COPASI API  4.16.103
Public Member Functions | Private Member Functions | Friends | List of all members
CModelValue Class Reference

#include <CModelValue.h>

Inheritance diagram for CModelValue:
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Collaboration diagram for CModelValue:
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Public Member Functions

 CModelValue (const std::string &name="NoName", const CCopasiContainer *pParent=NULL)
 
 CModelValue (const CModelValue &src, const CCopasiContainer *pParent=NULL)
 
 ~CModelValue ()
 
- Public Member Functions inherited from CModelEntity
virtual void calculate ()
 
 CModelEntity (const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl)
 
 CModelEntity (const CModelEntity &src, const CCopasiContainer *pParent=NULL)
 
virtual bool compile ()
 
virtual std::set< const
CCopasiObject * > 
getDeletedObjects () const
 
std::string getExpression () const
 
const CExpressiongetExpressionPtr () const
 
CExpressiongetExpressionPtr ()
 
std::string getInitialExpression () const
 
const CExpressiongetInitialExpressionPtr () const
 
CExpressiongetInitialExpressionPtr ()
 
const C_FLOAT64getInitialValue () const
 
CCopasiObjectgetInitialValueReference () const
 
virtual const std::string & getKey () const
 
const C_FLOAT64getRate () const
 
CCopasiObjectgetRateReference () const
 
const std::string & getSBMLId () const
 
const CModelEntity::StatusgetStatus () const
 
const C_FLOAT64getValue () const
 
virtual const CCopasiObjectgetValueObject () const
 
virtual voidgetValuePointer () const
 
CCopasiObjectgetValueReference () const
 
bool isFixed () const
 
const bool & isUsed () const
 
virtual bool mustBeDeleted (const DataObjectSet &deletedObjects) const
 
virtual void refreshInitialValue ()
 
bool setExpression (const std::string &expression)
 
bool setExpressionPtr (CExpression *pExpression)
 
bool setInitialExpression (const std::string &expression)
 
bool setInitialExpressionPtr (CExpression *pExpression)
 
virtual void setInitialValue (const C_FLOAT64 &initialValue)
 
void setInitialValuePtr (C_FLOAT64 *pInitialValue)
 
virtual bool setObjectParent (const CCopasiContainer *pParent)
 
void setRate (const C_FLOAT64 &rate)
 
void setSBMLId (const std::string &id)
 
virtual void setStatus (const CModelEntity::Status &status)
 
void setUsed (const bool &used)
 
virtual void setValue (const C_FLOAT64 &value)
 
void setValuePtr (C_FLOAT64 *pValue)
 
 ~CModelEntity ()
 
- Public Member Functions inherited from CCopasiContainer
virtual bool add (CCopasiObject *pObject, const bool &adopt=true)
 
 CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)
 
 CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)
 
virtual std::string getChildObjectUnits (const CCopasiObject *pObject) const
 
virtual const CObjectInterfacegetObject (const CCopasiObjectName &cn) const
 
virtual const objectMapgetObjects () const
 
virtual std::string getUnits () const
 
virtual bool remove (CCopasiObject *pObject)
 
virtual ~CCopasiContainer ()
 
- Public Member Functions inherited from CCopasiObject
void addDirectDependency (const CCopasiObject *pObject)
 
 CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)
 
void clearDirectDependencies ()
 
void clearRefresh ()
 
bool dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const
 
void getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const
 
virtual CCopasiObjectName getCN () const
 
virtual const DataObjectSetgetDirectDependencies (const DataObjectSet &context=DataObjectSet()) const
 
CCopasiContainergetObjectAncestor (const std::string &type) const
 
CCopasiDataModelgetObjectDataModel ()
 
const CCopasiDataModelgetObjectDataModel () const
 
virtual std::string getObjectDisplayName (bool regular=true, bool richtext=false) const
 
const std::string & getObjectName () const
 
CCopasiContainergetObjectParent () const
 
const std::string & getObjectType () const
 
virtual const
CObjectInterface::ObjectSet
getPrerequisites () const
 
virtual RefreshgetRefresh () const
 
UpdateMethodgetUpdateMethod () const
 
bool hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const
 
bool hasUpdateMethod () const
 
bool isArray () const
 
bool isContainer () const
 
bool isDataModel () const
 
bool isMatrix () const
 
bool isNameVector () const
 
bool isNonUniqueName () const
 
virtual bool isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const
 
bool isReference () const
 
bool isRoot () const
 
bool isSeparator () const
 
bool isStaticString () const
 
bool isValueBool () const
 
bool isValueDbl () const
 
bool isValueInt () const
 
bool isValueInt64 () const
 
bool isValueString () const
 
bool isVector () const
 
virtual void print (std::ostream *ostream) const
 
void removeDirectDependency (const CCopasiObject *pObject)
 
void setDirectDependencies (const DataObjectSet &directDependencies)
 
bool setObjectName (const std::string &name)
 
void setObjectValue (const C_FLOAT64 &value)
 
void setObjectValue (const C_INT32 &value)
 
void setObjectValue (const bool &value)
 
template<class CType >
void setRefresh (CType *pType, void(CType::*method)(void))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const bool &))
 
virtual ~CCopasiObject ()
 
- Public Member Functions inherited from CObjectInterface
 CObjectInterface ()
 
virtual ~CObjectInterface ()
 
- Public Member Functions inherited from CAnnotation
bool addUnsupportedAnnotation (const std::string &name, const std::string &xml)
 
 CAnnotation ()
 
