ASTNode * node )

private

References getValueFromNumberNode(), isNumber(), CSBMLunitInterface::EvaluationResult::known, and CSBMLunitInterface::EvaluationResult::result.

Referenced by recursionPower().

◆ getExpressions()

const std::vector<CExpressionInformation>& CSBMLunitInterface::getExpressions ( ) const

inline

return the list of all mathematical expressions including additional information

References mSBMLExpressions.

◆ getIdentifier()

std::string CSBMLunitInterface::getIdentifier ( const ASTNode * node )

staticprivate

Referenced by recursion().

◆ getListOfConflictingNodes()

const std::set< const ASTNode * > & CSBMLunitInterface::getListOfConflictingNodes ( ) const

after determineUnits() was called this contains a set of terminal ASTNodes in which a conflict was detected. Note that is not necessarily where one would intuitively locate the conflict, i's just where it was detected.

References mConflictingNodes.

Referenced by Expression2PresentationMMLUnits::writeMathMLName(), and Expression2PresentationMMLUnits::writeMathMLNumber().

◆ getListOfLocalParametersWithGivenUnitStatus()

std::vector< std::pair< std::string, std::string > > CSBMLunitInterface::getListOfLocalParametersWithGivenUnitStatus ( int status ) const

returns a list of pairs of sbml IDs corresponding to all local parameters that match the given unit status (as explained above)

References mSBMLLocalParametersMap.

Referenced by getMessageAboutUnknownUnits().

◆ getListOfObjectsWithGivenUnitStatus()

std::vector< std::string > CSBMLunitInterface::getListOfObjectsWithGivenUnitStatus ( int status ) const

returns a list of sbml id corresponding to all global sbml objects that match the given unit status (as explained above)

References mSBMLObjectsMap.

Referenced by getMessageAboutUnknownUnits().

◆ getMappedUnitFromIdentifier()

CSBMLunitInformation * CSBMLunitInterface::getMappedUnitFromIdentifier	(	const std::string &	node,
		const CEnvironmentInformation &	ei
	)

provided with an identifier from an object node, this method tries to find the mapped unit information. According to the provided environment, this could be a local parameter or a global object.

References CSBMLunitInterface::CEnvironmentInformation::isReactionScope(), CSBMLunitInterface::CEnvironmentInformation::mReactionID, mSBMLLocalParametersMap, and mSBMLObjectsMap.

Referenced by handleOneExpression(), recursion(), writeBackToModel(), and Expression2PresentationMMLUnits::writeMathMLName().

◆ getMappedUnitFromNumberNode()

CSBMLunitInformation * CSBMLunitInterface::getMappedUnitFromNumberNode ( const ASTNode * node )

find the unit information corresponding to a number node

References mSBMLNumbersMap.

Referenced by Expression2PresentationMMLUnits::writeMathMLNumber().

◆ getMessageAboutUnknownUnits()

std::string CSBMLunitInterface::getMessageAboutUnknownUnits ( ) const

generates a message containing a list of the objects with unknown units. The message should be suitable for presentation in a user interface.

References getListOfLocalParametersWithGivenUnitStatus(), getListOfObjectsWithGivenUnitStatus(), and mpModel.

◆ getModel() [1/2]

Model* CSBMLunitInterface::getModel ( )

inline

retrieve the SBML model

References mpModel.

Referenced by Expression2PresentationMMLUnits::setUnitInterface().

◆ getModel() [2/2]

const Model* CSBMLunitInterface::getModel ( ) const

inline

References mpModel.

◆ getStatistics()

const Statistics& CSBMLunitInterface::getStatistics ( ) const

inline

get statistics of the units of the model. In each of the vectors: 0: unknown 1: default 2: model wide provided units 3: provided units 4: derived units 5: conflict

References mStatistics.

◆ getValueFromNumberNode()

double CSBMLunitInterface::getValueFromNumberNode ( const ASTNode * node )

staticprivate

return the value of a number node

Referenced by evaluate(), and recursion().

