- i -
- CILDMMethod()
: CILDMMethod
- CILDMModifiedMethod()
: CILDMModifiedMethod
- CIndex()
: CZeroSet::CIndex
- CIndexedPriorityQueue()
: CIndexedPriorityQueue
- CInternalSolver()
: CInternalSolver
- CInterpolation()
: CInterpolation
- icon()
: CQIconResource
- ignorableWhitespace()
: CStructureParser
- ImageElement()
: CCopasiXMLParser::ImageElement
- importCellDesigner()
: DataModelGUI
- importEvent()
: SBMLImporter
- importEvents()
: SBMLImporter
- importFirstSBMLModel()
: SEDMLImporter
- importFunctionDefinitions()
: SBMLImporter
- importInitialAssignments()
: SBMLImporter
- importMIRIAM()
: SBMLImporter
- importNotes()
: SBMLImporter
- importRule()
: SBMLImporter
- importRuleForModelEntity()
: SBMLImporter
- importSBML()
: CCopasiDataModel
, DataModelGUI
- importSBMLFinished()
: DataModelGUI
- importSBMLFromString()
: CCopasiDataModel
, CopasiUI3Window
, DataModelGUI
- importSBMLFromStringFinished()
: DataModelGUI
- importSBMLFromStringRun()
: DataModelGUI
- importSBMLRule()
: SBMLImporter
- importSBMLRun()
: DataModelGUI
- importTasks()
: SEDMLImporter
- increaseAllocation()
: CTimeSeries
- increment()
: CMathDependencyNodeIterator
, CNodeContextIterator< Node, Context >
- incrementEvaluations()
: COptProblem
- index()
: CQBrowserPaneDM
, CQParameterOverviewDM
- inforefset()
: COptMethodSS
- information()
: CQMessageBox
- init()
: BezierCurve
, CCopasiRootContainer
, CLNAResultSubwidget
, CMathContainer
, CMCAResultSubwidget
, COptions
, CPermutation
, CQAnimationWindow
, CQCompartment
, CQCrossSectionTaskWidget
, CQCurrentValueTable
, CQDifferentialEquations
, CQEventWidget1
, CQExperimentData
, CQExperimentSelection
, CQExpressionMmlStackedWidget
, CQFittingItemWidget
, CQFittingResult
, CQFittingResultTab1
, CQFittingWidget
, CQIconResource
, CQLNAWidget
, CQLyapResultWidget
, CQLyapWidget
, CQMCAWidget
, CQModelValue
, CQMoietiesTaskResult
, CQMoietiesTaskWidget
, CQOptimizationResult
, CQOptimizationWidget
, CQOscillationTaskWidget
, CQPreferenceDialog
, CQProgressDialog
, CQProgressItemBar
, CQSensResultWidget
, CQSplashWidget
, CQSteadyStateResult
, CQTrajectoryWidget
, CQTSSAResultSubWidget
, CQTSSAWidget
, CScanMethod
, CScanWidgetRandom
, CScanWidgetRepeat
, CScanWidgetScan
, CScanWidgetTask
, CUpDownSubwidget
, CVisParameters
, FunctionWidget1
, ScrollBar
, SensitivitiesWidget
, SliderDialog
, SliderSettingsDialog
, StateSubwidget
, SteadyStateWidget
- init_by_array()
: Cmt19937
- initCallParameters()
: CFunctionParameterMap
- initCombos()
: SensitivitiesWidget
- initCompartment()
: CMetab
- initConversionFactor()
: CMoiety
- initDebugProblem()
: CSensProblem
- initDefaults()
: CLRenderPoint
- initExtendedTimeSeries()
: CExperiment
- initFileBuffer()
: CReadConfig
- initFirstGeneration()
: CGA
- initFrom()
: CQAnimationSettingsEditor
, CQEffectDescriptionEdit
- initFromLayout()
: CCopasiSpringLayout
- initFromObject()
: CScanWidgetRandom
