COPASI API
4.40.278
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#include <CLReactionGlyph.h>
Public Member Functions | |
CLGlyphWithCurve (const CLGlyphWithCurve &src, const CDataContainer *pParent) | |
CLGlyphWithCurve (const GraphicalObject &sbml, const std::map< std::string, std::string > &modelmap, std::map< std::string, std::string > &layoutmap, const CDataContainer *pParent=NO_PARENT) | |
CLGlyphWithCurve (const std::string &name="ReferenceGlyph", const CDataContainer *pParent=NO_PARENT) | |
CLCurve & | getCurve () |
const CLCurve & | getCurve () const |
virtual void | moveBy (const CLPoint &p) |
CLGlyphWithCurve & | operator= (const CLGlyphWithCurve &rhs) |
void | print (std::ostream *ostream) const |
void | setCurve (const CLCurve &c) |
Public Member Functions inherited from CLGraphicalObject | |
virtual bool | applyData (const CData &data, CUndoData::CChangeSet &changes) |
CLGraphicalObject (const CLGraphicalObject &src, const CDataContainer *pParent) | |
CLGraphicalObject (const GraphicalObject &sbml, std::map< std::string, std::string > &layoutmap, const CDataContainer *pParent=NO_PARENT) | |
CLGraphicalObject (const std::string &name="GraphicalObject", const CDataContainer *pParent=NO_PARENT) | |
virtual CLGraphicalObject * | clone () const |
virtual void | exportToSBML (GraphicalObject *sbmlobject, const std::map< const CDataObject *, SBase * > &copasimodelmap, std::map< std::string, const SBase * > &sbmlIDs) const |
CLBoundingBox & | getBoundingBox () |
const CLBoundingBox & | getBoundingBox () const |
const CLDimensions & | getDimensions () const |
const C_FLOAT64 & | getHeight () const |
virtual const std::string & | getKey () const |
CDataObject * | getModelObject () const |
std::string | getModelObjectDisplayName (bool regular=true, bool richtext=false) const |
const std::string & | getModelObjectKey () const |
std::string | getModelObjectName () const |
const std::string & | getObjectRole () const |
const CLPoint & | getPosition () const |
const C_FLOAT64 & | getWidth () const |
const C_FLOAT64 & | getX () const |
const C_FLOAT64 & | getY () const |
bool | hasValidModelReference () const |
CLGraphicalObject & | operator= (const CLGraphicalObject &rhs) |
void | setBoundingBox (const CLBoundingBox &bb) |
void | setDimensions (const CLDimensions &d) |
void | setHeight (const C_FLOAT64 &h) |
void | setModelObjectKey (const std::string &k) |
void | setObjectRole (const std::string &role) |
void | setPosition (const CLPoint &p) |
void | setWidth (const C_FLOAT64 &w) |
void | setX (const C_FLOAT64 &x) |
void | setY (const C_FLOAT64 &y) |
virtual CData | toData () const |
~CLGraphicalObject () | |
Public Member Functions inherited from CLBase | |
CLBase () | |
CLBase (const CLBase &b) | |
CLBase (const SBase &) | |
const std::string & | getTag () const |
bool | hasTag () const |
void | setTag (const std::string &tag) |
virtual | ~CLBase () |
Public Member Functions inherited from CDataContainer | |
virtual bool | add (CDataObject *pObject, const bool &adopt=true) |
virtual bool | appendDeletedDependentData (CUndoData &undoData) const |
CDataContainer (const CDataContainer &src, const CDataContainer *pParent) | |
CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
virtual void | createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override |
virtual std::string | getChildObjectUnits (const CDataObject *pObject) const |
void | getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const |
virtual size_t | getIndex (const CDataObject *pObject) const |
virtual const CObjectInterface * | getObject (const CCommonName &cn) const override |
virtual objectMap & | getObjects () |
virtual const objectMap & | getObjects () const |
virtual const std::string | getUnits () const override |
virtual const CDataObject * | getValueObject () const override |
virtual CUndoObjectInterface * | insert (const CData &data) override |
void | objectRenamed (CDataObject *pObject, const std::string &oldName) |
