COPASI API
4.40.278
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#include <CUnitDefinition.h>
Public Member Functions | |
virtual bool | applyData (const CData &data, CUndoData::CChangeSet &changes) |
virtual void | createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const |
CUnitDefinition (const CUnitDefinition &src, const CDataContainer *pParent=NO_PARENT) | |
CUnitDefinition (const std::string &name="NoName", const CDataContainer *pParent=NO_PARENT) | |
virtual const std::string & | getKey () const |
const std::string & | getSymbol () const |
bool | isReadOnly () const |
CUnitDefinition & | operator= (const CUnitDefinition &src) |
virtual CIssue | setExpression (const std::string &expression) |
bool | setSymbol (const std::string &symbol) |
virtual CData | toData () const |
~CUnitDefinition () | |
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virtual bool | add (CDataObject *pObject, const bool &adopt=true) |
virtual bool | appendDeletedDependentData (CUndoData &undoData) const |
CDataContainer (const CDataContainer &src, const CDataContainer *pParent) | |
CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
virtual std::string | getChildObjectUnits (const CDataObject *pObject) const |
void | getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const |
virtual size_t | getIndex (const CDataObject *pObject) const |
virtual const CObjectInterface * | getObject (const CCommonName &cn) const override |
virtual objectMap & | getObjects () |
virtual const objectMap & | getObjects () const |
virtual const std::string | getUnits () const override |
virtual const CDataObject * | getValueObject () const override |
virtual CUndoObjectInterface * | insert (const CData &data) override |
void | objectRenamed (CDataObject *pObject, const std::string &oldName) |
virtual bool | remove (CDataObject *pObject) |
virtual | ~CDataContainer () |
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void | addIssue (const CIssue &issue) |
void | addReference (const CDataContainer *pReference) |
virtual void | calculateValue () override |
CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL) | |
virtual void | destruct () override |
virtual CCommonName | getCN () const override |
virtual const CDataObject * | getDataObject () const override |
CDataContainer * | getObjectAncestor (const std::string &type) const |
CDataModel * | getObjectDataModel () const |
virtual std::string | getObjectDisplayName () const override |
const CObjectInterface * | getObjectFromCN (const CCommonName &cn) const |
const std::string & | getObjectName () const |
CDataContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const override |
virtual const CValidity & | getValidity () const override |
virtual void * | getValuePointer () const override |
bool | hasFlag (const Flag &flag) const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override |
bool | prerequisitsContains (const DataObjectSet &objects) const |
virtual void | print (std::ostream *ostream) const override |
void | removeIssue (const CIssue &issue) |
void | removeReference (const CDataContainer *pReference) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CDataContainer *pParent) |
void | validityChanged (const CValidity &changedValidity) override |
void | validityRemoved (const CValidity &changedValidity) |
virtual | ~CDataObject () |
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CObjectInterface () | |
CObjectInterface (const CObjectInterface &src) | |
virtual | ~CObjectInterface () |
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CUndoObjectInterface () | |
CUndoObjectInterface (const CUndoObjectInterface &src) | |
bool | generateUuid () |
const xg::Guid & | getUuid () const |
bool | setUuid (const std::string &uuid) |
bool | setUuid (const xg::Guid &uuid) |
virtual void | updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject) |
virtual | ~CUndoObjectInterface () |
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void | addComponent (const CUnitComponent &component) |
void | buildExpression () |
CIssue | compile () |
CUnit () | |
CUnit (const CBaseUnit::Kind &kind) | |
CUnit (const CUnit &src) | |
CUnit (const std::string &expression) | |
CUnit | exponentiate (double exp) const |
void | filterUsedSymbols (const CUnitDefinitionDB &unitDefinitiionDB) |
const std::set< CUnitComponent > & | getComponents () const |
std::string | getExpression () const |
std::vector< SymbolComponent > | getSymbolComponents () const |
const std::set< std::string > & | getUsedSymbols () const |
bool | isDimensionless () const |
bool | isEquivalent (const CUnit &rightSide) const |
bool | isUndefined () const |
bool | isUnitType (UnitType type) const |
bool | isValid () const |
CUnit | operator* (const CUnit &rightSide) const |
bool | operator< (const CUnit &rightSide) const |
CUnit & | operator= (const CUnit &rightSide) |
bool | operator== (const CUnit &rightSide) const |
void | replaceSymbol (const std::string &oldSymbol, const std::string &newSymbol) |
void | setDimensionLess (double multiplier, double scale, double exponent) |
