CDataContainer Class Reference

#include <CDataContainer.h>

Inherits CDataObject.

Inherited by CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, CDataVector< CLGraphicalObject >, CBiologicalDescription, CChemEq, CChemEqElement, CCopasiParameter, CCopasiTask, CCreator, CDataArray, CDataModel, CDataVector< CType >, CEigen, CEvaluationTree, CEvent, CEventAssignment, CFittingPoint, CFunctionDB, CFunctionParameter, CFunctionParameters, CInfo, CLGradientBase, CLGraphicalObject, CLGroup, CLLineEnding, CLRenderInformationBase, CLStyle, CLayout, CMIRIAMInfo, CMathContainer, CMetabOld, CModelEntity, CModelParameterSet, CModification, CMoiety, CReaction, CReference, CRootContainer, CSlider, CStatistics, CUnitDefinition, and SCopasiXMLGUI.

Public Types
typedef CDataObjectMap	objectMap
Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet
enum	Flag {   Container , Vector , Matrix , NameVector ,   Reference , ValueBool , ValueInt , ValueInt64 ,   ValueDbl , NonUniqueName , StaticString , ValueString ,   Separator , DisplayName , ModelEntity , Array ,   DataModel , Root , Gui , __SIZE }
Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList
typedef std::set< const CObjectInterface * >	ObjectSet

Public Member Functions
virtual bool	add (CDataObject *pObject, const bool &adopt=true)
virtual bool	appendDeletedDependentData (CUndoData &undoData) const
virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes) override
	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)
	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const override
virtual std::string	getChildObjectUnits (const CDataObject *pObject) const
void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const
virtual size_t	getIndex (const CDataObject *pObject) const
virtual const CObjectInterface *	getObject (const CCommonName &cn) const override
virtual objectMap &	getObjects ()
virtual const objectMap &	getObjects () const
virtual const std::string	getUnits () const override
virtual const CDataObject *	getValueObject () const override
virtual CUndoObjectInterface *	insert (const CData &data) override
void	objectRenamed (CDataObject *pObject, const std::string &oldName)
virtual bool	remove (CDataObject *pObject)
virtual CData	toData () const override
virtual	~CDataContainer ()
Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)
void	addReference (const CDataContainer *pReference)
virtual void	calculateValue () override
	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)
virtual void	destruct () override
virtual CCommonName	getCN () const override
virtual const CDataObject *	getDataObject () const override
virtual const std::string &	getKey () const
CDataContainer *	getObjectAncestor (const std::string &type) const
CDataModel *	getObjectDataModel () const
virtual std::string	getObjectDisplayName () const override
const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const
const std::string &	getObjectName () const
CDataContainer *	getObjectParent () const
const std::string &	getObjectType () const
virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override
virtual const CValidity &	getValidity () const override
virtual void *	getValuePointer () const override
bool	hasFlag (const Flag &flag) const
virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override
bool	prerequisitsContains (const DataObjectSet &objects) const
virtual void	print (std::ostream *ostream) const override
void	removeIssue (const CIssue &issue)
void	removeReference (const CDataContainer *pReference)
bool	setObjectName (const std::string &name)
virtual bool	setObjectParent (const CDataContainer *pParent)
void	validityChanged (const CValidity &changedValidity) override
void	validityRemoved (const CValidity &changedValidity)
virtual	~CDataObject ()
Public Member Functions inherited from CObjectInterface
	CObjectInterface ()
	CObjectInterface (const CObjectInterface &src)
virtual	~CObjectInterface ()
Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()
	CUndoObjectInterface (const CUndoObjectInterface &src)
bool	generateUuid ()
const xg::Guid &	getUuid () const
bool	setUuid (const std::string &uuid)
bool	setUuid (const xg::Guid &uuid)
virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)
virtual	~CUndoObjectInterface ()

Static Public Member Functions
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)
static void	sanitizeObjectName (std::string &name)
Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)
static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)
Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Static Public Attributes
static const CObjectInterface::ContainerList	EmptyList

Protected Member Functions
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
	CDataContainer (const CDataContainer &src)
void	initObjects ()
Protected Member Functions inherited from CDataObject
	CDataObject ()
	CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Attributes
objectMap	mObjects
Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits
std::set< CDataContainer * >	mReferences
Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Private Member Functions
	CDataContainer ()

Member Typedef Documentation

objectMap

typedef CDataObjectMap CDataContainer::objectMap

Constructor & Destructor Documentation

CDataContainer() [1/4]

CDataContainer::CDataContainer ( )

private

Referenced by fromData().