virtual bool | remove (CDataObject *pObject) |
virtual | ~CDataContainer () |
Public Member Functions inherited from CDataObject | |
void | addIssue (const CIssue &issue) |
void | addReference (const CDataContainer *pReference) |
virtual void | calculateValue () override |
CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL) | |
virtual void | destruct () override |
virtual CCommonName | getCN () const override |
virtual const CDataObject * | getDataObject () const override |
CDataContainer * | getObjectAncestor (const std::string &type) const |
CDataModel * | getObjectDataModel () const |
virtual std::string | getObjectDisplayName () const override |
const CObjectInterface * | getObjectFromCN (const CCommonName &cn) const |
const std::string & | getObjectName () const |
CDataContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const override |
virtual const CValidity & | getValidity () const override |
virtual void * | getValuePointer () const override |
bool | hasFlag (const Flag &flag) const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override |
bool | prerequisitsContains (const DataObjectSet &objects) const |
void | removeIssue (const CIssue &issue) |
void | removeReference (const CDataContainer *pReference) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CDataContainer *pParent) |
void | validityChanged (const CValidity &changedValidity) override |
void | validityRemoved (const CValidity &changedValidity) |
virtual | ~CDataObject () |
Public Member Functions inherited from CObjectInterface | |
CObjectInterface () | |
CObjectInterface (const CObjectInterface &src) | |
virtual | ~CObjectInterface () |
Public Member Functions inherited from CUndoObjectInterface | |
CUndoObjectInterface () | |
CUndoObjectInterface (const CUndoObjectInterface &src) | |
bool | generateUuid () |
const xg::Guid & | getUuid () const |
bool | setUuid (const std::string &uuid) |
bool | setUuid (const xg::Guid &uuid) |
virtual void | updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject) |
virtual | ~CUndoObjectInterface () |
Protected Member Functions | |
CLGlyphWithCurve (const CLGlyphWithCurve &src) | |
Protected Member Functions inherited from CLGraphicalObject | |
CLGraphicalObject (const CLGraphicalObject &src) | |
Protected Member Functions inherited from CDataContainer | |
template<class CType > | |
CDataMatrixReference< CType > * | addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataObjectReference< CType > * | addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataVectorReference< CType > * | addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
CDataContainer (const CDataContainer &src) | |
void | initObjects () |
Protected Member Functions inherited from CDataObject | |
CDataObject () | |
CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
Protected Attributes | |
CLCurve | mCurve |
Protected Attributes inherited from CLGraphicalObject | |
CLBoundingBox | mBBox |
std::string | mKey |
std::string | mModelObjectKey |
std::string | mObjectRole |
Protected Attributes inherited from CLBase | |
std::string | mTag |
Protected Attributes inherited from CDataContainer | |
objectMap | mObjects |
Protected Attributes inherited from CDataObject | |
ObjectSet | mPrerequisits |
std::set< CDataContainer * > | mReferences |
Protected Attributes inherited from CObjectInterface | |
CValidity | mValidity |
Friends | |
std::ostream & | operator<< (std::ostream &os, const CLGlyphWithCurve &g) |
Additional Inherited Members | |
Public Types inherited from CDataContainer | |
typedef CDataObjectMap | objectMap |
Public Types inherited from CDataObject | |
typedef std::set< const CDataObject * > | DataObjectSet |
enum | Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE } |
Public Types inherited from CObjectInterface | |
typedef std::vector< const CDataContainer * > | ContainerList |
typedef std::set< const CObjectInterface * > | ObjectSet |
Static Public Member Functions inherited from CLGraphicalObject | |
