#include <CModelParameterSet.h>

Inheritance diagram for CModelParameterSet:

Public Member Functions
virtual void	add (CModelParameter *pModelParameter)

virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

void	assignSetContent (const CModelParameterSet &src, const bool &createMissing)

const_iterator	begin () const

	CModelParameterSet (const CModelParameterSet &src, const CDataContainer *pParent, const bool &createMissing=false)

	CModelParameterSet (const std::string &name, const CDataContainer *pParent=NO_PARENT)

bool	compareWithModel (const CCore::Framework &framework)

virtual void	compile ()

void	createFromModel ()

virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const

virtual void	destruct ()

const CompareResult &	diff (const CModelParameterSet &other, const CCore::Framework &framework, const bool &createMissing=false)

const_iterator	end () const

virtual CCommonName	getCN () const

virtual size_t	getIndex () const

virtual const std::string &	getKey () const

CModel *	getModel () const

const CModelParameter *	getModelParameter (const std::string &cn) const

virtual std::string	getName () const

virtual CUndoObjectInterface *	insert (const CData &data)

bool	isActive () const

virtual bool	refreshFromModel (const bool &modifyExistence)

bool	saveToStream (std::ostream &os, const CCore::Framework &framework, const std::string &mode, const std::string &separator)

void	setModel (const CModel *pModel)

virtual bool	setObjectParent (const CDataContainer *pParent)

virtual CData	toData () const

CModelParameterGroup *	toGroup ()

const CModelParameterGroup *	toGroup () const

virtual CModelParameterSet *	toSet ()

virtual const CModelParameterSet *	toSet () const

virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)

virtual bool	updateModel ()

virtual	~CModelParameterSet ()

Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)

virtual bool	appendDeletedDependentData (CUndoData &undoData) const

	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)

	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

virtual std::string	getChildObjectUnits (const CDataObject *pObject) const

void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const

virtual size_t	getIndex (const CDataObject *pObject) const

virtual const CObjectInterface *	getObject (const CCommonName &cn) const override

virtual objectMap &	getObjects ()

virtual const objectMap &	getObjects () const

virtual const std::string	getUnits () const override

virtual const CDataObject *	getValueObject () const override

void	objectRenamed (CDataObject *pObject, const std::string &oldName)

virtual bool	remove (CDataObject *pObject)

virtual	~CDataContainer ()

Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)

void	addReference (const CDataContainer *pReference)

virtual void	calculateValue () override

	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)

virtual const CDataObject *	getDataObject () const override

CDataContainer *	getObjectAncestor (const std::string &type) const

CDataModel *	getObjectDataModel () const

virtual std::string	getObjectDisplayName () const override

const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const

const std::string &	getObjectName () const

CDataContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override

virtual const CValidity &	getValidity () const override

virtual void *	getValuePointer () const override

bool	hasFlag (const Flag &flag) const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override

bool	prerequisitsContains (const DataObjectSet &objects) const

virtual void	print (std::ostream *ostream) const override

void	removeIssue (const CIssue &issue)

void	removeReference (const CDataContainer *pReference)

bool	setObjectName (const std::string &name)

void	validityChanged (const CValidity &changedValidity) override

void	validityRemoved (const CValidity &changedValidity)

virtual	~CDataObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

	CObjectInterface (const CObjectInterface &src)

virtual	~CObjectInterface ()

Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()

	CUndoObjectInterface (const CUndoObjectInterface &src)

bool	generateUuid ()

const xg::Guid &	getUuid () const

bool	setUuid (const std::string &uuid)

bool	setUuid (const xg::Guid &uuid)

virtual	~CUndoObjectInterface ()

Public Member Functions inherited from CModelParameterGroup
CModelParameter *	add (const CModelParameter::Type &type)

void	assignGroupContent (const CModelParameterGroup &src, const bool &createMissing)

iterator	begin ()

const_iterator	begin () const

void	clear ()

	CModelParameterGroup (CModelParameterGroup *pParent, const CModelParameter::Type &type=CModelParameter::Type::Group)

