COPASI API
4.16.103
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#include <CMetab.h>
Public Member Functions | |
void | cleanup () |
CMetabOld (const std::string &name="NoName", const CCopasiContainer *pParent=NULL) | |
CMetabOld (const CMetabOld &src, const CCopasiContainer *pParent=NULL) | |
C_INT32 | getIndex () const |
C_INT32 | load (CReadConfig &configbuffer) |
~CMetabOld () | |
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virtual bool | add (CCopasiObject *pObject, const bool &adopt=true) |
CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | |
CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | |
virtual std::string | getChildObjectUnits (const CCopasiObject *pObject) const |
virtual const CObjectInterface * | getObject (const CCopasiObjectName &cn) const |
virtual const objectMap & | getObjects () const |
virtual std::string | getUnits () const |
virtual const CCopasiObject * | getValueObject () const |
virtual bool | remove (CCopasiObject *pObject) |
virtual | ~CCopasiContainer () |
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void | addDirectDependency (const CCopasiObject *pObject) |
CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | |
void | clearDirectDependencies () |
void | clearRefresh () |
bool | dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const |
void | getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const |
virtual CCopasiObjectName | getCN () const |
virtual const DataObjectSet & | getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const |
virtual const std::string & | getKey () const |
CCopasiContainer * | getObjectAncestor (const std::string &type) const |
CCopasiDataModel * | getObjectDataModel () |
const CCopasiDataModel * | getObjectDataModel () const |
virtual std::string | getObjectDisplayName (bool regular=true, bool richtext=false) const |
const std::string & | getObjectName () const |
CCopasiContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const |
virtual Refresh * | getRefresh () const |
UpdateMethod * | getUpdateMethod () const |
virtual void * | getValuePointer () const |
bool | hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const |
bool | hasUpdateMethod () const |
bool | isArray () const |
bool | isContainer () const |
bool | isDataModel () const |
bool | isMatrix () const |
bool | isNameVector () const |
bool | isNonUniqueName () const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const |
bool | isReference () const |
bool | isRoot () const |
bool | isSeparator () const |
bool | isStaticString () const |
bool | isValueBool () const |
bool | isValueDbl () const |
bool | isValueInt () const |
bool | isValueInt64 () const |
bool | isValueString () const |
bool | isVector () const |
virtual bool | mustBeDeleted (const DataObjectSet &deletedObjects) const |
virtual void | print (std::ostream *ostream) const |
void | removeDirectDependency (const CCopasiObject *pObject) |
void | setDirectDependencies (const DataObjectSet &directDependencies) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CCopasiContainer *pParent) |
void | setObjectValue (const C_FLOAT64 &value) |
void | setObjectValue (const C_INT32 &value) |
void | setObjectValue (const bool &value) |
template<class CType > | |
void | setRefresh (CType *pType, void(CType::*method)(void)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const bool &)) |
virtual | ~CCopasiObject () |
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CObjectInterface () | |
virtual | ~CObjectInterface () |
Private Attributes | |
C_INT32 | mCompartment |
C_FLOAT64 | mIConc |
CMetab::Status | mStatus |
Friends | |
class | CMetab |
Additional Inherited Members | |
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typedef std::multimap < std::string, CCopasiObject * > | objectMap |
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typedef std::set< const CCopasiObject * > | DataObjectSet |
typedef std::vector< Refresh * > | DataUpdateSequence |
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typedef std::set< const CObjectInterface * > | ObjectSet |
typedef std::vector < CObjectInterface * > | UpdateSequence |
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static std::vector< Refresh * > | buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) |
static void | setRenameHandler (CRenameHandler *rh) |
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static const std::vector < CCopasiContainer * > | EmptyList |
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enum | Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 } |
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template<class CType > | |
CCopasiObject * | addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
void | initObjects () |
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CCopasiObject () | |
CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | |
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objectMap | mObjects |
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static CRenameHandler * | smpRenameHandler = NULL |
CMetabOld::CMetabOld | ( | const std::string & | name = "NoName" , |
const CCopasiContainer * | pParent = NULL |
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Default constructor
const | std::string & name (default: "NoName") |
const | CCopasiContainer * pParent (default: NULL) |
Definition at line 997 of file CMetab.cpp.
References CONSTRUCTOR_TRACE.
CMetabOld::CMetabOld | ( | const CMetabOld & | src, |
const CCopasiContainer * | pParent = NULL |
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Copy constructor
const | CMetabOld & src |
const | CCopasiContainer * pParent (default: NULL) |
Definition at line 1005 of file CMetab.cpp.
References CONSTRUCTOR_TRACE.
CMetabOld::~CMetabOld | ( | ) |
void CMetabOld::cleanup | ( | ) |
C_INT32 CMetabOld::getIndex | ( | ) | const |
C_INT32 CMetabOld::load | ( | CReadConfig & | configbuffer | ) |
Loads an object with data coming from a CReadConfig object. (CReadConfig object reads an input stream)
pconfigbuffer | reference to a CReadConfig object. |
Definition at line 1017 of file CMetab.cpp.
References C_INT32, CModelEntity::FIXED, CCopasiObject::getObjectName(), CReadConfig::getVariable(), mCompartment, METAB_MOIETY, mIConc, mStatus, CModelEntity::REACTIONS, CReadConfig::SEARCH, CCopasiObject::setObjectName(), and CCopasiMessage::WARNING.
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Index of the compartment the metabolite is located in.
Definition at line 506 of file CMetab.h.
Referenced by getIndex(), and load().
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Concentration of the metabolite.
Definition at line 495 of file CMetab.h.
Referenced by load(), and CMetab::operator=().
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Status of the metabolite. One of (METAB_FIXED, METAB_VARIABLE, METAB_DEPENDENT, METAB_MOIETY).
Definition at line 501 of file CMetab.h.
Referenced by load(), and CMetab::operator=().