◆ handleOneExpression()

void CSBMLunitInterface::handleOneExpression ( CExpressionInformation & ei )

private

try to find out as much as possible about the units from one expression

References CSBMLunitInformation::getInfo(), getMappedUnitFromIdentifier(), handleTerminalNode(), CSBMLunit::invert(), mError, CSBMLunitInterface::CExpressionInformation::mErrorCode, CSBMLunitInterface::CExpressionInformation::mPerTime, CSBMLunitInterface::CExpressionInformation::mpExpression, mpSBMLTimeUnit, CSBMLunitInterface::CExpressionInformation::mReactionId, CSBMLunitInterface::CEnvironmentInformation::mReactionID, CSBMLunitInterface::CExpressionInformation::mRootObject, CSBMLunitInterface::CExpressionInformation::mRootUnit, CSBMLunit::multiply(), recursion(), and CSBMLunitInformation::UNKNOWN.

Referenced by determineUnits().

◆ handleTerminalNode()

CSBMLunitInformation CSBMLunitInterface::handleTerminalNode	(	const CSBMLunitInformation &	ui,
		CSBMLunitInformation *	pNodeUnit,
		const ASTNode *	node
	)

private

This handles the units assignment/comparison/query for terminal node of the tree. ui is the unit information that is passed from above, pNodeUnit is the unit information that is already present in the terminal node, and the return value is the units of the node after the assignment/comparison/querying. mError is set to 1 if a conflict appears. The node is optional (it can be NULL), it is only used for reporting conflicts. If a new conflict appears the node pointer is added to the mConflictingNodes set.

References CSBMLunitInformation::DERIVED, CSBMLunitInformation::getInfo(), CSBMLunitInformation::isConflict(), CSBMLunit::isEqual(), mConflictingNodes, mError, CSBMLunitInformation::setConflict(), CSBMLunitInformation::setInfo(), and CSBMLunitInformation::UNKNOWN.

Referenced by handleOneExpression(), and recursion().

◆ initializeDefaultUnits()

void CSBMLunitInterface::initializeDefaultUnits ( )

private

initializes the base units with the defaults (moles, seconds, l, m, m^2)

References CSBMLunitInformation::DEFAULT, mpSBMLAmountUnit, mpSBMLAreaUnit, mpSBMLConflictUnit, mpSBMLLengthUnit, mpSBMLTimeUnit, mpSBMLVolumeUnit, mSBMLLevel, mSBMLVersion, and CSBMLunitInformation::UNKNOWN.

Referenced by CSBMLunitInterface().

◆ initializeFromSBMLModel()

void CSBMLunitInterface::initializeFromSBMLModel ( bool unitsFromModel )

private

initialize from sbml model. If unitsFromModel is true the unit information is extracted from the model. Otherwise the units are constructed from a set of base units that was provided by initializeSetOfUnits(). .

References calculateStatistics(), CSBMLunitInformation::DEFAULT, CSBMLunitInformation::getInfo(), CSBMLunitInformation::GLOBAL, CSBMLunit::invert(), CSBMLunitInterface::CExpressionInformation::mObjectDisplayString, CSBMLunitInterface::CExpressionInformation::mPerTime, CSBMLunitInterface::CExpressionInformation::mpExpression, mpModel, mpSBMLAmountUnit, mpSBMLConflictUnit, CSBMLunitInterface::CExpressionInformation::mReactionId, CSBMLunitInterface::CExpressionInformation::mRootObject, CSBMLunitInterface::CExpressionInformation::mRootUnit, mSBMLExpressions, mSBMLLevel, mSBMLLocalParametersMap, mSBMLNumbersMap, mSBMLObjectsMap, mSBMLVersion, CSBMLunitInterface::CExpressionInformation::mTypeDescription, CSBMLunit::multiply(), CSBMLunitInformation::PROVIDED, CSBMLunitInformation::setInfo(), and CSBMLunitInformation::UNKNOWN.

Referenced by CSBMLunitInterface().