	CModelParameterGroup (const CModelParameterGroup &src, CModelParameterGroup *pParent, const bool &createMissing)

virtual const CompareResult &	diff (const CModelParameter &other, const CCore::Framework &framework, const bool &createMissing=false)

iterator	end ()

const_iterator	end () const

virtual const CModelParameter *	getChild (const size_t &index) const

CModelParameter *	getModelParameter (const std::string &cn) const

CModelParameter *	getModelParameter (const std::string &name, const CModelParameter::Type &type) const

virtual size_t	getNumChildren () const

const CValidatedUnit &	getObjectUnit (const CModelParameter *pModelParameter) const

void	remove (CModelParameter *pModelParameter)

void	remove (const size_t &index)

size_t	size () const

virtual	~CModelParameterGroup ()

Public Member Functions inherited from CModelParameter
	CModelParameter (CModelParameterGroup *pParent, const CModelParameter::Type &type)

	CModelParameter (const CModelParameter &src, CModelParameterGroup *pParent)

const CCommonName &	getCN () const

const CompareResult &	getCompareResult () const

std::string	getInitialExpression () const

const CExpression *	getInitialExpressionPtr () const

CModel *	getModel () const

CDataObject *	getObject () const

CModelParameterGroup *	getParent () const

CModelParameterSet *	getSet () const

const CModelEntity::Status &	getSimulationType () const

const Type &	getType () const

CValidatedUnit	getUnit (const CCore::Framework &framework) const

virtual const double &	getValue (const CCore::Framework &framework) const

bool	isInitialExpressionValid () const

bool	isReadOnly () const

bool	operator< (const CModelParameter &rhs) const

virtual void	setCN (const CCommonName &cn)

void	setCompareResult (const CompareResult &compareResult)

void	setInitialExpression (const std::string &initialExpression)

void	setParent (CModelParameterGroup *pParent)

bool	setSimulationType (const CModelEntity::Status &simulationType)

virtual void	setValue (const C_FLOAT64 &value, const CCore::Framework &framework, bool updateModelIfActive=true)

virtual	~CModelParameter ()

Public Member Functions inherited from CAnnotation
bool	addUnsupportedAnnotation (const std::string &name, const std::string &xml)

bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

	CAnnotation ()

	CAnnotation (const CAnnotation &src)

void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const

const std::string &	getMiriamAnnotation () const

const std::string &	getNotes () const

UnsupportedAnnotation &	getUnsupportedAnnotations ()

const UnsupportedAnnotation &	getUnsupportedAnnotations () const

void	initMiriamAnnotation (const std::string &newId)

bool	operator== (const CAnnotation &rhs) const

bool	removeUnsupportedAnnotation (const std::string &name)

bool	replaceUnsupportedAnnotation (const std::string &name, const std::string &xml)

void	setMiriamAnnotation (const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)

void	setNotes (const std::string &notes)

CData	toData () const

virtual	~CAnnotation ()

Static Public Member Functions
static CModelParameterSet *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)

static void	sanitizeObjectName (std::string &name)

Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)

static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)

Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Static Public Member Functions inherited from CModelParameter
static CModelParameter *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CAnnotation
static CMIRIAMInfo *	allocateMiriamInfo (CDataContainer *pParent)

static CAnnotation *	castObject (CDataObject *pObject)

static const CAnnotation *	castObject (const CDataObject *pObject)

static void	freeMiriamInfo (CDataContainer *pParent)

Private Member Functions
void	init ()

Private Attributes
std::string	mKey

CModelParameterGroup *	mpCompartments

CModel *	mpModel

CModelParameterGroup *	mpModelValues

CModelParameterGroup *	mpReactions

CModelParameterGroup *	mpSpecies

CModelParameterGroup *	mpTimes

Additional Inherited Members
Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap

Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet

enum	Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE }

Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList

typedef std::set< const CObjectInterface * >	ObjectSet

Public Types inherited from CModelParameterGroup
typedef std::vector< CModelParameter * >::const_iterator	const_iterator

typedef std::vector< CModelParameter * >::iterator	iterator

Public Types inherited from CModelParameter
enum class	CompareResult { Obsolete , Missing , Modified , Conflict , Identical , __SIZE }

enum class	Type { Model , Compartment , Species , ModelValue , ReactionParameter , Reaction , Group , Set , unknown , __SIZE }