 CAnnotation (const CAnnotation &src)
 
const std::string & getMiriamAnnotation () const
 
const std::string & getNotes () const
 
UnsupportedAnnotationgetUnsupportedAnnotations ()
 
const UnsupportedAnnotationgetUnsupportedAnnotations () const
 
bool operator== (const CAnnotation &rhs) const
 
bool removeUnsupportedAnnotation (const std::string &name)
 
bool replaceUnsupportedAnnotation (const std::string &name, const std::string &xml)
 
void setMiriamAnnotation (const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)
 
void setNotes (const std::string &notes)
 
virtual ~CAnnotation ()
 

Private Member Functions

void initObjects ()
 

Friends

std::ostream & operator<< (std::ostream &os, const CModelValue &d)
 

Additional Inherited Members

- Public Types inherited from CModelEntity
enum  Status {
  FIXED = 0, ASSIGNMENT, REACTIONS, ODE,
  TIME
}
 
- Public Types inherited from CCopasiContainer
typedef std::multimap
< std::string, CCopasiObject * > 
objectMap
 
- Public Types inherited from CCopasiObject
typedef std::set< const
CCopasiObject * > 
DataObjectSet
 
typedef std::vector< Refresh * > DataUpdateSequence
 
- Public Types inherited from CObjectInterface
typedef std::set< const
CObjectInterface * > 
ObjectSet
 
typedef std::vector
< CObjectInterface * > 
UpdateSequence
 
- Public Types inherited from CAnnotation
typedef std::map< std::string,
std::string > 
UnsupportedAnnotation
 
- Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * > buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())
 
static void setRenameHandler (CRenameHandler *rh)
 
- Static Public Member Functions inherited from CAnnotation
static CAnnotationcastObject (CCopasiObject *pObject)
 
static const CAnnotationcastObject (const CCopasiObject *pObject)
 
- Static Public Attributes inherited from CModelEntity
static const std::string StatusName []
 
static const char * XMLStatus []
 
- Static Public Attributes inherited from CCopasiContainer
static const std::vector
< CCopasiContainer * > 
EmptyList
 
- Protected Types inherited from CCopasiObject
enum  Flag {
  Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8,
  Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80,
  ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800,
  Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000,
  Root = 0x10000, Gui = 0x20000
}
 
- Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObjectaddMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObjectaddObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObjectaddVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
void initObjects ()
 
- Protected Member Functions inherited from CCopasiObject
 CCopasiObject ()
 
 CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)
 
- Protected Attributes inherited from CModelEntity
CExpressionmpExpression
 
CExpressionmpInitialExpression
 
C_FLOAT64mpIValue
 
CCopasiObjectReference
< C_FLOAT64 > * 
mpIValueReference
 
CModelmpModel
 
CCopasiObjectReference
< C_FLOAT64 > * 
mpRateReference
 
C_FLOAT64mpValue
 
CCopasiObjectReference
< C_FLOAT64 > * 
mpValueReference
 
C_FLOAT64 mRate
 
std::string mSBMLId
 
- Protected Attributes inherited from CCopasiContainer
objectMap mObjects
 
- Protected Attributes inherited from CAnnotation
std::string mKey
 
- Static Protected Attributes inherited from CCopasiObject
static CRenameHandlersmpRenameHandler = NULL
 

Detailed Description

CModelValue represents an entity in the model that has a value but is not a concentration (like species) or a volume (like compartments). It correspondents to global parameters in SBML

Definition at line 419 of file CModelValue.h.

Constructor & Destructor Documentation

CModelValue::CModelValue ( const std::string &  name = "NoName",
const CCopasiContainer pParent = NULL 
)

Default constructor

Parameters
conststd::string & name (default: "NoName")
constCCopasiContainer * pParent (default: NULL)

Definition at line 650 of file CModelValue.cpp.

References CONSTRUCTOR_TRACE, and initObjects().

651  :
652  CModelEntity(name, pParent, "ModelValue")
653 {
654  initObjects();
655 
657 }
void initObjects()
CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl)
Definition: CModelValue.cpp:62
#define CONSTRUCTOR_TRACE
Definition: copasi.h:202
CModelValue::CModelValue ( const CModelValue src,
const CCopasiContainer pParent = NULL 
)

Copy constructor

Parameters
constCModelValue & src
constCCopasiContainer * pParent (default: NULL)

Definition at line 659 of file CModelValue.cpp.

References CONSTRUCTOR_TRACE, and initObjects().

660  :
661  CModelEntity(src, pParent)
662 {
663  initObjects();
665 }
void initObjects()
CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl)
Definition: CModelValue.cpp:62
#define CONSTRUCTOR_TRACE
Definition: copasi.h:202
CModelValue::~CModelValue ( )

Destructor.

Definition at line 667 of file CModelValue.cpp.

References DESTRUCTOR_TRACE.

668 {
670 }
#define DESTRUCTOR_TRACE
Definition: copasi.h:206

Member Function Documentation

void CModelValue::initObjects ( )
private

Initialize the contained CCopasiObjects

Definition at line 672 of file CModelValue.cpp.

Referenced by CModelValue().

673 {}

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os,
const CModelValue d 
)
friend

insert operator

Definition at line 675 of file CModelValue.cpp.

676 {
677  os << " ++++CModelValue: " << d.getObjectName() << std::endl;
678  os << " mValue " << *d.mpValue << " mIValue " << *d.mpIValue << std::endl;
679  os << " mRate " << d.mRate << " mStatus " << d.getStatus() << std::endl;
680  os << " ----CModelValue " << std::endl;
681 
682  return os;
683 }
const std::string & getObjectName() const
C_FLOAT64 mRate
Definition: CModelValue.h:331
C_FLOAT64 * mpValue
Definition: CModelValue.h:321
C_FLOAT64 * mpIValue
Definition: CModelValue.h:326
const CModelEntity::Status & getStatus() const

The documentation for this class was generated from the following files: