#include <CRDFNode.h>

Public Member Functions
CRDFTriplet	addEdge (const CRDFPredicate &predicate, CRDFNode *pObject)

bool	addTripletToGraph (const CRDFTriplet &triplet) const

	CRDFNode (CRDFGraph &graph)

std::set< CRDFTriplet >	getDescendantsWithPredicate (const CRDFPredicate &predicate) const

const std::string &	getFieldValue (const CRDFPredicate::ePredicateType &predicate) const

const std::string &	getId () const

CRDFObject &	getObject ()

const CRDFObject &	getObject () const

CRDFPredicate::Path	getPath () const

const CRDFSubject &	getSubject () const

bool	hasAncestor (const CRDFNode *pNode) const

bool	isBagNode () const

bool	isBlankNode () const

bool	isObjectNode () const

bool	isReadOnly () const

bool	isSubjectNode () const

bool	removeEdge (const CRDFPredicate &predicate, CRDFNode *pObject)

bool	removeTripletFromGraph (const CRDFTriplet &triplet) const

bool	setFieldValue (const CMIRIAMResourceObject &value, const CRDFPredicate::ePredicateType &predicate, const CRDFPredicate::Path &nodePath)

bool	setFieldValue (const std::string &value, const CRDFPredicate::ePredicateType &predicate, const CRDFPredicate::Path &nodePath)

void	setId (const std::string &id)

void	setObject (const CRDFObject &object)

void	setSubject (const CRDFSubject &subject)

	~CRDFNode ()

Private Member Functions
	CRDFNode ()

	CRDFNode (const CRDFNode &CRDFNode)

CRDFNode *	createMissingAncestors (const CRDFPredicate::Path &nodePath, const CRDFPredicate::ePredicateType &predicate, CRDFPredicate::sAllowedLocation const *&pLocation)

CRDFNode *	createMissingAncestors (const CRDFPredicate::Path &predicatePath, const size_t &level)

CRDFNode &	operator= (const CRDFNode &rhs)

Private Attributes
CRDFGraph &	mGraph

std::string	mId

bool	mIsBlankNode

CRDFObject *	mpObject

CRDFSubject *	mpSubject

Constructor & Destructor Documentation

◆ CRDFNode() [1/3]

CRDFNode::CRDFNode ( )

private

Default Constructor

◆ CRDFNode() [2/3]

CRDFNode::CRDFNode ( const CRDFNode & CRDFNode )

private

◆ CRDFNode() [3/3]

CRDFNode::CRDFNode ( CRDFGraph & graph )

Specific Constructor

Parameters

CRDFGraph & graph

◆ ~CRDFNode()

CRDFNode::~CRDFNode ( )

Destructor

References mpObject, mpSubject, and pdelete.

Member Function Documentation

◆ addEdge()

CRDFTriplet CRDFNode::addEdge	(	const CRDFPredicate &	predicate,
		CRDFNode *	pObject
	)

Add a property edge to the node.

Parameters

const	CRDFPredicate & edge
CRDFNode	* pObject

Returns: CRDFTriplet triplet

References CRDFGraph::addTriplet(), addTripletToGraph(), CRDFGraph::getTriplets(), isBagNode(), mGraph, CRDFPredicate::rdf_li, CRDFPredicate::rdf_type, CRDFObject::RESOURCE, CRDFObject::setResource(), and CRDFObject::setType().

Referenced by CRDFGraph::addTriplet(), CRDFGraphConverter::convert(), CRDFGraph::moveTriplet(), and CBiologicalDescription::setPredicate().

◆ addTripletToGraph()

bool CRDFNode::addTripletToGraph ( const CRDFTriplet & triplet ) const

This method is for internal use only. The method is declared public since friend declarations may not refer to public methods.

Parameters

const CRDFTriplet & triplet

Returns: bool success.

References CRDFGraph::addTriplet(), and mGraph.

Referenced by addEdge().

◆ createMissingAncestors() [1/2]

CRDFNode * CRDFNode::createMissingAncestors	(	const CRDFPredicate::Path &	nodePath,
		const CRDFPredicate::ePredicateType &	predicate,
		CRDFPredicate::sAllowedLocation const *&	pLocation
	)

private

References C_INVALID_INDEX, CRDFPredicate::getAllowedLocationList(), CRDFPredicate::getSubPathIndex(), and isSubjectNode().