, CScanWidgetScan
- initFromProcessReportItem()
: CQProgressItem
, CQProgressItemBar
, CQProgressItemText
- initFromReaction()
: CReactionInterface
- initFromSpec()
: CopasiPlot
, PlotWindow
- initialize()
: CBitPatternMethod
, CBitPatternTreeMethod
, CCopasiProblem
, CCopasiTask
, CCrossSectionMethod
, CCrossSectionTask
, CEFMAlgorithm
, CEFMMethod
, CEFMProblem
, CEFMTask
, CEigen
, CFitMethod
, CFitProblem
, CFitTask
, CGA
, CLNATask
, CLyapTask
, CMathEventN::CAssignment
, CMathEventN::CTrigger::CRoot
, CMathEventN::CTrigger
, CMathEventN
, CMathObject
, CMathReaction
, CMCATask
, CMoietiesTask
, Cmt19937
, CNewtonMethod
, COptMethod
, COptMethodCoranaWalk
, COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHookeJeeves
, COptMethodLevenbergMarquardt
, COptMethodNelderMead
, COptMethodPraxis
, COptMethodPS
, COptMethodSA
, COptMethodSRES
, COptMethodSS
, COptMethodStatistics
, COptMethodSteepestDescent
, COptMethodTruncatedNewton
, COptProblem
, COptTask
, COscillationMethod
, COscillationMethodIntegrate
, COscillationProblem
, COscillationTask
, COutputAssistant
, CProcessQueue
, CQCopasiAnimation
, Cr250
, CRandom
, CRandomSearch
, CRDFPredicate
, CScanTask
, CSensMethod
, CSensTask
, CSSAMethod
, CSteadyStateMethod
, CSteadyStateProblem
, CSteadyStateTask
, CTrajectoryTask
, CTSSATask
, QConservedSpeciesAnimation
, QFluxModeAnimation
, QTimeCourseAnimation
- initialize_extension_functions()
: CQGLLayoutPainter
- initialize_gl_extension_functions()
: CLLayoutRenderer
- initializeAtol()
: CTSSAMethod
- initializeAtolVector()
: CModel
- initializeChildren()
: CCopasiRootContainer
- initializeDefaultUnits()
: CSBMLunitInterface
- initializeDiscontinuousCreationPointer()
: CMathContainer
- initializeDisplayLists()
: CQGLNetworkPainter
- initializeEvents()
: CMathContainer
- initializeFromFunctionParameters()
: CFunctionParameterMap
- initializeFromSBMLModel()
: CSBMLunitInterface
- initializeGL()
: CQGLLayoutPainter
, CQGLNetworkPainter
- initializeGraphPainter()
: CQGLNetworkPainter
- initializeIndexPointer()
: CIndexedPriorityQueue
- initializeIntegrationsParameter()
: CTSSAMethod
- initializeMathObjects()
: CMathContainer
- initializeMetaboliteKeyMap()
: CReaction
- initializeMetabolites()
: CModel
- initializeObjects()
: CMathContainer
- initializeParameter()
: CConfigurationFile
, CCrossSectionProblem
, CCrossValidationSet
, CCSPMethod
, CEFMProblem
, CExperiment
, CExperimentObjectMap::CDataColumn
, CExperimentObjectMap
, CExperimentSet
, CFitItem
, CFitProblem
, CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
, CILDMMethod
, CILDMModifiedMethod
, CLNAMethod
, CLsodaMethod
, CLyapProblem
, CLyapWolfMethod
, CMCAMethod
, CMIRIAMResource
, CMIRIAMResources
, CNewtonMethod
, COptItem
, COptProblem
, COscillationProblem
, CRecentFiles
, CScanProblem
, CSteadyStateMethod
, CStochDirectMethod
, CStochMethod
, CTauLeapMethod
, CTrajAdaptiveSA