virtual | ~CUnit () |
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bool | addUnsupportedAnnotation (const std::string &name, const std::string &xml) |
bool | applyData (const CData &data, CUndoData::CChangeSet &changes) |
CAnnotation () | |
CAnnotation (const CAnnotation &src) | |
void | createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const |
const std::string & | getMiriamAnnotation () const |
const std::string & | getNotes () const |
UnsupportedAnnotation & | getUnsupportedAnnotations () |
const UnsupportedAnnotation & | getUnsupportedAnnotations () const |
void | initMiriamAnnotation (const std::string &newId) |
bool | operator== (const CAnnotation &rhs) const |
bool | removeUnsupportedAnnotation (const std::string &name) |
bool | replaceUnsupportedAnnotation (const std::string &name, const std::string &xml) |
void | setMiriamAnnotation (const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) |
void | setNotes (const std::string ¬es) |
CData | toData () const |
virtual | ~CAnnotation () |
Static Public Member Functions | |
static CUnitDefinition * | fromData (const CData &data, CUndoObjectInterface *pParent) |
static CUnit | getSIUnit (const std::string &symbol) |
static bool | isBuiltinUnitSymbol (std::string symbol) |
static void | updateSIUnitDefinitions (CUnitDefinitionDB *Units) |
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static CDataContainer * | fromData (const CData &data, CUndoObjectInterface *pParent) |
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static CDataObject * | fromData (const CData &data, CUndoObjectInterface *pParent) |
static void | sanitizeObjectName (std::string &name) |
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static const CDataObject * | DataObject (const CObjectInterface *pInterface) |
static CObjectInterface * | GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName) |
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template<class CType > | |
static CType * | fromData (const CData &, CUndoObjectInterface *) |
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static std::string | prettyPrint (const std::string &expression) |
static std::string | replaceSymbol (const std::string &expression, const std::string &oldSymbol, const std::string &newSymbol) |
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static CMIRIAMInfo * | allocateMiriamInfo (CDataContainer *pParent) |
static CAnnotation * | castObject (CDataObject *pObject) |
static const CAnnotation * | castObject (const CDataObject *pObject) |
static void | freeMiriamInfo (CDataContainer *pParent) |
Private Member Functions | |
void | setup () |
Private Attributes | |
bool | mReadOnly |
std::string | mSymbol |
Friends | |
std::ostream & | operator<< (std::ostream &os, const CUnitDefinition &o) |
Additional Inherited Members | |
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typedef CDataObjectMap | objectMap |
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typedef std::set< const CDataObject * > | DataObjectSet |
enum | Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE } |
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typedef std::vector< const CDataContainer * > | ContainerList |
typedef std::set< const CObjectInterface * > | ObjectSet |
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enum | UnitType { time = 0 , quantity , volume , area , length } |
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typedef std::map< std::string, std::string > | UnsupportedAnnotation |
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static const CObjectInterface::ContainerList | EmptyList |
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static C_FLOAT64 | Avogadro |
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template<class CType > | |
CDataMatrixReference< CType > * | addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataObjectReference< CType > * | addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
template<class CType > | |
CDataVectorReference< CType > * | addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None) |
CDataContainer (const CDataContainer &src) | |
void | initObjects () |
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CDataObject () | |
CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
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objectMap | mObjects |
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ObjectSet | mPrerequisits |
std::set< CDataContainer * > | mReferences |
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CValidity | mValidity |
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std::string | mKey |
CUnitDefinition::CUnitDefinition | ( | const std::string & | name = "NoName" , |
const CDataContainer * | pParent = NO_PARENT |
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Default constructor
const | std::string & name (default: "NoName") |
const | CDataContainer * pParent (default: NULL) |
References CKeyFactory::add(), CRootContainer::getKeyFactory(), CAnnotation::initMiriamAnnotation(), CAnnotation::mKey, and setup().