CDataContainer() [2/4]

CDataContainer::CDataContainer ( const CDataContainer &  src )

protected

CDataContainer() [3/4]

CDataContainer::CDataContainer	(	const std::string &	name,
		const CDataContainer *	pParent = NO_PARENT,
		const std::string &	type = "CN",
		const CFlags< Flag > &	flag = CFlags< Flag >::None
	)

CDataContainer() [4/4]

CDataContainer::CDataContainer	(	const CDataContainer &	src,
		const CDataContainer *	pParent
	)

~CDataContainer()

CDataContainer::~CDataContainer ( )

virtual

References CDataObjectMap::begin(), CDataObjectMap::end(), mObjects, and CDataObject::setObjectParent().

Member Function Documentation

add()

bool CDataContainer::add ( CDataObject *  pObject, const bool &  adopt = true  )

virtual

Reimplemented in CDataVectorN< CType >, CDataVectorN< CEventAssignment >, CDataVectorN< CCopasiTask >, CDataVectorN< CLayout >, CDataVectorN< CUnitDefinition >, CDataVectorN< CPlotSpecification >, CDataVectorN< CModelParameterSet >, CDataVectorN< CEvent >, CDataVectorN< CFunction >, CDataVectorN< CModelValue >, CDataVectorN< CReportDefinition >, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, and CDataVector< CLGraphicalObject >.

References CDataObject::addReference(), CDataObject::getValidity(), CDataObjectMap::insert(), mObjects, CDataObject::setObjectParent(), and CDataObject::validityChanged().

Referenced by CDataVector< CType >::add(), CDataVectorN< CType >::add(), CCopasiParameterGroup::addParameter(), CDataObject::CDataObject(), CUndoData::change(), CModelEntity::compile(), CMetab::compile(), CCopasiSpringLayout::createLayout(), CDataModel::importSBML(), CDataModel::importSBMLFromString(), CDataVector< CType >::insert(), CCopasiParameterGroup::insert(), CMIRIAMInfo::load(), CDataModel::loadModel(), CCopasiParameterGroup::operator=(), CEvent::setDelayExpressionPtr(), CEventAssignment::setExpressionPtr(), CModelEntity::setExpressionPtr(), CReaction::setFunctionFromExpressionTree(), CModelEntity::setInitialExpressionPtr(), CModelEntity::setNoiseExpressionPtr(), CReaction::setNoiseExpressionPtr(), CEvent::setPriorityExpressionPtr(), CModelEntity::setStatus(), CEvent::setTriggerExpressionPtr(), CUnitDefinition::setup(), and SEDMLImporter::updateContent().

addMatrixReference()

template<class CType >

CDataMatrixReference< CType > * CDataContainer::addMatrixReference ( const std::string &  name, CType &  reference, const CFlags< Flag > &  flag = CFlags< Flag >::None  )

protected

Referenced by CILDMMethod::initializeParameter(), CILDMModifiedMethod::initializeParameter(), and CModel::initObjects().