Public Types inherited from CAnnotation
typedef std::map< std::string, std::string >	UnsupportedAnnotation

Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Static Public Attributes inherited from CModelParameter
static const CEnumAnnotation< std::string, CompareResult >	CompareResultNames

static const CEnumAnnotation< std::string, Type >	TypeNames

Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

	CDataContainer (const CDataContainer &src)

void	initObjects ()

Protected Member Functions inherited from CDataObject
	CDataObject ()

	CDataObject (const std::string &name, const CDataContainer pParent=static_cast< CDataContainer >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Member Functions inherited from CModelParameterGroup
CModelParameter *	copy (const CModelParameter &src, const bool &createMissing)

Protected Attributes inherited from CDataContainer
objectMap	mObjects

Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits

std::set< CDataContainer * >	mReferences

Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Protected Attributes inherited from CModelParameter
CRegisteredCommonName	mCN

CompareResult	mCompareResult

bool	mIsInitialExpressionValid

CExpression *	mpInitialExpression

CDataObject *	mpObject

CModelParameterGroup *	mpParent

CModelEntity::Status	mSimulationType

Type	mType

double	mValue

Protected Attributes inherited from CAnnotation
std::string	mKey

Constructor & Destructor Documentation

◆ CModelParameterSet() [1/2]

CModelParameterSet::CModelParameterSet	(	const std::string &	name,
		const CDataContainer *	pParent = `NO_PARENT`
	)

Constructor

Parameters

const	std::string & name
const	CDataContainer * pParent (default: NULL)

References CModelParameterGroup::add(), CDataObject::getCN(), CModelParameter::Group, CAnnotation::initMiriamAnnotation(), mKey, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, CModelParameter::setCN(), and setObjectParent().

Referenced by fromData().

◆ CModelParameterSet() [2/2]

CModelParameterSet::CModelParameterSet	(	const CModelParameterSet &	src,
		const CDataContainer *	pParent,
		const bool &	createMissing = `false`
	)

Copy constructor

Parameters

const	CModelParameterSet & src
const	CDataContainer * pParent
const	bool & createMissing (default: false)

References compile(), getCN(), CAnnotation::getMiriamAnnotation(), getModel(), CModelParameterGroup::getModelParameter(), mKey, mpCompartments, mpModel, mpModelValues, mpReactions, mpSpecies, mpTimes, CAnnotation::setMiriamAnnotation(), and setObjectParent().

◆ ~CModelParameterSet()

CModelParameterSet::~CModelParameterSet ( )

virtual

Destructor

References CRootContainer::getKeyFactory(), CModelParameter::Group, mKey, CModelParameter::mType, and CKeyFactory::remove().

Member Function Documentation

◆ add()

void CModelParameterSet::add ( CModelParameter * pModelParameter )

virtual

Add the given parameter to the group. Note, the parent of the parameter is not updated

Parameters

CModelParameter * pModelParameter

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::add(), CModelParameter::getCN(), getCN(), CDataObject::getCN(), CModelParameter::getType(), CModelParameter::Group, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, and pdelete.

◆ applyData()

bool CModelParameterSet::applyData	(	const CData &	data,
		CUndoData::CChangeSet &	changes
	)

virtual

Apply the provided data to the object

Parameters

const CData & data

Returns: bool success

Reimplemented from CDataContainer.

References CAnnotation::applyData(), CModelParameterGroup::applyData(), and CDataContainer::applyData().

◆ assignSetContent()

void CModelParameterSet::assignSetContent	(	const CModelParameterSet &	src,
		const bool &	createMissing
	)

Assign the content of the source set to this, i.e., copy all contained parameters and groups.

Parameters

const	CModelParameterSet & src
const	bool & createMissing

References CModelParameterGroup::assignGroupContent(), compile(), getCN(), getModelParameter(), mpCompartments, mpModelValues, mpReactions, mpSpecies, and mpTimes.

Referenced by ModelHandler::processEnd().

◆ begin()

CModelParameterGroup::const_iterator CModelParameterSet::begin ( ) const

Retrieve the const_iterator pointing to the first contained parameter.

Returns: const_iterator begin

References CModelParameterGroup::begin().

Referenced by CCopasiXML::saveModelParameterSets().