Referenced by setFieldValue().

◆ createMissingAncestors() [2/2]

CRDFNode * CRDFNode::createMissingAncestors	(	const CRDFPredicate::Path &	predicatePath,
		const size_t &	level
	)

private

References CRDFGraph::addTriplet(), CRDFObject::BLANK_NODE, CRDFGraph::generatedNodeId(), getDescendantsWithPredicate(), getSubject(), CRDFPredicate::getURI(), mGraph, CRDFTriplet::pObject, and CRDFObject::setType().

◆ getDescendantsWithPredicate()

std::set< CRDFTriplet > CRDFNode::getDescendantsWithPredicate ( const CRDFPredicate & predicate ) const

References CRDFGraph::getPredicatePath(), CRDFGraph::getTriplets(), and mGraph.

Referenced by CRDFGraphConverter::convert(), createMissingAncestors(), CReference::CReference(), getFieldValue(), CMIRIAMInfo::load(), CMIRIAMInfo::loadBiologicalDescriptions(), CMIRIAMInfo::loadCreators(), CMIRIAMInfo::loadModifications(), CMIRIAMInfo::loadReferences(), setFieldValue(), CReference::setId(), CReference::setResource(), and CSBMLExporter::updateMIRIAMAnnotation().

◆ getFieldValue()

const std::string & CRDFNode::getFieldValue ( const CRDFPredicate::ePredicateType & predicate ) const

Retrieve the string representation of the property predicate

Parameters

const CRDFPredicate::ePredicateType & predicate

Returns: const std::string & fieldValue

References CRDFObject::BLANK_NODE, CRDFObject::getBlankNodeID(), getDescendantsWithPredicate(), CRDFLiteral::getLexicalData(), CRDFObject::getLiteral(), CRDFObject::getResource(), CRDFObject::getType(), CRDFObject::LITERAL, and CRDFObject::RESOURCE.

Referenced by CMIRIAMInfo::getCreatedDT(), CModification::getDate(), CReference::getDescription(), CCreator::getEmail(), CCreator::getFamilyName(), CCreator::getGivenName(), and CCreator::getORG().

◆ getId()

const std::string & CRDFNode::getId ( ) const

Retrieve the Id of the node

Returns: const std::string & id

References mId.

◆ getObject() [1/2]

CRDFObject & CRDFNode::getObject ( )

Retrieve the object data of the node. It is recommended to call isObjectNode before retrieving the object.

Returns: CRDFObject & object

References mpObject.

Referenced by CRDFGraph::addTriplet(), CMIRIAMResourceObject::CMIRIAMResourceObject(), CRDFGraph::destroyUnreferencedNode(), operator<<(), setFieldValue(), CBiologicalDescription::setId(), CReference::setId(), CMIRIAMResourceObject::setNode(), CBiologicalDescription::setResource(), and CReference::setResource().

◆ getObject() [2/2]

const CRDFObject & CRDFNode::getObject ( ) const

Retrieve the object data of the node. It is recommended to call isObjectNode before retrieving the object.

Returns: const CRDFObject & object

References mpObject.

◆ getPath()

CRDFPredicate::Path CRDFNode::getPath ( ) const

Retrieve a predicate path to the node.

Returns: CRDFPredicate::Path path

References CRDFGraph::getPredicatePath(), and mGraph.

Referenced by CCreator::CCreator(), CModification::CModification(), CRDFGraphConverter::convert(), CReference::CReference(), CMIRIAMInfo::load(), CMIRIAMInfo::loadBiologicalDescriptions(), CMIRIAMInfo::loadCreators(), CMIRIAMInfo::loadReferences(), and CMIRIAMInfo::setCreatedDT().

◆ getSubject()

const CRDFSubject & CRDFNode::getSubject ( ) const

Retrieve the subject data of the node. It is recommended to call isSubjectNode before retrieving the subject.

Returns: const CRDFSubject & subject

References mpSubject.

Referenced by CRDFGraphConverter::convert(), CMIRIAMInfo::createBiologicalDescription(), CMIRIAMInfo::createCreator(), createMissingAncestors(), CMIRIAMInfo::createModification(), CMIRIAMInfo::createReference(), CRDFGraph::guessGraphRoot(), operator<<(), CMIRIAMInfo::setCreatedDT(), and setFieldValue().