, CTrajectoryMethodDsaLsodar
, CTrajectoryProblem
, CTSSAMethod
, CTSSAProblem
- initializeParameters()
: CReaction
- initializePointers()
: CMathContainer
- initializeResolver()
: CQLayoutScene
- initializeScalingMatrix()
: CExperiment
- initializeSubtaskBeforeOutput()
: COptProblem
- InitialStateElement()
: CCopasiXMLParser::InitialStateElement
- initMapping()
: CReactionInterface
- initMethod()
: CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
, CStochMethod
, CStochNextReactionMethod
- initNamespaces()
: CRDFWriter
- initObjects()
: CBitPatternMethod
, CBitPatternTreeMethod
, CChemEqElement
, CCompartment
, CCopasiContainer
, CCopasiTask
, CCrossSectionProblem
, CCrossSectionTask
, CEFMAlgorithm
, CEFMProblem
, CEigen
, CEvaluationTree
, CEvent
, CExpression
, CFitProblem
, CFittingPoint
, CFunctionDB
, CLNAMethod
, CLyapTask
, CMathTrigger::CRootFinder
, CMCAMethod
, CMetab
, CModel
, CModelEntity
, CModelValue
, CMoiety
, COptMethodCoranaWalk
, COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHookeJeeves
, COptMethodLevenbergMarquardt
, COptMethodNelderMead
, COptMethodPraxis
, COptMethodPS
, COptMethodSA
, COptMethodSRES
, COptMethodSS
, COptMethodSteepestDescent
, COptMethodTruncatedNewton
, COptProblem
, COscillationMethodIntegrate
, COscillationProblem
, CPlotItem
, CPlotSpecification
, CRandomSearch
, CReaction
, CSensProblem
, CSteadyStateTask
, CTrajectoryProblem
, CTSSAProblem
- initOptRandom()
: CGA
- initOrigValues()
: CLabel
- initpc_()
: CTruncatedNewton
- initSelectionTable()
: CQArrayAnnotationsWidget
- initSubtask()
: CScanTask
- initTable()
: ParameterTable
- initVariables()
: CFunction
- insert()
: CQRDFTreeView
, CSparseMatrix
, ObjectList
- insertBucket()
: ObjectList
- insertDeterministicReaction()
: CHybridMethod
, CHybridMethodLSODA
- insertProgressItem()
: CQProgressDialog
- insertRow()
: CQBaseDataModel
- insertRows()
: CQBaseDataModel
, CQBiologicalDescriptionDM
, CQCompartmentDM
, CQCreatorDM
, CQEFMNetReactionDM
, CQEFMReactionDM
, CQEFMSpeciesDM
, CQEventDM
, CQFluxModeDM
, CQFunctionDM
, CQGlobalQuantityDM
, CQLayoutsDM
, CQModifiedDM
, CQParameterSetsDM
, CQPlotDM
, CQReactionDM
, CQReferenceDM
, CQReportDM
, CQSpecieDM
, CQTimeSeriesDM
- insertStochReaction()
: CIndexedPriorityQueue
- insertValueTable()
: CQLayoutMainWindow
- insertWidget()
: CScanContainerWidget
- integrateDeterministicPart()
: CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
, CTrajectoryMethodDsaLsodar
- integrateDeterministicPartEuler()
: CHybridMethod
- integrationMethodStart()
: CTSSAMethod
- integrationStep()
: CTSSAMethod
- interpolation()
: CInterpolation
- intersection()
: CZeroSet
- intialize()
: CTrajectoryMethodDsaLsodar::CPartition
- invert()
: CFunctionAnalyzer::CValue
, CSBMLunit
- invertOrderOfPoints()
: CGraphCurve
- is2DTransformation()
: CLTransformation
- is_curve_segment_visible()
: CLLayoutRenderer
