- i -

• CILDMMethod() : CILDMMethod
• CILDMModifiedMethod() : CILDMModifiedMethod
• CIndex() : CZeroSet::CIndex
• CIndexedPriorityQueue() : CIndexedPriorityQueue
• CInfo() : CInfo
• CInternalSolver() : CInternalSolver
• CIssue() : CIssue
• I() : Cmd5
• icon() : CQIconResource
• ignorableWhitespace() : CStructureParser
• ignoreDiscontinuityEvent() : CMathContainer
• ignoreOutput() : SedmlImportOptions
• II() : Cmd5
• ImageHandler() : ImageHandler
• importEvent() : SBMLImporter
• importEvents() : SBMLImporter
• importFirstSBMLModel() : SEDMLImporter
• importFunctionDefinitions() : SBMLImporter
• importInitialAssignments() : SBMLImporter
• importMIRIAM() : SBMLImporter
• importModel() : SEDMLImporter
• importNotes() : SBMLImporter
• importOutputs() : SEDMLImporter
• importReport() : SEDMLImporter
• importRule() : SBMLImporter
• importRuleForModelEntity() : SBMLImporter
• importSBML() : CDataModel
• importSBMLFromString() : CDataModel
• importSBMLRule() : SBMLImporter
• importSEDML() : CDataModel
• importSEDMLFromString() : CDataModel
• importTask() : SEDMLImporter
• importTasks() : SEDMLImporter
• importUnit() : SBMLUnitSupport
• importUnitsFromSBMLDocument() : SBMLUnitSupport
• increaseAllocation() : CTimeSeries
• increment() : CMathDependencyNodeIterator , CNodeContextIterator< Node, Context >
• incrementCounters() : COptProblem
• influencesIntervals() : COptItem
• infNorm() : CRungeKutta
• inforefset() : COptMethodSS
• init() : CChemEqInterface , CContext< Data > , Cmd5 , CModelParameterSet , COptions , CPermutation , CQIconResource , CReactionInterface , CRootContainer , CScanMethod , CXMLHandler
• init_by_array() : Cmt19937
• initCallParameters() : CFunctionParameterMap
• initCompartment() : CMetab
• initConversionFactor() : CMoiety
• initDebugProblem() : CSensProblem
• initDefaults() : CLRenderPoint
• initExtendedTimeSeries() : CExperiment
• initFileBuffer() : CReadConfig
• initFromLayout() : CCopasiSpringLayout
• initialize() : CAnalyticsMethod , CAnalyticsTask , CBitPatternMethod , CBitPatternTreeMethod , CCopasiProblem , CCopasiTask , CCrossSectionMethod , CCrossSectionTask , CEFMAlgorithm , CEFMMethod , CEFMProblem , CEFMTask , CEigen , CFitProblem , CFitTask , CLNATask , CLyapTask , CMathEvent::CAssignment , CMathEvent::CTrigger::CRootProcessor , CMathEvent::CTrigger , CMathEvent , CMathHistoryCore , CMathObject , CMathReaction , CMCATask , CMoietiesTask , Cmt19937 , CNewtonMethod , COptMethod , COptMethodCoranaWalk , COptMethodDE , COptMethodEP , COptMethodGA , COptMethodGASR , COptMethodHookeJeeves , COptMethodLevenbergMarquardt , COptMethodNelderMead , COptMethodNL2SOL , COptMethodPraxis , COptMethodPS , COptMethodSA , COptMethodSRES , COptMethodSS , COptMethodStatistics , COptMethodSteepestDescent , COptMethodTruncatedNewton , COptPopulationMethod , COptProblem , COptTask , COscillationMethod , COscillationMethodIntegrate , COscillationProblem , COscillationTask , COutputAssistant , Cr250 , CRandom , CRandomSearch , CRDFPredicate , CRootFinder , CRungeKutta , CScanTask , CSensMethod , CSensTask , CSSAMethod , CSteadyStateMethod , CSteadyStateProblem , CSteadyStateTask , CTimeSensTask , CTrajectoryTask , CTSSATask , CVectorCore< CType >
• initialize_gl_extension_functions() : CLLayoutRenderer
• initializeAtolVector() : CMathContainer , CModel
• initializeChildren() : CRootContainer
• initializeContent() : SEDMLImporter
• initializeDefaultUnits() : CSBMLunitInterface
• initializeDerivativesCalculations() : CTimeSensMethod
• initializeDiscontinuousCreationPointer() : CMathContainer
• initializeEvents() : CMathContainer
• initializeFromFunctionParameters() : CFunctionParameterMap
• initializeFromSBMLModel() : CSBMLunitInterface
• initializeIndexPointer() : CIndexedPriorityQueue