addObjectReference()

template<class CType >

CDataObjectReference< CType > * CDataContainer::addObjectReference ( const std::string &  name, CType &  reference, const CFlags< Flag > &  flag = CFlags< Flag >::None  )

protected

Referenced by CCopasiParameter::createValue(), CILDMMethod::initializeParameter(), CILDMModifiedMethod::initializeParameter(), CAnalyticsTask::initObjects(), CStatistics::initObjects(), CCrossSectionTask::initObjects(), CBitPatternMethod::initObjects(), CBitPatternTreeMethod::initObjects(), CEFMAlgorithm::initObjects(), CEvaluationTree::initObjects(), CFunctionDB::initObjects(), CLyapTask::initObjects(), CChemEqElement::initObjects(), CMetab::initObjects(), CModel::initObjects(), CModelEntity::initObjects(), CMoiety::initObjects(), CReaction::initObjects(), COptMethodCoranaWalk::initObjects(), COptMethodHookeJeeves::initObjects(), COptMethodLevenbergMarquardt::initObjects(), COptMethodNelderMead::initObjects(), COptMethodNL2SOL::initObjects(), COptMethodPraxis::initObjects(), COptMethodPS::initObjects(), COptMethodSA::initObjects(), COptMethodSS::initObjects(), COptMethodSteepestDescent::initObjects(), COptMethodTruncatedNewton::initObjects(), COptPopulationMethod::initObjects(), COptProblem::initObjects(), CRandomSearch::initObjects(), CFittingPoint::initObjects(), CFitProblem::initObjects(), CEigen::initObjects(), and CCopasiTask::initObjects().

addVectorReference()

template<class CType >

CDataVectorReference< CType > * CDataContainer::addVectorReference ( const std::string &  name, CType &  reference, const CFlags< Flag > &  flag = CFlags< Flag >::None  )

protected

Referenced by CLyapTask::initObjects(), COptProblem::initObjects(), and CEigen::initObjects().

appendDeletedDependentData()

bool CDataContainer::appendDeletedDependentData ( CUndoData &  undoData ) const

virtual

Append all required dependent undo data

Parameters

CUndoData

& undoData

Returns

bool dataAppended

References CUndoData::addPreProcessData(), CModel::appendAllDependents(), CFunctionDB::appendDependentFunctions(), CUndoData::getAuthorID(), CDataModel::getModel(), CDataObject::getObjectAncestor(), CDataObject::getObjectDataModel(), and CUndoData::REMOVE.

Referenced by createUndoData().

applyData()

bool CDataContainer::applyData ( const CData &  data, CUndoData::CChangeSet &  changes  )

overridevirtual

Apply the provided data to the object

Parameters

const

CData & data

Returns

bool success

Reimplemented from CDataObject.

Reimplemented in CCopasiParameter, CModelEntity, CMetab, CUnitDefinition, CSlider, CCopasiTask, CCopasiParameterGroup, CPlotSpecification, CPlotItem, CFittingPoint, CReaction, CMoiety, CModelValue, CModelParameterSet, CModel, CMetabOld, CEvent, CEventAssignment, CCompartment, CReference, CModification, CMIRIAMInfo, CCreator, CBiologicalDescription, CLReactionGlyph, CLGeneralGlyph, CLMetabReferenceGlyph, CLReferenceGlyph, CLLocalStyle, CLLocalRenderInformation, CLLineEnding, CLGraphicalObject, CLGradientBase, CLTextGlyph, CLCompartmentGlyph, CLMetabGlyph, CLGlobalStyle, CLGlobalRenderInformation, CLayout, CFunctionParameter, CFunction, CEvaluationTree, CDataVectorN< CType >, CDataVectorN< CEventAssignment >, CDataVectorN< CCopasiTask >, CDataVectorN< CLayout >, CDataVectorN< CUnitDefinition >, CDataVectorN< CPlotSpecification >, CDataVectorN< CModelParameterSet >, CDataVectorN< CEvent >, CDataVectorN< CFunction >, CDataVectorN< CModelValue >, CDataVectorN< CReportDefinition >, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, CDataVector< CLGraphicalObject >, and CDataModel.

References CDataObject::applyData().

