CLayout Class Reference

#include <CLayout.h>

Inheritance diagram for CLayout:

Public Member Functions
void	addCompartmentGlyph (CLCompartmentGlyph *glyph)
void	addGeneralGlyph (CLGeneralGlyph *glyph)
void	addLocalRenderInformation (CLLocalRenderInformation *pRenderInfo)
void	addMetaboliteGlyph (CLMetabGlyph *glyph)
void	addReactionGlyph (CLReactionGlyph *glyph)
void	addTextGlyph (CLTextGlyph *glyph)
virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)
void	calculateAndAssignBounds ()
CLBoundingBox	calculateBoundingBox () const
	CLayout (const CLayout &src, const CDataContainer *pParent)
	CLayout (const Layout &sbml, std::map< std::string, std::string > &layoutmap, const CDataContainer *pParent=NO_PARENT)
	CLayout (const std::string &name="Layout", const CDataContainer *pParent=NO_PARENT)
void	exportToDotFile (std::ostream &os) const
void	exportToSBML (Layout *layout, const std::map< const CDataObject *, SBase * > &copasimodelmap, std::map< std::string, const SBase * > &sbmlIDs, const std::map< std::string, std::string > &globalKeyToIdMap) const
const CLDimensions &	getDimensions () const
virtual const std::string &	getKey () const
CDataVector< CLCompartmentGlyph > &	getListOfCompartmentGlyphs ()
const CDataVector< CLCompartmentGlyph > &	getListOfCompartmentGlyphs () const
CDataVector< CLGeneralGlyph > &	getListOfGeneralGlyphs ()
const CDataVector< CLGeneralGlyph > &	getListOfGeneralGlyphs () const
CDataVector< CLLocalRenderInformation > &	getListOfLocalRenderInformationObjects ()
const CDataVector< CLLocalRenderInformation > &	getListOfLocalRenderInformationObjects () const
CDataVector< CLMetabGlyph > &	getListOfMetaboliteGlyphs ()
const CDataVector< CLMetabGlyph > &	getListOfMetaboliteGlyphs () const
CDataVector< CLReactionGlyph > &	getListOfReactionGlyphs ()
const CDataVector< CLReactionGlyph > &	getListOfReactionGlyphs () const
CDataVector< CLTextGlyph > &	getListOfTextGlyphs ()
const CDataVector< CLTextGlyph > &	getListOfTextGlyphs () const
CLLocalRenderInformation *	getRenderInformation (size_t index)
const CLLocalRenderInformation *	getRenderInformation (size_t index) const
virtual void	moveBy (const CLPoint &p)
void	print (std::ostream *ostream) const
virtual void	scale (const double &scaleFactor)
void	setDimensions (const CLDimensions &d)
virtual CData	toData () const
	~CLayout ()
Public Member Functions inherited from CLBase
	CLBase ()
	CLBase (const CLBase &b)
	CLBase (const SBase &)
const std::string &	getTag () const
bool	hasTag () const
void	setTag (const std::string &tag)
virtual	~CLBase ()
Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)
virtual bool	appendDeletedDependentData (CUndoData &undoData) const
	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)
	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override
virtual std::string	getChildObjectUnits (const CDataObject *pObject) const
void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const
virtual size_t	getIndex (const CDataObject *pObject) const
virtual const CObjectInterface *	getObject (const CCommonName &cn) const override
virtual objectMap &	getObjects ()
virtual const objectMap &	getObjects () const
virtual const std::string	getUnits () const override
virtual const CDataObject *	getValueObject () const override
virtual CUndoObjectInterface *	insert (const CData &data) override
void	objectRenamed (CDataObject *pObject, const std::string &oldName)
virtual bool	remove (CDataObject *pObject)
virtual	~CDataContainer ()
Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)
void	addReference (const CDataContainer *pReference)
virtual void	calculateValue () override
	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)
virtual void	destruct () override
virtual CCommonName	getCN () const override
virtual const CDataObject *	getDataObject () const override
CDataContainer *	getObjectAncestor (const std::string &type) const
CDataModel *	getObjectDataModel () const
virtual std::string	getObjectDisplayName () const override
const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const
const std::string &	getObjectName () const
CDataContainer *	getObjectParent () const
const std::string &	getObjectType () const
virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override
virtual const CValidity &	getValidity () const override
virtual void *	getValuePointer () const override
bool	hasFlag (const Flag &flag) const
virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override
bool	prerequisitsContains (const DataObjectSet &objects) const
void	removeIssue (const CIssue &issue)
void	removeReference (const CDataContainer *pReference)
bool	setObjectName (const std::string &name)
virtual bool	setObjectParent (const CDataContainer *pParent)
void	validityChanged (const CValidity &changedValidity) override
void	validityRemoved (const CValidity &changedValidity)
virtual	~CDataObject ()
Public Member Functions inherited from CObjectInterface
	CObjectInterface ()
	CObjectInterface (const CObjectInterface &src)
virtual	~CObjectInterface ()
Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()
	CUndoObjectInterface (const CUndoObjectInterface &src)
bool	generateUuid ()
const xg::Guid &	getUuid () const
bool	setUuid (const std::string &uuid)
bool	setUuid (const xg::Guid &uuid)
virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)
virtual	~CUndoObjectInterface ()