static CLGraphicalObject * | fromData (const CData &data, CUndoObjectInterface *pParent) |
Static Public Member Functions inherited from CDataContainer | |
static CDataContainer * | fromData (const CData &data, CUndoObjectInterface *pParent) |
Static Public Member Functions inherited from CDataObject | |
static CDataObject * | fromData (const CData &data, CUndoObjectInterface *pParent) |
static void | sanitizeObjectName (std::string &name) |
Static Public Member Functions inherited from CObjectInterface | |
static const CDataObject * | DataObject (const CObjectInterface *pInterface) |
static CObjectInterface * | GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName) |
Static Public Member Functions inherited from CUndoObjectInterface | |
template<class CType > | |
static CType * | fromData (const CData &, CUndoObjectInterface *) |
Static Public Attributes inherited from CDataContainer | |
static const CObjectInterface::ContainerList | EmptyList |
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protected |
CLGlyphWithCurve::CLGlyphWithCurve | ( | const std::string & | name = "ReferenceGlyph" , |
const CDataContainer * | pParent = NO_PARENT |
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CLGlyphWithCurve::CLGlyphWithCurve | ( | const CLGlyphWithCurve & | src, |
const CDataContainer * | pParent | ||
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CLGlyphWithCurve::CLGlyphWithCurve | ( | const GraphicalObject & | sbml, |
const std::map< std::string, std::string > & | modelmap, | ||
std::map< std::string, std::string > & | layoutmap, | ||
const CDataContainer * | pParent = NO_PARENT |
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constructor from libsbml object
References mCurve.
const CLCurve & CLGlyphWithCurve::getCurve | ( | ) | const |
References mCurve.
Referenced by CCopasiSpringLayout::addReactionVariables(), CLayout::calculateBoundingBox(), CLLayoutRenderer::draw_layout(), CCopasiSpringLayout::finalizeState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CLLayoutRenderer::move_reaction_glyph(), CLLayoutRenderer::move_selection(), CLLayoutRenderer::move_species_reference_glyph(), compareGraphicalObjectsBySize::operator()(), CCopasiXML::saveLayoutList(), CLLayoutRenderer::update_associations(), and CLLayoutRenderer::update_textures_and_colors().
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Reimplemented from CLGraphicalObject.
Reimplemented in CLReactionGlyph, and CLGeneralGlyph.
References mCurve, CLCurve::moveBy(), and CLGraphicalObject::moveBy().
Referenced by CLGeneralGlyph::moveBy(), and CLReactionGlyph::moveBy().
CLGlyphWithCurve & CLGlyphWithCurve::operator= | ( | const CLGlyphWithCurve & | rhs | ) |
assignment operator.
References mCurve, and CLGraphicalObject::operator=().
Referenced by CLGeneralGlyph::operator=(), CLMetabReferenceGlyph::operator=(), CLReactionGlyph::operator=(), and CLReferenceGlyph::operator=().
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This is the output method for any object. The default implementation provided with CDataObject uses the ostream operator<< of the object to print the object.To override this default behavior one needs to reimplement the virtual print function.
std::ostream | * ostream |
Reimplemented from CLGraphicalObject.
Reimplemented in CLReactionGlyph, CLGeneralGlyph, CLMetabReferenceGlyph, and CLReferenceGlyph.
void CLGlyphWithCurve::setCurve | ( | const CLCurve & | c | ) |
References mCurve.
Referenced by MetaboliteReferenceGlyphHandler::processEnd(), and ReactionGlyphHandler::processEnd().
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insert operator
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Referenced by CLGlyphWithCurve(), CLMetabReferenceGlyph::CLMetabReferenceGlyph(), CLReactionGlyph::CLReactionGlyph(), CLGeneralGlyph::exportToSBML(), CLReactionGlyph::exportToSBML(), CLReferenceGlyph::exportToSBML(), CLMetabReferenceGlyph::exportToSBML(), getCurve(), moveBy(), operator=(), and setCurve().