◆ isBuiltInFunctionCall()

bool CSBMLunitInterface::isBuiltInFunctionCall ( const ASTNode * node )

staticprivate

determines if the node contains a call to a built in function

Referenced by recursion().

◆ isFunctionCall()

bool CSBMLunitInterface::isFunctionCall ( const ASTNode * node )

staticprivate

determines if the node contains a call to a function definition

Referenced by recursion().

◆ isNumber()

bool CSBMLunitInterface::isNumber ( const ASTNode * node )

staticprivate

determines if the node represents a number (integer, real, or rational)

Referenced by evaluate(), and recursion().

◆ isObject()

bool CSBMLunitInterface::isObject ( const ASTNode * node )

staticprivate

Referenced by recursion().

◆ isOperator()

bool CSBMLunitInterface::isOperator ( const ASTNode * node )

staticprivate

Referenced by recursion().

◆ operator=()

CSBMLunitInterface& CSBMLunitInterface::operator= ( const CSBMLunitInterface & src )

private

◆ outputStatistics()

void CSBMLunitInterface::outputStatistics	(	const Statistics &	stat,
		bool	flag
	)

static

References CSBMLunitInterface::Statistics::all, CSBMLunitInterface::Statistics::global, CSBMLunitInterface::Statistics::local, and CSBMLunitInterface::Statistics::numbers.

◆ recursion()

CSBMLunitInformation CSBMLunitInterface::recursion	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

◆ recursionDivide()

CSBMLunitInformation CSBMLunitInterface::recursionDivide	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

handle a division node. If one unit is unknown it can be calculated. If no unit is unknown a consistency check can be made. If more than one unit is unknown, nothing can be done.

References CSBMLunitInformation::DERIVED, CSBMLunitInformation::getInfo(), CSBMLunit::invert(), mSBMLLevel, mSBMLVersion, CSBMLunit::multiply(), recursion(), CSBMLunitInformation::setInfo(), and CSBMLunitInformation::UNKNOWN.

Referenced by recursion().

◆ recursionEqual()

CSBMLunitInformation CSBMLunitInterface::recursionEqual	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

handle the case of a node where the units are supposed to be equal. This includes plus, minus, choice, comparison operators

References CSBMLunitInformation::getInfo(), mSBMLLevel, mSBMLVersion, recursion(), and CSBMLunitInformation::UNKNOWN.

Referenced by recursion().

◆ recursionPiecewise()

CSBMLunitInformation CSBMLunitInterface::recursionPiecewise	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

handle the case of a pieewise node

References CSBMLunitInformation::getInfo(), mSBMLLevel, mSBMLVersion, recursion(), and CSBMLunitInformation::UNKNOWN.

Referenced by recursion().

◆ recursionPower()

CSBMLunitInformation CSBMLunitInterface::recursionPower	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

References CSBMLunit::applyExponent(), CSBMLunit::applyInverseExponent(), CSBMLunitInformation::DEFAULT, CSBMLunitInformation::DERIVED, evaluate(), CSBMLunitInformation::getInfo(), CSBMLunitInterface::EvaluationResult::known, CSBMLunitInterface::CEnvironmentInformation::mFrameStack, mSBMLLevel, mSBMLVersion, recursion(), CSBMLunitInterface::EvaluationResult::result, CSBMLunitInformation::setInfo(), and CSBMLunitInformation::UNKNOWN.

Referenced by recursion().

◆ recursionTimes()

CSBMLunitInformation CSBMLunitInterface::recursionTimes	(	const ASTNode *	node,
		const CSBMLunitInformation &	ui,
		const CEnvironmentInformation &	ei
	)

private

handle a multiplication node. If one unit is unknown it can be calculated. If no unit is unknown a consistency check can be made. If more than one unit is unknown, nothing can be done.

References CSBMLunitInformation::DERIVED, CSBMLunitInformation::getInfo(), CSBMLunit::invert(), mSBMLLevel, mSBMLVersion, CSBMLunit::multiply(), recursion(), CSBMLunitInformation::setInfo(), and CSBMLunitInformation::UNKNOWN.