Referenced by CEvaluationTree::applyData(), CFunctionParameter::applyData(), CBiologicalDescription::applyData(), CCreator::applyData(), CMIRIAMInfo::applyData(), CModification::applyData(), CReference::applyData(), CEventAssignment::applyData(), CEvent::applyData(), CModelParameterSet::applyData(), CReaction::applyData(), CCopasiTask::applyData(), CUnitDefinition::applyData(), CModelEntity::applyData(), and CCopasiParameter::applyData().

createUndoData()

void CDataContainer::createUndoData ( CUndoData &  undoData, const CUndoData::Type &  type, const CData &  oldData = CData(), const CCore::Framework &  framework = CCore::Framework::ParticleNumbers  ) const

overridevirtual

Create the undo data which represents the changes recording the differences between the provided oldData and the current data.

Parameters

CUndoData	& undoData
const	CUndoData::Type & type
const	CData & oldData (default: empty data)
const	CCore::Framework & framework (default: CCore::Framework::ParticleNumbers)

Returns

CUndoData undoData

Reimplemented from CDataObject.

Reimplemented in CCopasiParameter, CModelEntity, CMetab, CUnitDefinition, CCopasiTask, CCopasiParameterGroup, CReaction, CModelValue, CModelParameterSet, CModel, CEvent, CEventAssignment, CCompartment, CReference, CModification, CMIRIAMInfo, CCreator, CBiologicalDescription, CFunction, CDataVectorN< CType >, CDataVectorN< CEventAssignment >, CDataVectorN< CCopasiTask >, CDataVectorN< CLayout >, CDataVectorN< CUnitDefinition >, CDataVectorN< CPlotSpecification >, CDataVectorN< CModelParameterSet >, CDataVectorN< CEvent >, CDataVectorN< CFunction >, CDataVectorN< CModelValue >, CDataVectorN< CReportDefinition >, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, and CDataVector< CLGraphicalObject >.

References appendDeletedDependentData(), CDataObject::createUndoData(), and CUndoData::REMOVE.

Referenced by CFunction::createUndoData(), CBiologicalDescription::createUndoData(), CCreator::createUndoData(), CMIRIAMInfo::createUndoData(), CModification::createUndoData(), CReference::createUndoData(), CEventAssignment::createUndoData(), CEvent::createUndoData(), CModelParameterSet::createUndoData(), CReaction::createUndoData(), CCopasiTask::createUndoData(), CUnitDefinition::createUndoData(), CModelEntity::createUndoData(), and CCopasiParameter::createUndoData().

fromData()

CDataContainer * CDataContainer::fromData ( const CData &  data, CUndoObjectInterface *  pParent  )

static

Static method to create a CDataObject based on the provided data

Parameters

const

CData & data

Returns

CDataContainer * pDataObject

References CDataContainer(), CData::getProperty(), NO_PARENT, CData::OBJECT_FLAG, CData::OBJECT_NAME, CData::OBJECT_TYPE, and CDataValue::toString().

getChildObjectUnits()

std::string CDataContainer::getChildObjectUnits ( const CDataObject *  pObject ) const

virtual

Retrieve the units of the child object.

Returns

std::string units

Reimplemented in CModelEntity, CMetab, CReaction, and CModel.

Referenced by CDataObject::getUnits().

getDescendants()

void CDataContainer::getDescendants	(	CDataObject::DataObjectSet &	descendants,
		const bool &	recursive = false
	)		const

Retrieve all descendant objects (optionally recursive)

Parameters

CDataObject::DataObjectSet	& descendants
const	bool & recursive (default: false)

References CDataObjectMap::begin(), CDataObjectMap::end(), getDescendants(), and mObjects.

Referenced by CModel::appendAllDependents(), CModel::appendDirectDependents(), CModelExpansion::SetOfModelElements::fillDependencies(), getDescendants(), and CMathContainer::removeDataObject().

getIndex()

size_t CDataContainer::getIndex ( const CDataObject *  pObject ) const

virtual

Reimplemented in CCopasiParameterGroup, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, and CDataVector< CLGraphicalObject >.

References C_INVALID_INDEX.