◆ hasAncestor()

bool CRDFNode::hasAncestor ( const CRDFNode * pNode ) const

Check whether the given node is in the path, i.e., has the given node as an ancestor

Parameters

const CRDFNode * pNode

Returns: bool hasAncestor

References CRDFGraph::getParentSubjects(), and mGraph.

◆ isBagNode()

bool CRDFNode::isBagNode ( ) const

Check whether this is a bag node

Returns: isBagNode

References CRDFGraph::getTriplets(), mGraph, and CRDFPredicate::rdf_type.

Referenced by addEdge(), CRDFGraphConverter::convert(), removeEdge(), and CRDFGraph::removeEmptyNodes().

◆ isBlankNode()

bool CRDFNode::isBlankNode ( ) const

Check whether this is a blank node

Returns: bool isBlankNode

References mIsBlankNode.

◆ isObjectNode()

bool CRDFNode::isObjectNode ( ) const

Check whether this is a object node

Returns: bool isObjectNode

References mpObject.

Referenced by CRDFGraph::addTriplet().

◆ isReadOnly()

bool CRDFNode::isReadOnly ( ) const

Check whether the node is read only

Returns: bool isReadOnly

References CRDFGraph::getPredicatePath(), CRDFPredicate::isReadOnly(), and mGraph.

◆ isSubjectNode()

bool CRDFNode::isSubjectNode ( ) const

Check whether this is a subject node

Returns: bool isSubjectNode

References mpSubject.

Referenced by CRDFGraph::addTriplet(), createMissingAncestors(), and CRDFGraph::guessGraphRoot().

◆ operator=()

CRDFNode& CRDFNode::operator= ( const CRDFNode & rhs )

private

◆ removeEdge()

bool CRDFNode::removeEdge	(	const CRDFPredicate &	predicate,
		CRDFNode *	pObject
	)

Remove a property edge from the node.

Parameters

const	CRDFPredicate & edge
CRDFNode	* pObject

Returns: true, if an element was deleted, false otherwise

References CRDFGraph::getTriplets(), isBagNode(), mGraph, CRDFPredicate::rdf_li, removeEdge(), and removeTripletFromGraph().

Referenced by CBiologicalDescription::clearInvalidEntries(), CRDFGraphConverter::convert(), CRDFGraph::moveTriplet(), removeEdge(), CRDFGraph::removeTriplet(), and CBiologicalDescription::setPredicate().

◆ removeTripletFromGraph()

bool CRDFNode::removeTripletFromGraph ( const CRDFTriplet & triplet ) const

This method is for internal use only. The method is declared public since friend declarations may not refer to public methods.

Parameters

const CRDFTriplet & triplet

Returns: true, if an element was deleted, false otherwise

References mGraph, and CRDFGraph::removeTriplet().

Referenced by removeEdge(), and setFieldValue().

◆ setFieldValue() [1/2]

bool CRDFNode::setFieldValue	(	const CMIRIAMResourceObject &	value,
		const CRDFPredicate::ePredicateType &	predicate,
		const CRDFPredicate::Path &	nodePath
	)

Set the field value for the property predicate

Parameters

const	CMIRIAMResource & value
const	CRDFPredicate::ePredicateType & predicate
const	CRDFPredicate::Path & nodePath

Returns: bool success

References CRDFGraph::addTriplet(), createMissingAncestors(), CMIRIAMResourceObject::getNode(), getSubject(), CMIRIAMResourceObject::getURI(), CRDFPredicate::getURI(), CMIRIAMResourceObject::isValid(), mGraph, CRDFObject::RESOURCE, setFieldValue(), and CRDFObject::setType().

Referenced by CReference::clearInvalidEntries(), CMIRIAMInfo::setCreatedDT(), CModification::setDate(), CReference::setDescription(), CCreator::setEmail(), CCreator::setFamilyName(), setFieldValue(), CCreator::setGivenName(), CReference::setId(), CCreator::setORG(), and CReference::setResource().