• initializeMathObjects() : CMathContainer
• initializeMetabolites() : CModel
• initializeObjects() : CMathContainer
• initializeOutput() : CCSPMethod , CILDMMethod , CILDMModifiedMethod , CTSSAMethod
• initializeParameter() : CAnalyticsProblem , CCheckForUpdates , CConfigurationFile , CCrossSectionProblem , CCrossValidationSet , CCSPMethod , CEFMProblem , CExperiment , CExperimentObjectMap::CDataColumn , CExperimentObjectMap , CExperimentSet , CFitItem , CFitProblem , CHybridMethod , CHybridMethodODE45 , CHybridNextReactionLSODAMethod , CHybridNextReactionRKMethod , CILDMMethod , CILDMModifiedMethod , CLNAMethod , CLsodaMethod2 , CLsodaMethod , CLyapProblem , CLyapWolfMethod , CMCAMethod , CMIRIAMResource , CMIRIAMResources , CNewtonMethod , COptItem , COptProblem , COscillationProblem , CRadau5Method , CRecentFiles , CScanProblem , CSensProblem , CSteadyStateMethod , CStochasticRungeKuttaRI5 , CStochDirectMethod , CStochMethod , CTauLeapMethod , CTimeSensLsodaMethod , CTimeSensProblem , CTrajAdaptiveSA , CTrajectoryMethodDsaLsodar , CTrajectoryProblem , CTSSAMethod , CTSSAProblem
• initializeParameterMapping() : CReaction
• initializeParameters() : CReaction
• initializePointers() : CMathContainer
• initializeScalingMatrix() : CExperiment
• initializeSubtaskBeforeOutput() : COptProblem
• InitialStateHandler() : InitialStateHandler
• initMapping() : CReactionInterface
• initMethod() : CStochMethod , CStochNextReactionMethod
• initMiriamAnnotation() : CAnnotation
• initNamespaces() : CRDFWriter
• initObjects() : CAnalyticsProblem , CAnalyticsTask , CBitPatternMethod , CBitPatternTreeMethod , CChemEqElement , CCompartment , CCopasiTask , CCrossSectionProblem , CCrossSectionTask , CDataContainer , CEFMAlgorithm , CEFMProblem , CEigen , CEvaluationTree , CEvent , CExpression , CFitProblem , CFittingPoint , CFunctionDB , CLNAMethod , CLyapTask , CMCAMethod , CMetab , CModel , CModelEntity , CModelValue , CMoiety , COptMethodCoranaWalk , COptMethodDE , COptMethodEP , COptMethodGA , COptMethodGASR , COptMethodHookeJeeves , COptMethodLevenbergMarquardt , COptMethodNelderMead , COptMethodNL2SOL , COptMethodPraxis , COptMethodPS , COptMethodSA , COptMethodSRES , COptMethodSS , COptMethodSteepestDescent , COptMethodTruncatedNewton , COptPopulationMethod , COptProblem , COscillationMethodIntegrate , COscillationProblem , CPlotItem , CPlotSpecification , CRandomSearch , CReaction , CSensProblem , CStatistics , CSteadyStateTask , CTimeSensProblem , CTrajectoryProblem , CTSSAProblem
• initOneVar() : CMathDerive
• initpc_() : CTruncatedNewton
• initResult() : CTimeSensMethod
• initSubtask() : CScanTask
• initVariables() : CFunction
• insert() : CCopasiParameterGroup , CDataContainer , CDataObjectMap , CDataVector< CType > , CMathUpdateSequence , CModelParameterGroup , CModelParameterSet , CSparseMatrix , CUndoData , CUndoObjectInterface
• insertDeterministicReaction() : CHybridMethod
• insertStochReaction() : CIndexedPriorityQueue
• integrateDeterministicPart() : CHybridMethod , CHybridMethodODE45 , CHybridNextReactionLSODAMethod , CHybridNextReactionRKMethod , CTrajectoryMethodDsaLsodar
• integrateReducedModel() : CTimeSensMethod , CTrajectoryMethod
• integrationMethodStart() : CTSSAMethod
• integrationStep() : CTSSAMethod
• internalStep() : CStochasticRungeKuttaRI5
• interpolation() : CRungeKutta
• intersection() : CZeroSet
• intialize() : CTrajectoryMethodDsaLsodar::CPartition
• inValidValues() : CCopasiParameter
• invert() : CFunctionAnalyzer::CValue , CSBMLunit
• is2DTransformation() : CLTransformation
• is_curve_segment_visible() : CLLayoutRenderer
• is_curve_visible() : CLLayoutRenderer
• isActive() : CModelParameterSet , CPlotSpecification
• isAutonomous() : CMathContainer , CModel