Static Public Member Functions
static CLayout *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)
static void	sanitizeObjectName (std::string &name)
Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)
static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)
Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Protected Member Functions
	CLayout (const CLayout &src)
void	writeDotEdge (std::ostream &os, const std::string &id1, const std::string &id2, int t=0) const
void	writeDotNode (std::ostream &os, const std::string &id, const std::string &label, int t=0) const
Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
	CDataContainer (const CDataContainer &src)
void	initObjects ()
Protected Member Functions inherited from CDataObject
	CDataObject ()
	CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Attributes
CLDimensions	mDimensions
std::string	mKey
CDataVector< CLCompartmentGlyph >	mvCompartments
CDataVector< CLGeneralGlyph >	mvGraphicalObjects
CDataVector< CLTextGlyph >	mvLabels
CDataVector< CLLocalRenderInformation >	mvLocalRenderInformationObjects
CDataVector< CLMetabGlyph >	mvMetabs
CDataVector< CLReactionGlyph >	mvReactions
Protected Attributes inherited from CLBase
std::string	mTag
Protected Attributes inherited from CDataContainer
objectMap	mObjects
Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits
std::set< CDataContainer * >	mReferences
Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Friends
std::ostream &	operator<< (std::ostream &os, const CLayout &g)

Additional Inherited Members
Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap
Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet
enum	Flag {   Container , Vector , Matrix , NameVector ,   Reference , ValueBool , ValueInt , ValueInt64 ,   ValueDbl , NonUniqueName , StaticString , ValueString ,   Separator , DisplayName , ModelEntity , Array ,   DataModel , Root , Gui , __SIZE }
Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList
typedef std::set< const CObjectInterface * >	ObjectSet
Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Detailed Description

This class describes a reaction network layout. Its structure is exactly corresponding to the sbml layout extension

Constructor & Destructor Documentation

CLayout() [1/4]

CLayout::CLayout ( const CLayout &  src )

protected

Referenced by fromData().

CLayout() [2/4]

CLayout::CLayout	(	const std::string &	name = "Layout",
		const CDataContainer *	pParent = NO_PARENT
	)

CLayout() [3/4]

CLayout::CLayout	(	const CLayout &	src,
		const CDataContainer *	pParent
	)

References CDataVector< CType >::add(), CDataVector< CType >::begin(), CDataVector< CType >::end(), CLTextGlyph::getGraphicalObjectKey(), CDataObject::getKey(), CLGraphicalObject::getKey(), CLReactionGlyph::getListOfMetabReferenceGlyphs(), CLGeneralGlyph::getListOfReferenceGlyphs(), CLGeneralGlyph::getListOfSubglyphs(), CLMetabReferenceGlyph::getMetabGlyphKey(), CLReferenceGlyph::getTargetGlyphKey(), mvCompartments, mvGraphicalObjects, mvLabels, mvMetabs, mvReactions, NO_PARENT, CLTextGlyph::setGraphicalObjectKey(), CLMetabReferenceGlyph::setMetabGlyphKey(), and CLReferenceGlyph::setTargetGlyphKey().

CLayout() [4/4]

CLayout::CLayout	(	const Layout &	sbml,
		std::map< std::string, std::string > &	layoutmap,
		const CDataContainer *	pParent = NO_PARENT
	)

constructor from libsbml object. Does not read the whole libsbml tree. Additional work is done in SBMLDocumentLoader

References mKey, and CDataObject::setObjectName().

~CLayout()

CLayout::~CLayout

(

)

References CRootContainer::getKeyFactory(), mKey, and CKeyFactory::remove().

Member Function Documentation

addCompartmentGlyph()

void CLayout::addCompartmentGlyph

(

CLCompartmentGlyph *

glyph

)

add Glyph to layout. The layout takes ownership of the glyph.

References CDataVector< CType >::add(), and mvCompartments.