Referenced by recursion().

◆ resolveFunctionName()

FunctionDefinition * CSBMLunitInterface::resolveFunctionName ( const std::string & node )

private

provided with an identifier from an object node, this method checks if it corresponds to a function definition in the current model. If it does, the FunctionDefinition* is returned, else NULL.

References mpModel.

Referenced by recursion().

◆ resolveVariableName()

ASTNode * CSBMLunitInterface::resolveVariableName	(	const std::string &	node,
		const CEnvironmentInformation &	ei
	)

private

provided with an identifier from an object node, this method checks if it corresponds to a function variable from the current environment. If it does, the ASTNode* is returned, else NULL.

References CSBMLunitInterface::CEnvironmentInformation::mFrameStack.

Referenced by recursion().

◆ setAssumeDimensionlessOne()

void CSBMLunitInterface::setAssumeDimensionlessOne ( bool f )

inline

References mAssumeDimensionlessOne.

◆ writeBackToModel()

void CSBMLunitInterface::writeBackToModel ( )

Writes the units information back to an sbml model (without any unit conversions). The most common use case for this will be to annotate the model with units of objects that did not have explicit units before, e.g. parameters.

References CSBMLunitInformation::DERIVED, CSBMLunitInformation::getInfo(), getMappedUnitFromIdentifier(), CSBMLunit::getSBMLUnitDefinition(), CSBMLunit::getSymbolicExpExp(), and mpModel.

Member Data Documentation

◆ mAssumeDimensionlessOne

bool CSBMLunitInterface::mAssumeDimensionlessOne

private

indicated whether a number 1.0 and -1.0 is considered to be dimensionless

Referenced by recursion(), and setAssumeDimensionlessOne().

◆ mConflictingNodes

std::set<const ASTNode *> CSBMLunitInterface::mConflictingNodes

private

contains the (terminal) nodes where a conflict appeared

Referenced by determineUnits(), getListOfConflictingNodes(), and handleTerminalNode().

◆ mError

int CSBMLunitInterface::mError

private

Referenced by handleOneExpression(), and handleTerminalNode().

◆ mpModel

Model* CSBMLunitInterface::mpModel

private

the sbml model from which this interface was initialized

Referenced by CSBMLunitInterface(), determineUnits(), getMessageAboutUnknownUnits(), getModel(), initializeFromSBMLModel(), resolveFunctionName(), and writeBackToModel().

◆ mpSBMLAmountUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLAmountUnit

private

Referenced by debugOutput(), initializeDefaultUnits(), initializeFromSBMLModel(), and ~CSBMLunitInterface().

◆ mpSBMLAreaUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLAreaUnit

private

Referenced by debugOutput(), initializeDefaultUnits(), and ~CSBMLunitInterface().

◆ mpSBMLConflictUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLConflictUnit

private

Referenced by initializeDefaultUnits(), initializeFromSBMLModel(), recursion(), and ~CSBMLunitInterface().

◆ mpSBMLLengthUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLLengthUnit

private

Referenced by debugOutput(), initializeDefaultUnits(), and ~CSBMLunitInterface().

◆ mpSBMLTimeUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLTimeUnit

private

Referenced by debugOutput(), handleOneExpression(), initializeDefaultUnits(), and ~CSBMLunitInterface().

◆ mpSBMLVolumeUnit

CSBMLunitInformation* CSBMLunitInterface::mpSBMLVolumeUnit

private

Referenced by debugOutput(), initializeDefaultUnits(), and ~CSBMLunitInterface().

◆ mSBMLExpressions

std::vector<CExpressionInformation> CSBMLunitInterface::mSBMLExpressions

private

a list of all mathematical expressions in the sbml model along with the units information for their root node.

Referenced by debugOutput(), determineUnits(), getExpressions(), and initializeFromSBMLModel().