- is_curve_visible()
: CLLayoutRenderer
- isActive()
: CModelParameterSet
, CPlotSpecification
- isArray()
: CCopasiObject
- isAutonomous()
: CModel
- isBagNode()
: CRDFNode
- isBezier()
: CLLineSegment
- isBlankNode()
: CRDFNode
- isBlockDiagonal()
: CCSPMethod
- isBoolean()
: CEvaluationNode
, CEvaluationNodeCall
, CEvaluationNodeConstant
, CEvaluationNodeFunction
, CEvaluationNodeLogical
, CEvaluationParserBase
, CEvaluationTree
- isBooleanRequired()
: CEvaluationNodeCall
- isBounded()
: COptMethod
- isBuiltInFunctionCall()
: CSBMLunitInterface
- isChanged()
: CCopasiDataModel
, CMathDependencyNode
, SliderDialog
- isChecked()
: ObjectBrowserItem
- isCircleMode()
: CQGLNetworkPainter
, CQGLViewport
- isCommitOnSelect()
: CQComboDelegate
- isCompatible()
: CVersion
- isComplete()
: CQNoSelectionErrorWizardPage
- isConflict()
: CSBMLunitInformation
- isConstantFlux()
: SBMLImporter
- isContainer()
: CCopasiObject
- isContinuous()
: CLCurve
- isContradiction()
: CDimension
- isDataModel()
: CCopasiObject
- isDefaultRow()
: CQBaseDataModel
, CQEFMNetReactionDM
, CQEFMReactionDM
, CQEFMSpeciesDM
, CQFluxModeDM
, CQLayoutsDM
, CQParameterSetsDM
, CQTimeSeriesDM
- isDelayFunctionUsed()
: SBMLImporter
- isDependent()
: CMetab
- isDeprecated()
: MiriamWebServicesSoapBindingProxy
- isDimensionless()
: CSBMLunit
- isDir()
: CDirEntry
- isDisablePlots()
: Arguments
- isDisableRandomizeStartValues()
: Arguments
- isDisableStatistic()
: Arguments
- isDiscrete()
: CMathTrigger::CRootFinder
- isDividedByVolume()
: CSBMLExporter
- isEmpty()
: CArrayAnnotation
, CLPoint
, CTableCell
, CTableRow
- isEmptyString()
: CODEExporter
- isEqual()
: CNormalLogical::SetOfSetsSorter< TYPE >
, CNormalLogical::SetSorter< TYPE >
, CSBMLunit
, CSBMLunit::SymbolicExponent
, CSBMLunitInformation
, Refresh
, RefreshTemplate< CClass >
- isEquality()
: CMathTrigger::CRootFinder
- isEquilibrium()
: CSteadyStateMethod
- isEventAssignmentSBMLCompatible()
: CSBMLExporter
- isEventSBMLCompatible()
: CSBMLExporter
- isExpressionSBMLCompatible()
: CSBMLExporter
- isExpressionSBMLL1Compatible()
: CSBMLExporter
- isExpressionSBMLL2V1Compatible()
: CSBMLExporter
- isExpressionSBMLL2V3Compatible()
: CSBMLExporter
- isExtremeRay()
: CBitPatternTree
, CZeroSet
- isFast()
: CReaction
- isFile()
: CDirEntry
- isFinished()
: CScanItem
- isFixed()
: CModelEntity
- isFreeText()
: CQNotesContentHandler
, CQValidatorXML
- isFunctionCall()
: CSBMLunitInterface
- isFunctionReadOnly()
: CQFunctionDM
- isGenerateOutput()
: Arguments
- isHideWindow()
: Arguments
- isIdentifier()
: CNodeK
- isIdentityMatrix()
: CLTransformation
- isInitialConcentrationChangeAllowed()
: CMetab
- isInitialExpressionValid()
: CModelParameter
- isInitialValue()
: CMathObject
- isInKeyList()
: CLLocalStyle
- isInRoleList()
: CLStyle
- isInsertAllowed()
: CCopasiVectorN< CType >
- isIntensiveProperty()
: CMathObject
- isInTypeList()