Referenced by fromData(), and updateSIUnitDefinitions().
CUnitDefinition::CUnitDefinition | ( | const CUnitDefinition & | src, |
const CDataContainer * | pParent = NO_PARENT |
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Copy constructor
const | CUnitDefinition::& src |
const | CDataContainer * pParent |
References CKeyFactory::add(), CRootContainer::getKeyFactory(), CAnnotation::getMiriamAnnotation(), CAnnotation::mKey, CAnnotation::setMiriamAnnotation(), and setup().
CUnitDefinition::~CUnitDefinition | ( | ) |
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Apply the provided data to the object
const | CData & data |
Reimplemented from CDataContainer.
References CAnnotation::applyData(), CDataContainer::applyData(), CData::getProperty(), CData::isSetProperty(), mSymbol, setExpression(), CDataValue::toString(), CData::UNIT_EXPRESSION, and CData::UNIT_SYMBOL.
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Create the undo data which represents the changes recording the differences between the provided oldData and the current data.
CUndoData | & undoData |
const | CUndoData::Type & type |
const | CData & oldData (default: empty data) |
const | CCore::Framework & framework (default: CCore::Framework::ParticleNumbers) |
Reimplemented from CDataContainer.
References CUndoData::addProperty(), CUndoData::CHANGE, CAnnotation::createUndoData(), CDataContainer::createUndoData(), CUnit::getExpression(), CData::getProperty(), mSymbol, CData::UNIT_EXPRESSION, and CData::UNIT_SYMBOL.
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Static method to create a CDataObject based on the provided data
const | CData & data |
References CUnitDefinition(), CData::getProperty(), NO_PARENT, CData::OBJECT_NAME, and CDataValue::toString().
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Retrieve the key
Reimplemented from CAnnotation.
References CAnnotation::getKey().
Referenced by UnitDefinitionHandler::processEnd(), and CCopasiXML::saveUnitDefinitionList().
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References CUnit::CUnit(), SIUnit::expression, SIUnit::name, CUnit::setExpression(), SIUnits, and SIUnit::symbol.
const std::string & CUnitDefinition::getSymbol | ( | ) | const |
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References SIUnits, and SIUnit::symbol.
bool CUnitDefinition::isReadOnly | ( | ) | const |
References mReadOnly.
Referenced by CCopasiXML::saveUnitDefinitionList().
CUnitDefinition & CUnitDefinition::operator= | ( | const CUnitDefinition & | src | ) |
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Reimplemented from CUnit.
References CValidity::add(), CFlags< Enum >::All, CIssue::Error, CUnit::getExpression(), CUnit::isUndefined(), CObjectInterface::mValidity, CValidity::remove(), CUnit::setExpression(), CIssue::UnitConflict, CIssue::UnitInvalid, CIssue::UnitUndefined, and CIssue::Warning.
Referenced by applyData(), CCopasiXML::mergeUnitDefinitions(), UnitDefinitionHandler::processEnd(), and updateSIUnitDefinitions().
bool CUnitDefinition::setSymbol | ( | const std::string & | symbol | ) |
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References CDataContainer::add(), CKeyFactory::add(), CRootContainer::getKeyFactory(), CDataObject::getObjectParent(), CAnnotation::mKey, mSymbol, and setSymbol().
Referenced by CUnitDefinition().
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Retrieve the data describing the object
Reimplemented from CDataContainer.
References CData::addProperty(), CData::appendData(), CUnit::getExpression(), mSymbol, CAnnotation::toData(), CDataContainer::toData(), CData::UNIT_EXPRESSION, and CData::UNIT_SYMBOL.
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References C_INVALID_INDEX, CUnitDefinition(), SIUnit::expression, CDataVectorN< CType >::getIndex(), mReadOnly, SIUnit::name, setExpression(), setSymbol(), SIUnits, and SIUnit::symbol.
Referenced by CRootContainer::initializeChildren().
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Referenced by isReadOnly(), and updateSIUnitDefinitions().
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Referenced by applyData(), createUndoData(), getSymbol(), operator=(), setSymbol(), setup(), and toData().