◆ setFieldValue() [2/2]

bool CRDFNode::setFieldValue	(	const std::string &	value,
		const CRDFPredicate::ePredicateType &	predicate,
		const CRDFPredicate::Path &	nodePath
	)

Set the field value for the property predicate

Parameters

const	std::string & value
const	CRDFPredicate::ePredicateType & predicate
const	CRDFPredicate::Path & nodePath

Returns: bool success

References CRDFGraph::addTriplet(), CRDFObject::BLANK_NODE, createMissingAncestors(), fatalError, CRDFGraph::generatedNodeId(), getDescendantsWithPredicate(), CRDFObject::getLiteral(), getObject(), getSubject(), CRDFObject::getType(), CRDFPredicate::getURI(), CRDFObject::LITERAL, mGraph, CRDFLiteral::PLAIN, CRDFTriplet::pObject, removeTripletFromGraph(), CRDFObject::RESOURCE, CRDFLiteral::setLexicalData(), CRDFObject::setResource(), CRDFLiteral::setType(), CRDFObject::setType(), and CRDFPredicate::sAllowedLocation::Type.

◆ setId()

void CRDFNode::setId ( const std::string & id )

Set the Id of the node

Parameters

const std::string & id

References mId.

◆ setObject()

void CRDFNode::setObject ( const CRDFObject & object )

Set the object data of the node

Parameters

const CRDFObject & object

References CRDFObject::BLANK_NODE, CRDFSubject::BLANK_NODE, CRDFObject::getBlankNodeID(), CRDFObject::getType(), mId, mIsBlankNode, mpObject, mpSubject, pdelete, CRDFSubject::setBlankNodeId(), and CRDFSubject::setType().

Referenced by CRDFGraph::addTriplet().

◆ setSubject()

void CRDFNode::setSubject ( const CRDFSubject & subject )

Set the subject data of the node

Parameters

const CRDFSubject & subject

References CRDFObject::BLANK_NODE, CRDFSubject::BLANK_NODE, CRDFSubject::getBlankNodeID(), CRDFSubject::getType(), mId, mIsBlankNode, mpObject, mpSubject, pdelete, CRDFObject::setBlankNodeId(), and CRDFObject::setType().

Referenced by CRDFGraph::addTriplet(), and CRDFGraph::createAboutNode().

Member Data Documentation

◆ mGraph

CRDFGraph& CRDFNode::mGraph

private

The graph in which the node is located.

Referenced by addEdge(), addTripletToGraph(), createMissingAncestors(), getDescendantsWithPredicate(), getPath(), hasAncestor(), isBagNode(), isReadOnly(), removeEdge(), removeTripletFromGraph(), and setFieldValue().

◆ mId

std::string CRDFNode::mId

private

The Id of the node

Referenced by getId(), setId(), setObject(), and setSubject().

◆ mIsBlankNode

bool CRDFNode::mIsBlankNode

private

Stores whether this is a blank node

Referenced by isBlankNode(), setObject(), and setSubject().

◆ mpObject

CRDFObject* CRDFNode::mpObject

mutableprivate

A pointer to the object if of type OBJECT or BOTH

Referenced by getObject(), isObjectNode(), setObject(), setSubject(), and ~CRDFNode().

◆ mpSubject

CRDFSubject* CRDFNode::mpSubject

mutableprivate

A pointer to the subject if of type SUBJECT or BOTH

Referenced by getSubject(), isSubjectNode(), setObject(), setSubject(), and ~CRDFNode().

The documentation for this class was generated from the following files:

Public Member Functions

Private Member Functions

Private Attributes

Constructor & Destructor Documentation

◆ CRDFNode() [1/3]

◆ CRDFNode() [2/3]

◆ CRDFNode() [3/3]

◆ ~CRDFNode()

Member Function Documentation

◆ addEdge()

◆ addTripletToGraph()

◆ createMissingAncestors() [1/2]

◆ createMissingAncestors() [2/2]

◆ getDescendantsWithPredicate()

◆ getFieldValue()

◆ getId()

◆ getObject() [1/2]

◆ getObject() [2/2]

◆ getPath()

◆ getSubject()

◆ hasAncestor()

◆ isBagNode()

◆ isBlankNode()

◆ isObjectNode()

◆ isReadOnly()

◆ isSubjectNode()

◆ operator=()

◆ removeEdge()

◆ removeTripletFromGraph()

◆ setFieldValue() [1/2]

◆ setFieldValue() [2/2]

◆ setId()

◆ setObject()

◆ setSubject()

Member Data Documentation

◆ mGraph

◆ mId

◆ mIsBlankNode

◆ mpObject

◆ mpSubject