: CLStyle
- isInvalid()
: CFunctionAnalyzer::CValue
- isInverted()
: ScrollBar
- isJacobianRequested()
: CSteadyStateProblem
- isKeyInSet()
: CLLocalStyle
- isKeyword()
: CEvaluationNode
- isLeftValid()
: CNodeK
- isLikePreviousExperiment()
: CQExperimentData
- isLocal()
: CRDFObject
, CRDFSubject
- isLocalParameter()
: CReaction
- isLocalURI()
: CRaptorInit
- isLocalValue()
: CReactionInterface
- isLocked()
: CReactionInterface
- isLogScale()
: ScrollBar
- isLogX()
: CPlotSpecification
- isLogY()
: CPlotSpecification
- isMainThread()
: CopasiUI3Window
- isMassAction()
: SBMLImporter
- isMassActionExpression()
: SBMLImporter
- isMassActionFunction()
: SBMLImporter
- isMaster()
: COutputHandler
- isMatrix()
: CCopasiObject
- isMetaboliteNameUnique()
: CQSimpleSelectionTree
- isMixingStable()
: CSSAMethod
- isModelEntityExpressionODEExporterCompatible()
: CODEExporter
- isModelSBMLCompatible()
: CSBMLExporter
- isModelSBMLL1Compatible()
: CSBMLExporter
- isModelSBMLL2V1Compatible()
: CSBMLExporter
- isModelSBMLL2V3Compatible()
: CSBMLExporter
- isMulticompartment()
: CChemEqInterface
, CReactionInterface
- isMultipliedByVolume()
: SBMLImporter
- isNameVector()
: CCopasiObject
- isNegated()
: CNormalLogical
- isNegative()
: CFunctionAnalyzer::CValue
- isNesting()
: CScanItem
, CScanItemRandom
- isNonUniqueName()
: CCopasiObject
- isNumber()
: CNodeK
, CSBMLunitInterface
- isObject()
: CSBMLunitInterface
- isObjectNode()
: CRDFNode
- isoFormat()
: CCopasiTimeVariable
- isOperator()
: CNodeK
, CSBMLunitInterface
- isPlaying()
: CQAnimationControls
, CQPlayerControlWidget
- isPositive()
: CFunctionAnalyzer::CValue
- isPositiveDirection()
: CCrossSectionProblem
- isPrerequisiteForContext()
: CConcentrationReference
, CCopasiObject
, CDependentNumberReference
, CMathObject
, CObjectInterface
, CParticleReference
, CTotalNumberReference
- isQuitAfterTaskExecution()
: Arguments
- isReactionReversed()
: CSSAMethod
- isReactionScope()
: CSBMLunitInterface::CEnvironmentInformation
- isReadable()
: CDirEntry
- isReadOnly()
: CModelParameter
, CRDFNode
, CRDFPredicate
- isReference()
: CCopasiObject
- isRelativePath()
: CDirEntry
- isRequested()
: CMathDependencyNode
- isReversed()
: CFluxMode
- isReversible()
: CChemEqParserBase
, CFluxMode
, CFunction
, CReaction
, CReactionInterface
, CTableauLine
- isRightValid()
: CNodeK
- isRoot()
: CCopasiObject
- isRowOriented()
: CExperiment
- isRunScheduled()
: Arguments
- isSaveLayout()
: Arguments
- isScheduled()
: CCopasiTask
- isSegmentHit()
: CLLayoutRenderer
- isSelected()
: CLLayoutRenderer
- isSeparator()
: CCopasiObject
- isSet()
: CZeroSet
- isSetDashArray()
: CLGraphicalPrimitive1D
- isSetDeduceSpeciesReferenceRoles()
: CLLayoutRenderer
- isSetDrawSelectionDecoration()
: CQScreenshotOptionsDialog
- isSetEndHead()
: CLGroup
, CLRenderCurve
- isSetExportCOPASIMIRIAM()
: CSBMLExporter
- isSetFill()
: CLGraphicalPrimitive2D