• isBagNode() : CRDFNode
• isBasic() : CCopasiParameter
• isBezier() : CLLineSegment
• isBlankNode() : CRDFNode
• isBlockDiagonal() : CCSPMethod
• isBoolean() : CEvaluationNode , CEvaluationNodeCall , CEvaluationTree
• isBooleanRequired() : CEvaluationNodeCall
• isBuiltInFunctionCall() : CSBMLunitInterface
• isBuiltinUnitSymbol() : CUnitDefinition
• isChanged() : CDataModel , CMathDependencyNode
• isChangedProperty() : CUndoData
• isCitation() : CMIRIAMResources
• isCompatible() : CVersion
• isCompileNecessary() : CModel
• isComplex() : SedmlInfo
• isConflict() : CSBMLunitInformation
• isConstantFlux() : SBMLImporter
• isContinuous() : CLCurve
• isDefault() : CCopasiParameter
• isDefaultOrEmpty() : CCellDesignerImporter
• isDelayFunctionUsed() : SBMLImporter
• isDependent() : CMetab
• isDimensionless() : CSBMLunit , CUnit
• isDir() : CDirEntry
• isDisabled() : CMathEvent
• isDividedByVolume() : CSBMLExporter
• isEditable() : CCopasiParameter
• isEmpty() : CDataArray , CLBoundingBox , CLDimensions , CLPoint , CTableCell , CTableRow
• isEmptyOrWhiteSpace() : SBMLImporter
• isEmptyString() : CODEExporter
• isEnabled() : CCheckForUpdates , CRegisteredCommonName
• isEqual() : CSBMLunit , CSBMLunit::SymbolicExponent , CSBMLunitInformation
• isEquality() : CMathEvent::CTrigger::CRootProcessor
• isEquilibrium() : CSteadyStateMethod
• isEquivalent() : CUnit
• isError() : CIssue
• isEventAssignmentSBMLCompatible() : CSBMLExporter
• isEventSBMLCompatible() : CSBMLExporter
• isExpressionSBMLCompatible() : CSBMLExporter
• isExpressionSBMLL1Compatible() : CSBMLExporter
• isExpressionSBMLL2V1Compatible() : CSBMLExporter
• isExpressionSBMLL2V3Compatible() : CSBMLExporter
• isExtremeRay() : CBitPatternTree , CZeroSet
• isFast() : CMathReaction , CReaction
• isFile() : CDirEntry
• isFinished() : CScanItem
• isFixed() : CModelEntity
• isFunctionCall() : CSBMLunitInterface
• isIdentifier() : CNodeK
• isIdentityMatrix() : CLTransformation
• isInitialExpressionValid() : CModelParameter
• isInitialValue() : CMathObject
• isInitialValueChangeAllowed() : CMetab
• isInKeyList() : CLLocalStyle
• isInRoleList() : CLStyle
• isInsertAllowed() : CDataVectorN< CType >
• isIntensiveProperty() : CMathObject
• isInTypeList() : CLStyle
• isInvalid() : CFunctionAnalyzer::CValue
• isJacobianRequested() : CSteadyStateProblem
• isKeyInSet() : CLLocalStyle
• isKeyword() : CEvaluationNode
• isLeftValid() : CNodeK
• isLocal() : CRDFObject , CRDFSubject , CReactionParameter
• isLocalParameter() : CReaction
• isLocalURI() : CRaptorInit
• isLocalValue() : CReactionInterface
• isLocked() : CReactionInterface
• isLogX() : CPlotSpecification
• isLogY() : CPlotSpecification
• isMassAction() : SBMLImporter
• isMassActionExpression() : SBMLImporter
• isMassActionFunction() : SBMLImporter
• isMaster() : CContext< Data > , COutputHandler
• isMixingStable() : CSSAMethod
• isModelEntityExpressionODEExporterCompatible() : CODEExporter
• isModelSBMLCompatible() : CSBMLExporter
• isModelSBMLL1Compatible() : CSBMLExporter
• isModelSBMLL2V1Compatible() : CSBMLExporter
• isModelSBMLL2V3Compatible() : CSBMLExporter
• isMulticompartment() : CChemEqInterface , CReactionInterface
• isNegative() : CFunctionAnalyzer::CValue
• isNesting() : CScanItem , CScanItemRandom
• isNumber() : CNodeK , CSBMLunitInterface
• isObject() : CSBMLunitInterface
• isObjectNode() : CRDFNode
• isoFormat() : CCopasiTimeVariable
• isOne() : CDerive
• isOperator() : CNodeK , CSBMLunitInterface
• isOptionEnabled() : COutputAssistant
• isPositive() : CFunctionAnalyzer::CValue
• isPositiveDirection() : CAnalyticsProblem , CCrossSectionProblem
• isPrerequisiteForContext() : CDataObject , CDependentNumberReference , CMathObject , CObjectInterface , CTotalNumberReference