◆ mSBMLLevel

unsigned int CSBMLunitInterface::mSBMLLevel

private

Referenced by CSBMLunitInterface(), initializeDefaultUnits(), initializeFromSBMLModel(), recursion(), recursionDivide(), recursionEqual(), recursionPiecewise(), recursionPower(), and recursionTimes().

◆ mSBMLLocalParametersMap

std::map<std::string, std::map<std::string, CSBMLunitInformation> > CSBMLunitInterface::mSBMLLocalParametersMap

private

This maps the id of a reaction and the id of a local parameter to a copy of its units information. (Local parameters are the only objects in sbml that need two ids for their identification)

Referenced by calculateStatistics(), debugOutput(), getListOfLocalParametersWithGivenUnitStatus(), getMappedUnitFromIdentifier(), and initializeFromSBMLModel().

◆ mSBMLNumbersMap

std::map<const ASTNode*, CSBMLunitInformation> CSBMLunitInterface::mSBMLNumbersMap

private

This maps number nodes to units information

Referenced by calculateStatistics(), getMappedUnitFromNumberNode(), initializeFromSBMLModel(), and recursion().

◆ mSBMLObjectsMap

std::map<std::string, CSBMLunitInformation> CSBMLunitInterface::mSBMLObjectsMap

private

This maps the id of any sbml object that can be referenced by one id to a copy of its units information.

Referenced by calculateStatistics(), debugOutput(), getListOfObjectsWithGivenUnitStatus(), getMappedUnitFromIdentifier(), and initializeFromSBMLModel().

◆ mSBMLVersion

unsigned int CSBMLunitInterface::mSBMLVersion

private

Referenced by CSBMLunitInterface(), initializeDefaultUnits(), initializeFromSBMLModel(), recursion(), recursionDivide(), recursionEqual(), recursionPiecewise(), recursionPower(), and recursionTimes().

◆ mStatistics

Statistics CSBMLunitInterface::mStatistics

private

Referenced by calculateStatistics(), and getStatistics().

The documentation for this class was generated from the following files:

Classes

Public Member Functions

Static Public Member Functions

Private Member Functions

Static Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ CSBMLunitInterface() [1/2]

◆ CSBMLunitInterface() [2/2]

◆ ~CSBMLunitInterface()

Member Function Documentation

◆ calculateStatistics()

◆ debugOutput()

◆ determineUnits()

◆ evaluate()

◆ getExpressions()

◆ getIdentifier()

◆ getListOfConflictingNodes()

◆ getListOfLocalParametersWithGivenUnitStatus()

◆ getListOfObjectsWithGivenUnitStatus()

◆ getMappedUnitFromIdentifier()

◆ getMappedUnitFromNumberNode()

◆ getMessageAboutUnknownUnits()

◆ getModel() [1/2]

◆ getModel() [2/2]

◆ getStatistics()

◆ getValueFromNumberNode()

◆ handleOneExpression()

◆ handleTerminalNode()

◆ initializeDefaultUnits()

◆ initializeFromSBMLModel()

◆ isBuiltInFunctionCall()

◆ isFunctionCall()

◆ isNumber()

◆ isObject()

◆ isOperator()

◆ operator=()

◆ outputStatistics()

◆ recursion()

◆ recursionDivide()

◆ recursionEqual()

◆ recursionPiecewise()

◆ recursionPower()

◆ recursionTimes()

◆ resolveFunctionName()

◆ resolveVariableName()

◆ setAssumeDimensionlessOne()

◆ writeBackToModel()

Member Data Documentation

◆ mAssumeDimensionlessOne

◆ mConflictingNodes

◆ mError

◆ mpModel

◆ mpSBMLAmountUnit

◆ mpSBMLAreaUnit

◆ mpSBMLConflictUnit

◆ mpSBMLLengthUnit

◆ mpSBMLTimeUnit

◆ mpSBMLVolumeUnit

◆ mSBMLExpressions

◆ mSBMLLevel

◆ mSBMLLocalParametersMap

◆ mSBMLNumbersMap

◆ mSBMLObjectsMap

◆ mSBMLVersion

◆ mStatistics