Referenced by CCopasiSpringLayout::createLayout(), SBMLDocumentLoader::createLayout(), and CompartmentGlyphHandler::processStart().

addGeneralGlyph()

void CLayout::addGeneralGlyph

(

CLGeneralGlyph *

glyph

)

add Glyph to layout. The layout takes ownership of the glyph.

References CDataVector< CType >::add(), and mvGraphicalObjects.

Referenced by CCopasiSpringLayout::createLayout(), SBMLDocumentLoader::createLayout(), and AdditionalGraphicalObjectHandler::processStart().

addLocalRenderInformation()

void CLayout::addLocalRenderInformation

(

CLLocalRenderInformation *

pRenderInfo

)

add local render information to layout. The layout takes ownership of the object.

References CDataVector< CType >::add(), and mvLocalRenderInformationObjects.

Referenced by SBMLDocumentLoader::createLayout(), and CXMLParserData::createRenderInformation().

addMetaboliteGlyph()

void CLayout::addMetaboliteGlyph

(

CLMetabGlyph *

glyph

)

add Glyph to layout. The layout takes ownership of the glyph.

References CDataVector< CType >::add(), and mvMetabs.

Referenced by CCopasiSpringLayout::createLayout(), SBMLDocumentLoader::createLayout(), and MetaboliteGlyphHandler::processStart().

addReactionGlyph()

void CLayout::addReactionGlyph

(

CLReactionGlyph *

glyph

)

add Glyph to layout. The layout takes ownership of the glyph.

References CDataVector< CType >::add(), and mvReactions.

Referenced by CCopasiSpringLayout::createLayout(), SBMLDocumentLoader::createLayout(), and ReactionGlyphHandler::processStart().

addTextGlyph()

void CLayout::addTextGlyph

(

CLTextGlyph *

glyph

)

add Glyph to layout. The layout takes ownership of the glyph.

References CDataVector< CType >::add(), and mvLabels.

Referenced by CCopasiSpringLayout::createLayout(), SBMLDocumentLoader::createLayout(), and TextGlyphHandler::processStart().

applyData()

bool CLayout::applyData ( const CData &  data, CUndoData::CChangeSet &  changes  )

virtual

Apply the provided data to the object

Parameters

const

CData & data

Returns

bool success

Reimplemented from CDataContainer.

References fatalError.

calculateAndAssignBounds()

void CLayout::calculateAndAssignBounds

(

)

Calculates the Bounding Box, moves the layout to the origin and assigns it to the layout.

References calculateBoundingBox(), CLBoundingBox::getDimensions(), CLBoundingBox::getPosition(), CLPoint::getX(), CLPoint::getY(), CLPoint::getZ(), moveBy(), and setDimensions().

Referenced by CCopasiSpringLayout::finalizeState().

calculateBoundingBox()

CLBoundingBox CLayout::calculateBoundingBox

(

)

const

This methods calculates the bounding box of the layout. It traverses all layout objects and looks for the minimal and maximal x and y values that occur in the layout. These values are returned in the form of a bounding box where the minimal values are stored in the position and the maxima are given as the minimal values plus the corresponding dimension.

References CLCurve::calculateBoundingBox(), CLGraphicalObject::getBoundingBox(), CLGlyphWithCurve::getCurve(), CLBoundingBox::getDimensions(), CLDimensions::getHeight(), getListOfCompartmentGlyphs(), getListOfGeneralGlyphs(), getListOfMetaboliteGlyphs(), CLReactionGlyph::getListOfMetabReferenceGlyphs(), getListOfReactionGlyphs(), CLGeneralGlyph::getListOfReferenceGlyphs(), getListOfTextGlyphs(), CLCurve::getNumCurveSegments(), CLBoundingBox::getPosition(), CLDimensions::getWidth(), CLPoint::getX(), CLPoint::getY(), max, and CDataVector< CType >::size().

Referenced by calculateAndAssignBounds(), and CCopasiSpringLayout::createLayout().

exportToDotFile()

void CLayout::exportToDotFile

(

std::ostream &

os

)

const

References CDataObject::getKey(), getKey(), CLMetabReferenceGlyph::getMetabGlyphKey(), CLMetabReferenceGlyph::getRole(), mvMetabs, mvReactions, CLMetabReferenceGlyph::PRODUCT, CDataVector< CType >::size(), CLMetabReferenceGlyph::SUBSTRATE, writeDotEdge(), and writeDotNode().

exportToSBML()

void CLayout::exportToSBML	(	Layout *	layout,
		const std::map< const CDataObject *, SBase * > &	copasimodelmap,
		std::map< std::string, const SBase * > &	sbmlIDs,
		const std::map< std::string, std::string > &	globalKeyToIdMap
	)		const