- isSetFillRule()
: CLGraphicalPrimitive2D
- isSetFontFamily()
: CLGroup
, CLText
- isSetFontSize()
: CLGroup
, CLText
- isSetFontStyle()
: CLGroup
, CLText
- isSetFontWeight()
: CLGroup
, CLText
- isSetImageReference()
: CLImage
- isSetMatrix()
: CLTransformation
- isSetStartHead()
: CLGroup
, CLRenderCurve
- isSetStroke()
: CLGraphicalPrimitive1D
- isSetStrokeWidth()
: CLGraphicalPrimitive1D
- isSetText()
: CLText
- isSetTextAnchor()
: CLGroup
, CLText
- isSetVTextAnchor()
: CLGroup
, CLText
- isSimpleFunctionCall()
: SBMLImporter
- isSingleObject()
: CSensItem
- isSingleSelection()
: CCopasiSelectionWidget
- isSliderActive()
: CQBaseWidget
- isSolutionStatistic()
: Arguments
- isSourceModified()
: CVersion
- isStabilityAnalysisRequested()
: CSteadyStateProblem
- isStateVariable()
: CModel
- isStaticString()
: CCopasiObject
- isSteadyState()
: CNewtonMethod
, CQOptimizationWidget
- isSteadyStateRequested()
: CLNAProblem
, CMCAProblem
- isStochasticModel()
: SBMLImporter
- isSubjectNode()
: CRDFNode
- isSuitable()
: CFunction
- isSwitchToTask()
: Arguments
- isTable()
: CReportDefinition
- isTextSet()
: CLTextGlyph
- isTrue()
: CMathTrigger::CRootFinder
- isUnique()
: CMetabNameInterface
- isUnknown()
: CDimension
- isUpdateModel()
: CCopasiTask
- isUsable()
: CEvaluationTree
- isUsed()
: CColorScale
, CFunctionParameter
, CModelEntity
- isValid()
: Arguments
, CCopasiDataModel::CData
, CEvaluationNodeDepthFirstIterator
, CFitItem
, CMiaseParser
, CMIRIAMResourceObject
, CopasiSlider
, COptItem
, CQExpressionWidget
, CReactionInterface
, CSlider
, CState
, CTableauMatrix
, MyLineEdit
- isValidEq()
: CChemEqInterface
- isValidHandle()
: CProcessReport
- isValidKey()
: CKeyFactory
- isValidMethod()
: CCopasiTask
, CEFMTask
- isValidProblem()
: CCopasiMethod
, CCrossSectionMethod
, CEFMMethod
, CFitMethod
, CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
, CLNAMethod
, CLyapMethod
, CLyapWolfMethod
, CMCAMethod
, CNewtonMethod
, COptMethod
, COscillationMethod
, CScanMethod
, CSensMethod
, CSteadyStateMethod
, CStochDirectMethod
, CStochMethod
, CTauLeapMethod
, CTrajAdaptiveSA
, CTrajectoryMethod
, CTrajectoryMethodDsaLsodar
, CTSSAMethod
- isValidScanItem()
: CScanItem
, CScanItemLinear
, CScanItemRepeat
- isValidSId()
: CSBMLExporter
- isValidSubType()
: CLyapMethod
- isValidValue()
: CCopasiParameter
- isValidXML()
: CAnnotation
- isValue()
: CTableCell
- isValueBool()
: CCopasiObject
- isValueDbl()
: CCopasiObject
- isValueInt()
: CCopasiObject
- isValueInt64()
: CCopasiObject
- isValueString()
: CCopasiObject
- isVector()
: CCopasiObject
, CFunctionParameters
, CReactionInterface
- isWritable()
: CDirEntry
- isZero()
: CFunctionAnalyzer::CValue
- itemChange()
: CQConnectionGraphicsItem
, CQStyledGraphicsItem
- itemDeleted()
: CScanContainerWidget
- itemSelectionChanged()
: CQPlotSubwidget
- iterator()
: CCopasiTree< _Node >::iterator