Referenced by CModel::createMetabolite(), CDataObject::createUndoData(), CDataObject::getCN(), CModelParameterSet::getIndex(), CDataVector< CType >::getIndex(), CCopasiParameterGroup::getIndex(), CModel::load(), and CDataObject::toData().

getObject()

const CObjectInterface * CDataContainer::getObject ( const CCommonName &  cn ) const

overridevirtual

Retrieve a descendant object by its CN.

Parameters

const

CCommonName & cn

Returns

const CObjectInterface * pObject

Reimplemented from CDataObject.

Reimplemented in CDataVectorN< CType >, CDataVectorN< CEventAssignment >, CDataVectorN< CCopasiTask >, CDataVectorN< CLayout >, CDataVectorN< CUnitDefinition >, CDataVectorN< CPlotSpecification >, CDataVectorN< CModelParameterSet >, CDataVectorN< CEvent >, CDataVectorN< CFunction >, CDataVectorN< CModelValue >, CDataVectorN< CReportDefinition >, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, CDataVector< CLGraphicalObject >, CCopasiParameterGroup, CReaction, CMathContainer, and CDataArray.

References CAnnotation::allocateMiriamInfo(), CDataObject::Array, CAnnotation::castObject(), CDataObject::Container, CDataObjectMap::equal_range(), CCommonName::getElementName(), CObjectInterface::getObject(), getObject(), CDataObject::getObject(), CCommonName::getObjectName(), CDataObject::getObjectName(), CCommonName::getObjectType(), CDataObject::getObjectType(), CCommonName::getRemainder(), CRootContainer::getRoot(), CDataObject::hasFlag(), CDataObject::Matrix, mObjects, and CDataObject::Root.

Referenced by CSBMLExporter::addInitialAssignmentsToModel(), CDataObject::applyData(), CSBMLExporter::checkForUnsupportedObjectReferences(), CEvaluationNodeCall::compile(), CEventAssignment::compile(), CModelAdd::copyDelayExpression(), CModelAdd::copyEventAssignmentExpression(), CModelAdd::copyExpression(), CModelAdd::copyInitialExpression(), CModelAdd::copyTriggerExpression(), SBMLImporter::createCModelFromSBMLDocument(), COutputAssistant::createDefaultOutput(), CModel::createEventsForTimeseries(), CExpression::createInitialExpression(), CModelExpansion::duplicateEvent(), CSBMLExporter::exportEventAssignments(), CSEDMLExporter::exportNthScanItem(), CDataModel::findObjectByDisplayName(), CObjectLists::getListOfConstObjects(), CMathContainer::getMathObject(), CEvaluationTree::getNodeObject(), CDataArray::getObject(), CMathContainer::getObject(), CReaction::getObject(), CCopasiParameterGroup::getObject(), getObject(), CDataVector< CType >::getObject(), CUndoData::getObject(), CFittingPoint::getObjectDisplayName(), SEDMLUtils::getObjectForSbmlId(), CObjectInterface::GetObjectFromCN(), CUndoData::getParent(), CSBMLExporter::hasVolumeAssignment(), CExpression::initObjects(), CSBMLExporter::isEventSBMLCompatible(), CEvaluationNodeObject::mapObject(), CModelMerging::mergeInExpression(), CMoietiesProblem::printResult(), CSBMLExporter::replaceSpeciesReferences(), SBMLImporter::replaceTimeAndAvogadroNodeNames(), CReaction::resolveCN(), SEDMLUtils::resolveDatagenerator(), SBMLImporter::sbmlId2CopasiCN(), CSEDMLExporter::setCurrentTime(), SBMLImporter::setInitialValues(), CDataObject::setObjectName(), and CModelExpansion::updateExpression().

getObjects() [1/2]

CDataContainer::objectMap & CDataContainer::getObjects ( )

virtual

References mObjects.

getObjects() [2/2]

const CDataContainer::objectMap & CDataContainer::getObjects ( ) const

virtual

References mObjects.