◆ compareWithModel()

bool CModelParameterSet::compareWithModel ( const CCore::Framework & framework )

Compare the parameter set with the assigned model

References createFromModel(), diff(), CModelParameter::Identical, and mpModel.

◆ compile()

void CModelParameterSet::compile ( )

virtual

Compile the parameter

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::compile().

Referenced by assignSetContent(), CModelParameterSet(), createFromModel(), and updateModel().

◆ createFromModel()

void CModelParameterSet::createFromModel ( )

Create the parameter set from the assigned model

References CModelParameterGroup::add(), CModelEntity::ASSIGNMENT, CDataVector< CType >::begin(), C_FLOAT64, CModelParameterGroup::clear(), CModelParameter::Compartment, compile(), CDataVector< CType >::end(), CModelEntity::FIXED, CDataObject::getCN(), CModel::getCompartments(), CModel::getInitialTime(), CModelEntity::getInitialValue(), CModelEntity::getInitialValueReference(), CModel::getMetabolites(), CModel::getModelValues(), CModel::getReactions(), CFunctionParameter::getUsage(), CModelParameter::Model, CModelParameter::ModelValue, mpCompartments, mpModel, mpModelValues, mpReactions, mpSpecies, mpTimes, CFunctionParameter::PARAMETER, CCore::ParticleNumbers, CModelParameter::Reaction, CModelParameter::ReactionParameter, CModelParameter::setCN(), CModelParameter::setInitialExpression(), CModelParameter::setSimulationType(), CModelParameter::setValue(), and CModelParameter::Species.

Referenced by CModel::applyActiveParameterSet(), compareWithModel(), CModel::compile(), and CFitProblem::createParameterSet().

◆ createUndoData()

void CModelParameterSet::createUndoData	(	CUndoData &	undoData,
		const CUndoData::Type &	type,
		const CData &	oldData = `CData()`,
		const CCore::Framework &	framework = `CCore::Framework::ParticleNumbers`
	)		const

virtual

Create the undo data which represents the changes recording the differences between the provided oldData and the current data.

Parameters

CUndoData	& undoData
const	CUndoData::Type & type
const	CData & oldData (default: empty data)
const	CCore::Framework & framework (default: CCore::Framework::ParticleNumbers)

Returns: CUndoData undoData

Reimplemented from CDataContainer.

References CAnnotation::createUndoData(), CModelParameterGroup::createUndoData(), and CDataContainer::createUndoData().

◆ destruct()

void CModelParameterSet::destruct ( )

virtual

Destruct the object

Reimplemented from CDataObject.

◆ diff()

const CModelParameter::CompareResult & CModelParameterSet::diff	(	const CModelParameterSet &	other,
		const CCore::Framework &	framework,
		const bool &	createMissing = `false`
	)

Compare the parameter to an other

Parameters

const	CModelParameterSet & other
const	CCore::Framework & framework
const	bool & createMissing = false

References CModelParameterGroup::diff().

Referenced by compareWithModel(), and CDataModel::loadModelParameterSets().

◆ end()

CModelParameterGroup::const_iterator CModelParameterSet::end ( ) const

Retrieve the const_iterator pointing past the last contained parameter.

Returns: const_iterator end

References CModelParameterGroup::end().

Referenced by CCopasiXML::saveModelParameterSets().

◆ fromData()

CModelParameterSet * CModelParameterSet::fromData	(	const CData &	data,
		CUndoObjectInterface *	pParent
	)

static

Static method to create a CDataObject based on the provided data

Parameters

const CData & data

Returns: CModelParameterSet * pDataObject

References CModelParameterSet(), CData::getProperty(), NO_PARENT, CData::OBJECT_NAME, and CDataValue::toString().

◆ getCN()

CCommonName CModelParameterSet::getCN ( ) const

virtual

Retrieve the CN of the object

Returns: CCommonName

Reimplemented from CDataObject.

References CDataObject::getCN().

Referenced by add(), assignSetContent(), and CModelParameterSet().

◆ getIndex()

size_t CModelParameterSet::getIndex ( ) const

virtual

Retrieve the index of the parameter in the vector of children in the parent

Returns: size_t index

Reimplemented from CModelParameter.