This method writes the information of the copasi layout object into the corresponding sbml object

References SBMLDocumentLoader::convertLayoutObjectKeys(), CSBMLExporter::createUniqueId(), CLTextGlyph::exportReferenceToSBML(), CLCompartmentGlyph::exportToSBML(), CLGeneralGlyph::exportToSBML(), CLReactionGlyph::exportToSBML(), CLMetabGlyph::exportToSBML(), CLTextGlyph::exportToSBML(), getKey(), CLGraphicalObject::getKey(), CLGeneralGlyph::getListOfReferenceGlyphs(), CDataObject::getObjectName(), CLDimensions::getSBMLDimensions(), CDataVector< CType >::insert(), CDataContainer::insert(), mDimensions, mvCompartments, mvGraphicalObjects, mvLabels, mvLocalRenderInformationObjects, mvMetabs, mvReactions, and CDataVector< CType >::size().

Referenced by CListOfLayouts::exportToSBML().

fromData()

CLayout * CLayout::fromData ( const CData &  data, CUndoObjectInterface *  pParent  )

static

Static method to create a CDataObject based on the provided data

Parameters

const

CData & data

Returns

CLayout * pDataObject

References CLayout(), CData::getProperty(), NO_PARENT, CData::OBJECT_NAME, and CDataValue::toString().

getDimensions()

const CLDimensions& CLayout::getDimensions ( ) const

inline

References mDimensions.

Referenced by CLLayoutRenderer::draw_layout(), CCopasiSpringLayout::randomize(), and CCopasiXML::saveLayoutList().

getKey()

virtual const std::string& CLayout::getKey ( ) const

inlinevirtual

Retrieves the key of the layout

Reimplemented from CDataObject.

References mKey.

Referenced by exportToDotFile(), exportToSBML(), and CCopasiXML::saveLayoutList().

getListOfCompartmentGlyphs() [1/2]

CDataVector<CLCompartmentGlyph>& CLayout::getListOfCompartmentGlyphs ( )

inline

References mvCompartments.

getListOfCompartmentGlyphs() [2/2]

const CDataVector<CLCompartmentGlyph>& CLayout::getListOfCompartmentGlyphs ( ) const

inline

References mvCompartments.

Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().

getListOfGeneralGlyphs() [1/2]

CDataVector<CLGeneralGlyph>& CLayout::getListOfGeneralGlyphs ( )

inline

References mvGraphicalObjects.

getListOfGeneralGlyphs() [2/2]

const CDataVector<CLGeneralGlyph>& CLayout::getListOfGeneralGlyphs ( ) const

inline

References mvGraphicalObjects.

Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CCopasiSpringLayout::createVariables(), CCopasiSpringLayout::finalizeState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), moveBy(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().

getListOfLocalRenderInformationObjects() [1/2]

CDataVector<CLLocalRenderInformation>& CLayout::getListOfLocalRenderInformationObjects ( )

inline

Returns a reference to the list of local render information objects.

References mvLocalRenderInformationObjects.

getListOfLocalRenderInformationObjects() [2/2]

const CDataVector<CLLocalRenderInformation>& CLayout::getListOfLocalRenderInformationObjects ( ) const

inline

Returns a const reference to the list of local render information objects.

References mvLocalRenderInformationObjects.

Referenced by CLLayoutRenderer::change_style(), SBMLDocumentLoader::createLayout(), CXMLParserData::createRenderInformation(), and CCopasiXML::saveLayoutList().

getListOfMetaboliteGlyphs() [1/2]

CDataVector<CLMetabGlyph>& CLayout::getListOfMetaboliteGlyphs ( )

inline

References mvMetabs.

getListOfMetaboliteGlyphs() [2/2]

const CDataVector<CLMetabGlyph>& CLayout::getListOfMetaboliteGlyphs ( ) const

inline

References mvMetabs.

Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CCopasiSpringLayout::createLayout(), CCopasiSpringLayout::createVariables(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().

getListOfReactionGlyphs() [1/2]

CDataVector<CLReactionGlyph>& CLayout::getListOfReactionGlyphs ( )

inline

References mvReactions.

getListOfReactionGlyphs() [2/2]

const CDataVector<CLReactionGlyph>& CLayout::getListOfReactionGlyphs ( ) const

inline

References mvReactions.

Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CCopasiSpringLayout::createVariables(), CCopasiSpringLayout::finalizeState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CLLayoutRenderer::setDeduceSpeciesReferenceRoles(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().

getListOfTextGlyphs() [1/2]

CDataVector<CLTextGlyph>& CLayout::getListOfTextGlyphs ( )

inline

References mvLabels.

getListOfTextGlyphs() [2/2]

const CDataVector<CLTextGlyph>& CLayout::getListOfTextGlyphs ( ) const

inline

References mvLabels.

Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::initFromLayout(), moveBy(), placeTextGlyphs(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().

getRenderInformation() [1/2]

CLLocalRenderInformation * CLayout::getRenderInformation

(

size_t

index

)

Returns a pointer to the local render information with the given index or NULL if the index is invalid.

References mvLocalRenderInformationObjects, and CDataVector< CType >::size().

getRenderInformation() [2/2]

const CLLocalRenderInformation * CLayout::getRenderInformation

(

size_t

index

)

const

Returns a const pointer to the local render information with the given index or NULL if the index is invalid.

References mvLocalRenderInformationObjects, and CDataVector< CType >::size().

moveBy()

void CLayout::moveBy ( const CLPoint &  p )

virtual

Reimplemented from CLBase.

References getListOfCompartmentGlyphs(), getListOfGeneralGlyphs(), getListOfMetaboliteGlyphs(), getListOfReactionGlyphs(), getListOfTextGlyphs(), CLPoint::isEmpty(), CLGraphicalObject::moveBy(), and CDataVector< CType >::size().

Referenced by calculateAndAssignBounds().

print()

void CLayout::print ( std::ostream *  ostream ) const

virtual

This is the output method for any object. The default implementation provided with CDataObject uses the ostream operator<< of the object to print the object.To override this default behavior one needs to reimplement the virtual print function.

Parameters

std::ostream

* ostream

Reimplemented from CDataObject.

scale()

virtual void CLayout::scale ( const double &  scaleFactor )

inlinevirtual

References CLDimensions::scale().

setDimensions()

void CLayout::setDimensions ( const CLDimensions &  d )

inline

References mDimensions.

Referenced by calculateAndAssignBounds(), CCopasiSpringLayout::createLayout(), and LayoutHandler::processEnd().

toData()

CData CLayout::toData ( ) const

virtual

Retrieve the data describing the object

Returns

CData data

Reimplemented from CDataContainer.

References fatalError.

writeDotEdge()

void CLayout::writeDotEdge ( std::ostream &  os, const std::string &  id1, const std::string &  id2, int  t = 0  ) const

protected

Referenced by exportToDotFile().

writeDotNode()

void CLayout::writeDotNode ( std::ostream &  os, const std::string &  id, const std::string &  label, int  t = 0  ) const

protected

Referenced by exportToDotFile().

Friends And Related Function Documentation

operator<<

std::ostream& operator<< ( std::ostream &  os, const CLayout &  g  )

friend

insert operator

Member Data Documentation

mDimensions

CLDimensions CLayout::mDimensions

protected

Referenced by exportToSBML(), getDimensions(), and setDimensions().

mKey

std::string CLayout::mKey

protected

Referenced by CLayout(), getKey(), and ~CLayout().

mvCompartments

CDataVector<CLCompartmentGlyph> CLayout::mvCompartments

protected

Referenced by addCompartmentGlyph(), CLayout(), exportToSBML(), and getListOfCompartmentGlyphs().

mvGraphicalObjects

CDataVector<CLGeneralGlyph> CLayout::mvGraphicalObjects

protected

Referenced by addGeneralGlyph(), CLayout(), exportToSBML(), and getListOfGeneralGlyphs().

mvLabels

CDataVector<CLTextGlyph> CLayout::mvLabels

protected

Referenced by addTextGlyph(), CLayout(), exportToSBML(), and getListOfTextGlyphs().

mvLocalRenderInformationObjects

CDataVector<CLLocalRenderInformation> CLayout::mvLocalRenderInformationObjects

protected

Referenced by addLocalRenderInformation(), exportToSBML(), getListOfLocalRenderInformationObjects(), and getRenderInformation().

mvMetabs

CDataVector<CLMetabGlyph> CLayout::mvMetabs

protected

Referenced by addMetaboliteGlyph(), CLayout(), exportToDotFile(), exportToSBML(), and getListOfMetaboliteGlyphs().

mvReactions

CDataVector<CLReactionGlyph> CLayout::mvReactions

protected

Referenced by addReactionGlyph(), CLayout(), exportToDotFile(), exportToSBML(), and getListOfReactionGlyphs().

---

The documentation for this class was generated from the following files:

• CLayout.h
• CLayout.cpp