Referenced by CMetabNameInterface::doesExist(), CModel::findMetabByName(), CDataVectorN< CType >::getObject(), CUndoData::getObject(), CCopasiParameterGroup::getParameter(), CDataVectorN< CType >::isInsertAllowed(), CMetabNameInterface::isUnique(), CCopasiParameterGroup::operator=(), CDataVectorN< CType >::operator[](), and CModel::prepareElasticity().

getUnits()

const std::string CDataContainer::getUnits ( ) const

overridevirtual

Retrieve the units of the object.

Returns

std::string units

Reimplemented from CDataObject.

Reimplemented in CMetab, CModelValue, CModel, and CCompartment.

Referenced by CModelEntity::getChildObjectUnits(), CReactionInterface::getUnit(), and CReactionInterface::getUnitVector().

getValueObject()

const CDataObject * CDataContainer::getValueObject ( ) const

overridevirtual

Reimplemented from CDataObject.

Reimplemented in CModelEntity, and CMetab.

References CDataObjectMap::begin(), CDataObjectMap::end(), CDataObject::getValuePointer(), and mObjects.

Referenced by CTimeSensMethod::initializeDerivativesCalculations().

initObjects()

void CDataContainer::initObjects ( )

protected

Referenced by COptMethodStatistics::COptMethodStatistics().

insert()

CUndoObjectInterface * CDataContainer::insert ( const CData &  data )

overridevirtual

Create and insert an undo object based on the given data. This method needs to be re-implemented in container which support INSERT and REMOVE

Parameters

const

CData & data

Returns

CUndoObjectInterface * pUndoObject

Reimplemented from CUndoObjectInterface.

Reimplemented in CCopasiParameterGroup, CModelParameterSet, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, and CDataVector< CLGraphicalObject >.

Referenced by CModel::appendAllDependents(), CUnitDefinitionDB::appendDependentUnits(), CModel::appendDirectDependents(), CDataObject::applyData(), CSBMLExporter::createFunctionDefinitions(), CChemEqInterface::createNonExistingMetabs(), CReactionInterface::createOtherObjects(), CCopasiParameterGroup::createUndoData(), CODEExporterC::exportSingleFunction(), CLGeneralGlyph::exportToSBML(), CLayout::exportToSBML(), SBMLImporter::findFunctionCalls(), CSBMLExporter::findModelEntityDependencies(), CLRenderFlattener::flatten(), CObjectLists::getEventTargets(), CUndoData::insert(), CCopasiTask::isTaskValid(), CCopasiParameterGroup::operator=(), CModel::removeLocalReactionParameter(), and SBMLImporter::removeUnusedFunctions().

objectRenamed()

void CDataContainer::objectRenamed	(	CDataObject *	pObject,
		const std::string &	oldName
	)

References mObjects, and CDataObjectMap::objectRenamed().

remove()

bool CDataContainer::remove ( CDataObject *  pObject )

virtual

Removes the pointer to the object, from the vector

Parameters

CDataObject

* pObject

Returns

bool success

Reimplemented in CUnitDefinitionDB, CCopasiParameterGroup, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, and CDataVector< CLGraphicalObject >.

References CDataObjectMap::erase(), CDataObject::getValidity(), mObjects, CDataObject::removeReference(), and CDataObject::validityRemoved().

Referenced by CUndoData::change(), CDataVector< CType >::cleanup(), CDataVector< CType >::clear(), CDataModel::commonAfterLoad(), CBiologicalDescription::fromData(), CCreator::fromData(), CModification::fromData(), CReference::fromData(), CCopasiParameterGroup::remove(), CDataVector< CType >::remove(), CDataVector< CType >::resize(), CEvent::setDelayExpressionPtr(), CEventAssignment::setExpressionPtr(), CModelEntity::setExpressionPtr(), CModelEntity::setInitialExpressionPtr(), CModelEntity::setNoiseExpressionPtr(), CReaction::setNoiseExpressionPtr(), CDataObject::setObjectParent(), CEvent::setPriorityExpressionPtr(), CEvent::setTriggerExpressionPtr(), CDataObject::~CDataObject(), and CUnitDefinition::~CUnitDefinition().

toData()

CData CDataContainer::toData ( ) const

overridevirtual

Retrieve the data describing the object

Returns

CData data

Reimplemented from CDataObject.