References C_INVALID_INDEX, CDataContainer::getIndex(), and CDataObject::getObjectParent().

◆ getKey()

const std::string & CModelParameterSet::getKey ( ) const

virtual

Retrieve the unique key of the set.

Returns: const std::string & key

Reimplemented from CAnnotation.

References mKey.

Referenced by CModel::applyActiveParameterSet(), isActive(), ModelParameterSetHandler::processEnd(), and CCopasiXML::saveModelParameterSets().

◆ getModel()

CModel * CModelParameterSet::getModel ( ) const

Retrieve the model the parameter set is storing values for

Returns: CModel * pModel

References mpModel.

Referenced by CModelParameterSet(), CModelParameter::getModel(), and CModelParameterSpecies::getName().

◆ getModelParameter()

const CModelParameter * CModelParameterSet::getModelParameter ( const std::string & cn ) const

Retrieve a pointer to the parameter with the given CN

Parameters

const std::string & cn

Returns: const CModelParameter * pModelParameter

References CModelParameterGroup::getModelParameter().

Referenced by applyValueToParameterSet(), assignSetContent(), CUndoData::getObject(), and CModelParameter::refreshFromModel().

◆ getName()

std::string CModelParameterSet::getName ( ) const

virtual

Retrieve the name of the parameter set

Returns: std::string name

Reimplemented from CModelParameter.

References CDataObject::getObjectName().

◆ init()

void CModelParameterSet::init ( )

private

◆ insert()

CUndoObjectInterface * CModelParameterSet::insert ( const CData & data )

virtual

Create and insert an undo object based on the given data. This method needs to be re-implemented in container which support INSERT and REMOVE

Parameters

const CData & data

Returns: CUndoObjectInterface * pUndoObject

Reimplemented from CDataContainer.

References CModelParameterGroup::add(), CModelParameter::Compartment, CModelParameter::fromData(), CModelParameterGroup::getModelParameter(), CData::getProperty(), CModelParameterReactionParameter::getReactionCN(), CModelParameter::Group, CModelParameter::Model, CModelParameter::ModelValue, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, CData::OBJECT_NAME, CData::OBJECT_TYPE, CModelParameter::Reaction, CModelParameter::ReactionParameter, CModelParameter::Set, CModelParameter::setCN(), CModelParameter::Species, toEnum(), CDataValue::toString(), CModelParameter::TypeNames, and CModelParameter::unknown.

Referenced by CModelParameterGroup::applyData().

◆ isActive()

bool CModelParameterSet::isActive ( ) const

Determine whether this is parameter set is currently active, i.e., it is synchronized with the model.

Returns: bool isActive

References CModel::getActiveModelParameterSet(), getKey(), mKey, and mpModel.

Referenced by CModelParameter::setValue(), CModelParameterCompartment::setValue(), and CModelParameterSpecies::setValue().

◆ refreshFromModel()

bool CModelParameterSet::refreshFromModel ( const bool & modifyExistence )

virtual

Refresh the parameter from the corresponding model object

Parameters

const bool & modifyExistence

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::refreshFromModel().

Referenced by CModel::refreshActiveParameterSet(), CDataModel::saveModel(), and CDataModel::saveModelToString().

◆ saveToStream()

bool CModelParameterSet::saveToStream	(	std::ostream &	os,
		const CCore::Framework &	framework,
		const std::string &	mode,
		const std::string &	separator
	)

Save the parameter set to a stream

Parameters

std::ostream	& os
const	CCore::Framework & framework
const	std::string & mode (report, ini or table)
const	std::string & separator

References CNodeIteratorMode::After, CNodeIteratorMode::Before, C_FLOAT64, CCore::Concentration, CNodeContextIterator< Node, Context >::end(), CMetab::getInitialConcentrationReference(), CModelEntity::getInitialValueReference(), CDataObject::getObjectDisplayName(), CModelParameter::Group, CNodeContextIterator< Node, Context >::level(), CNodeContextIterator< Node, Context >::next(), CModelParameter::Set, and CNodeContextIterator< Node, Context >::setProcessingModes().