• isReactionReversed() : CSSAMethod
• isReactionScope() : CSBMLunitInterface::CEnvironmentInformation
• isReadable() : CDirEntry
• isReadOnly() : CFunction , CModelParameter , CRDFNode , CRDFPredicate , CUnitDefinition
• isRecursiveWithoutOutputs() : SedmlInfo
• isRelativePath() : CDirEntry
• isRequested() : CMathDependencyNode
• isReversed() : CFluxMode
• isReversible() : CChemEqParserBase , CFluxMode , CFunction , CReaction , CReactionInterface , CTableauLine
• isRightValid() : CNodeK
• isRowOriented() : CExperiment
• isScheduled() : CCopasiTask
• isSegmentHit() : CLLayoutRenderer
• isSelected() : CLLayoutRenderer
• isSet() : CFlags< Enum > , COptions , CZeroSet
• isSetDashArray() : CLGraphicalPrimitive1D
• isSetDeduceSpeciesReferenceRoles() : CLLayoutRenderer
• isSetEndHead() : CLGroup , CLRenderCurve
• isSetExportCOPASIMIRIAM() : CSBMLExporter
• isSetFill() : CLGraphicalPrimitive2D
• isSetFillRule() : CLGraphicalPrimitive2D
• isSetFontFamily() : CLGroup , CLText
• isSetFontSize() : CLGroup , CLText
• isSetFontStyle() : CLGroup , CLText
• isSetFontWeight() : CLGroup , CLText
• isSetImageReference() : CLImage
• isSetMatrix() : CLTransformation
• isSetMetaDataProperty() : CUndoData
• isSetProperty() : CData , CUndoData
• isSetStartHead() : CLGroup , CLRenderCurve
• isSetStroke() : CLGraphicalPrimitive1D
• isSetStrokeWidth() : CLGraphicalPrimitive1D
• isSetText() : CLText
• isSetTextAnchor() : CLGroup , CLText
• isSetVTextAnchor() : CLGroup , CLText
• isSimpleFunctionCall() : SBMLImporter
• isSingleObject() : CSensItem
• isSliderActive() : CQBaseWidget
• isSourceModified() : CVersion
• isStabilityAnalysisRequested() : CSteadyStateProblem
• isStateValid() : CMathContainer
• isStateValue() : CMathEvent::CAssignment
• isStateVariable() : CModel
• isSteadyState() : CNewtonMethod
• isSteadyStateRequested() : CLNAProblem , CMCAProblem
• isStochasticModel() : SBMLImporter
• isSubjectNode() : CRDFNode
• isSuccess() : CIssue
• isSuitable() : CFunction
• isSupported() : SedmlInfo
• isTable() : CReportDefinition
• isTaskValid() : CCopasiTask
• isTextSet() : CLTextGlyph
• isThread() : CContext< Data >
• isTrue() : CMathEvent::CTrigger::CRootProcessor , CMathEvent::CTrigger
• isTypeSupported() : CExpressionGenerator
• isUndefined() : CUnit
• isUnique() : CMetabNameInterface
• isUniqueParameter() : ParameterGroupHandler
• isUnitType() : CUnit
• isUnsupported() : CCopasiParameter
• isUpdateModel() : CCopasiTask
• isUsed() : CFunctionParameter , CModelEntity
• isValid() : CDataModel::CContent , CFitItem , CMIRIAMResourceObject , COptItem , CReactionInterface , CSlider , CTableauMatrix , CUnit , CUnitComponent , SedmlImportOptions , VariableInfo
• isValidEq() : CChemEqInterface
• isValidHandle() : CProcessReport
• isValidKey() : CKeyFactory
• isValidMethod() : CCopasiTask
• isValidProblem() : CAnalyticsMethod , CCopasiMethod , CCrossSectionMethod , CEFMMethod , CHybridMethod , CHybridMethodODE45 , CLNAMethod , CLyapMethod , CLyapWolfMethod , CMCAMethod , CNewtonMethod , COptMethod , COscillationMethod , CScanMethod , CSensMethod , CSteadyStateMethod , CStochDirectMethod , CStochMethod , CTauLeapMethod , CTimeSensMethod , CTrajAdaptiveSA , CTrajectoryMethod , CTrajectoryMethodDsaLsodar , CTSSAMethod
• isValidScanItem() : CScanItem , CScanItemLinear , CScanItemRepeat
• isValidSId() : CSBMLExporter
• isValidSubType() : CLyapMethod
• isValidValue() : CCopasiParameter
• isValidXML() : CAnnotation
• isValue() : CTableCell
• isVector() : CFunctionParameters , CReactionInterface
• isWritable() : CDirEntry
• isZero() : CCopasiTimeVariable , CDerive , CFunctionAnalyzer::CValue
• iter() : COptLogItem
• iterator() : CCopasiTree< _Node >::iterator , CDataObjectMap::iterator , CDataVector< CType >::iterator