Reimplemented in CCopasiParameter, CModelEntity, CMetab, CUnitDefinition, CSlider, CCopasiTask, CCopasiParameterGroup, CPlotSpecification, CPlotItem, CFittingPoint, CReaction, CMoiety, CModelValue, CModelParameterSet, CModel, CMetabOld, CEvent, CEventAssignment, CCompartment, CReference, CModification, CMIRIAMInfo, CCreator, CBiologicalDescription, CLReactionGlyph, CLGeneralGlyph, CLMetabReferenceGlyph, CLReferenceGlyph, CLLocalStyle, CLLocalRenderInformation, CLLineEnding, CLGraphicalObject, CLGradientBase, CLTextGlyph, CLCompartmentGlyph, CLMetabGlyph, CLGlobalStyle, CLGlobalRenderInformation, CLayout, CFunctionParameter, CFunction, CEvaluationTree, CDataVectorN< CType >, CDataVectorN< CEventAssignment >, CDataVectorN< CCopasiTask >, CDataVectorN< CLayout >, CDataVectorN< CUnitDefinition >, CDataVectorN< CPlotSpecification >, CDataVectorN< CModelParameterSet >, CDataVectorN< CEvent >, CDataVectorN< CFunction >, CDataVectorN< CModelValue >, CDataVectorN< CReportDefinition >, CDataVector< CType >, CDataVector< CLGlobalRenderInformation >, CDataVector< CModification >, CDataVector< CLMetabGlyph >, CDataVector< CLCompartmentGlyph >, CDataVector< CSlider >, CDataVector< CLReferenceGlyph >, CDataVector< CBiologicalDescription >, CDataVector< CLGlobalStyle >, CDataVector< CReference >, CDataVector< CLGradientStop >, CDataVector< CMoiety >, CDataVector< CLMetabReferenceGlyph >, CDataVector< CDataModel >, CDataVector< CChemEqElement >, CDataVector< CEvent >, CDataVector< CLReactionGlyph >, CDataVector< CLColorDefinition >, CDataVector< CMetab >, CDataVector< CLLocalRenderInformation >, CDataVector< CLGradientBase >, CDataVector< CPlotItem >, CDataVector< CDataObject >, CDataVector< CLTextGlyph >, CDataVector< CLLineEnding >, CDataVector< CFittingPoint >, CDataVector< CLLocalStyle >, CDataVector< CCreator >, CDataVector< CLGeneralGlyph >, CDataVector< CLGraphicalObject >, and CDataModel.

References CDataObject::toData().

Referenced by CEvaluationTree::toData(), CFunctionParameter::toData(), CBiologicalDescription::toData(), CCreator::toData(), CMIRIAMInfo::toData(), CModification::toData(), CReference::toData(), CEventAssignment::toData(), CEvent::toData(), CModelParameterSet::toData(), CReaction::toData(), CCopasiTask::toData(), CUnitDefinition::toData(), CModelEntity::toData(), and CCopasiParameter::toData().

Member Data Documentation

EmptyList

const CObjectInterface::ContainerList CDataContainer::EmptyList

static

Class CDataContainer

This class is the is used to group CDataObjects logically. It itself is an object. Contained objects are still globally accessible.

Copyright Stefan Hoops 2002

Referenced by COptItem::setLowerBound(), and COptItem::setUpperBound().

mObjects

objectMap CDataContainer::mObjects

protected

Referenced by add(), CDataVector< CType >::beginName(), CCopasiParameterGroup::beginName(), CDataVector< CType >::endName(), CCopasiParameterGroup::endName(), getDescendants(), CDataArray::getObject(), getObject(), getObjects(), getValueObject(), objectRenamed(), remove(), and ~CDataContainer().

---

The documentation for this class was generated from the following files:

• CDataContainer.h
• CDataContainer.cpp