◆ setModel()

void CModelParameterSet::setModel ( const CModel * pModel )

Set the model the parameter set is storing values for

Parameters

const CModel * pModel

◆ setObjectParent()

bool CModelParameterSet::setObjectParent ( const CDataContainer * pParent )

virtual

Set the object parent

Parameters

const CDataContainer * pParent

Returns: bool success

Reimplemented from CDataObject.

References CDataObject::getObjectAncestor(), mpModel, and CDataObject::setObjectParent().

Referenced by CModelParameterSet().

◆ toData()

CData CModelParameterSet::toData ( ) const

virtual

Retrieve the data describing the object

Returns: CData data

Reimplemented from CDataContainer.

References CData::appendData(), CAnnotation::toData(), CModelParameterGroup::toData(), and CDataContainer::toData().

◆ toGroup() [1/2]

CModelParameterGroup * CModelParameterSet::toGroup ( )

Referenced by CModelParameterSpecies::compile(), CModelParameterReactionParameter::compile(), ModelParameterSetHandler::processStart(), and CModelParameterSpecies::setValue().

◆ toGroup() [2/2]

const CModelParameterGroup * CModelParameterSet::toGroup ( ) const

◆ toSet() [1/2]

CModelParameterSet * CModelParameterSet::toSet ( )

virtual

Reimplemented from CModelParameter.

◆ toSet() [2/2]

const CModelParameterSet * CModelParameterSet::toSet ( ) const

virtual

Reimplemented from CModelParameter.

◆ updateIndex()

void CModelParameterSet::updateIndex	(	const size_t &	index,
		const CUndoObjectInterface *	pUndoObject
	)

virtual

Update the index of a contained object This method needs to be re-implemented in container which care about the order of contained objects

Parameters

const	size_t & index
const	CUndoObjectInterface * pUndoObject

Reimplemented from CModelParameterGroup.

References CUndoObjectInterface::updateIndex().

◆ updateModel()

bool CModelParameterSet::updateModel ( )

virtual

Update the corresponding model object with the current parameter settings

Reimplemented from CModelParameterGroup.

References compile(), mpModel, CCore::ParticleNumbers, CModel::updateInitialValues(), and CModelParameterGroup::updateModel().

Referenced by CModel::applyActiveParameterSet(), CDataModel::commonAfterLoad(), and SEDMLImporter::importModel().

Member Data Documentation

◆ mKey

std::string CModelParameterSet::mKey

private

The unique key of the set

Referenced by CModelParameterSet(), getKey(), isActive(), and ~CModelParameterSet().

◆ mpCompartments

CModelParameterGroup* CModelParameterSet::mpCompartments

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

◆ mpModel

CModel* CModelParameterSet::mpModel

private

A pointer to the model the parameter set is storing values for

Referenced by CModelParameterSet(), compareWithModel(), createFromModel(), getModel(), isActive(), setObjectParent(), and updateModel().

◆ mpModelValues

CModelParameterGroup* CModelParameterSet::mpModelValues

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

◆ mpReactions

CModelParameterGroup* CModelParameterSet::mpReactions

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

◆ mpSpecies

CModelParameterGroup* CModelParameterSet::mpSpecies

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

◆ mpTimes

CModelParameterGroup* CModelParameterSet::mpTimes

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

The documentation for this class was generated from the following files:

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ CModelParameterSet() [1/2]

◆ CModelParameterSet() [2/2]

◆ ~CModelParameterSet()

Member Function Documentation

◆ add()

◆ applyData()

◆ assignSetContent()

◆ begin()

◆ compareWithModel()

◆ compile()

◆ createFromModel()

◆ createUndoData()

◆ destruct()

◆ diff()

◆ end()

◆ fromData()

◆ getCN()

◆ getIndex()

◆ getKey()

◆ getModel()

◆ getModelParameter()

◆ getName()

◆ init()

◆ insert()

◆ isActive()

◆ refreshFromModel()

◆ saveToStream()

◆ setModel()

◆ setObjectParent()

◆ toData()

◆ toGroup() [1/2]

◆ toGroup() [2/2]

◆ toSet() [1/2]

◆ toSet() [2/2]

◆ updateIndex()

◆ updateModel()

Member Data Documentation

◆ mKey

◆ mpCompartments

◆ mpModel

◆ mpModelValues

◆ mpReactions

◆ mpSpecies

◆ mpTimes