CModelParameterSet Class Reference

#include <CModelParameterSet.h>

Inheritance diagram for CModelParameterSet:

Public Member Functions
virtual void	add (CModelParameter *pModelParameter)
virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)
void	assignSetContent (const CModelParameterSet &src, const bool &createMissing)
const_iterator	begin () const
	CModelParameterSet (const CModelParameterSet &src, const CDataContainer *pParent, const bool &createMissing=false)
	CModelParameterSet (const std::string &name, const CDataContainer *pParent=NO_PARENT)
bool	compareWithModel (const CCore::Framework &framework)
virtual void	compile ()
void	createFromModel ()
virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const
virtual void	destruct ()
const CompareResult &	diff (const CModelParameterSet &other, const CCore::Framework &framework, const bool &createMissing=false)
const_iterator	end () const
virtual CCommonName	getCN () const
virtual size_t	getIndex () const
virtual const std::string &	getKey () const
CModel *	getModel () const
const CModelParameter *	getModelParameter (const std::string &cn) const
virtual std::string	getName () const
virtual CUndoObjectInterface *	insert (const CData &data)
bool	isActive () const
virtual bool	refreshFromModel (const bool &modifyExistence)
bool	saveToStream (std::ostream &os, const CCore::Framework &framework, const std::string &mode, const std::string &separator)
void	setModel (const CModel *pModel)
virtual bool	setObjectParent (const CDataContainer *pParent)
virtual CData	toData () const
CModelParameterGroup *	toGroup ()
const CModelParameterGroup *	toGroup () const
virtual CModelParameterSet *	toSet ()
virtual const CModelParameterSet *	toSet () const
virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)
virtual bool	updateModel ()
virtual	~CModelParameterSet ()
Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)
virtual bool	appendDeletedDependentData (CUndoData &undoData) const
	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)
	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
virtual std::string	getChildObjectUnits (const CDataObject *pObject) const
void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const
virtual size_t	getIndex (const CDataObject *pObject) const
virtual const CObjectInterface *	getObject (const CCommonName &cn) const override
virtual objectMap &	getObjects ()
virtual const objectMap &	getObjects () const
virtual const std::string	getUnits () const override
virtual const CDataObject *	getValueObject () const override
void	objectRenamed (CDataObject *pObject, const std::string &oldName)
virtual bool	remove (CDataObject *pObject)
virtual	~CDataContainer ()
Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)
void	addReference (const CDataContainer *pReference)
virtual void	calculateValue () override
	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)
virtual const CDataObject *	getDataObject () const override
CDataContainer *	getObjectAncestor (const std::string &type) const
CDataModel *	getObjectDataModel () const
virtual std::string	getObjectDisplayName () const override
const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const
const std::string &	getObjectName () const
CDataContainer *	getObjectParent () const
const std::string &	getObjectType () const
virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override
virtual const CValidity &	getValidity () const override
virtual void *	getValuePointer () const override
bool	hasFlag (const Flag &flag) const
virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override
bool	prerequisitsContains (const DataObjectSet &objects) const
virtual void	print (std::ostream *ostream) const override
void	removeIssue (const CIssue &issue)
void	removeReference (const CDataContainer *pReference)
bool	setObjectName (const std::string &name)
void	validityChanged (const CValidity &changedValidity) override
void	validityRemoved (const CValidity &changedValidity)
virtual	~CDataObject ()
Public Member Functions inherited from CObjectInterface
	CObjectInterface ()
	CObjectInterface (const CObjectInterface &src)
virtual	~CObjectInterface ()
Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()
	CUndoObjectInterface (const CUndoObjectInterface &src)
bool	generateUuid ()
const xg::Guid &	getUuid () const
bool	setUuid (const std::string &uuid)
bool	setUuid (const xg::Guid &uuid)
virtual	~CUndoObjectInterface ()
Public Member Functions inherited from CModelParameterGroup
CModelParameter *	add (const CModelParameter::Type &type)
void	assignGroupContent (const CModelParameterGroup &src, const bool &createMissing)
iterator	begin ()
const_iterator	begin () const
void	clear ()
	CModelParameterGroup (CModelParameterGroup *pParent, const CModelParameter::Type &type=CModelParameter::Type::Group)
	CModelParameterGroup (const CModelParameterGroup &src, CModelParameterGroup *pParent, const bool &createMissing)
virtual const CompareResult &	diff (const CModelParameter &other, const CCore::Framework &framework, const bool &createMissing=false)
iterator	end ()
const_iterator	end () const
virtual const CModelParameter *	getChild (const size_t &index) const
CModelParameter *	getModelParameter (const std::string &cn) const
CModelParameter *	getModelParameter (const std::string &name, const CModelParameter::Type &type) const
virtual size_t	getNumChildren () const
const CValidatedUnit &	getObjectUnit (const CModelParameter *pModelParameter) const
void	remove (CModelParameter *pModelParameter)
void	remove (const size_t &index)
size_t	size () const
virtual	~CModelParameterGroup ()
Public Member Functions inherited from CModelParameter
	CModelParameter (CModelParameterGroup *pParent, const CModelParameter::Type &type)
	CModelParameter (const CModelParameter &src, CModelParameterGroup *pParent)
const CCommonName &	getCN () const
const CompareResult &	getCompareResult () const
std::string	getInitialExpression () const
const CExpression *	getInitialExpressionPtr () const
CModel *	getModel () const
CDataObject *	getObject () const
CModelParameterGroup *	getParent () const
CModelParameterSet *	getSet () const
const CModelEntity::Status &	getSimulationType () const
const Type &	getType () const
CValidatedUnit	getUnit (const CCore::Framework &framework) const
virtual const double &	getValue (const CCore::Framework &framework) const
bool	isInitialExpressionValid () const
bool	isReadOnly () const
bool	operator< (const CModelParameter &rhs) const
virtual void	setCN (const CCommonName &cn)
void	setCompareResult (const CompareResult &compareResult)
void	setInitialExpression (const std::string &initialExpression)
void	setParent (CModelParameterGroup *pParent)
bool	setSimulationType (const CModelEntity::Status &simulationType)
virtual void	setValue (const C_FLOAT64 &value, const CCore::Framework &framework, bool updateModelIfActive=true)
virtual	~CModelParameter ()
Public Member Functions inherited from CAnnotation
bool	addUnsupportedAnnotation (const std::string &name, const std::string &xml)
bool	applyData (const CData &data, CUndoData::CChangeSet &changes)
	CAnnotation ()
	CAnnotation (const CAnnotation &src)
void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const
const std::string &	getMiriamAnnotation () const
const std::string &	getNotes () const
UnsupportedAnnotation &	getUnsupportedAnnotations ()
const UnsupportedAnnotation &	getUnsupportedAnnotations () const
void	initMiriamAnnotation (const std::string &newId)
bool	operator== (const CAnnotation &rhs) const
bool	removeUnsupportedAnnotation (const std::string &name)
bool	replaceUnsupportedAnnotation (const std::string &name, const std::string &xml)
void	setMiriamAnnotation (const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId)
void	setNotes (const std::string &notes)
CData	toData () const
virtual	~CAnnotation ()

Static Public Member Functions
static CModelParameterSet *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)
static void	sanitizeObjectName (std::string &name)
Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)
static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)
Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)
Static Public Member Functions inherited from CModelParameter
static CModelParameter *	fromData (const CData &data, CUndoObjectInterface *pParent)
Static Public Member Functions inherited from CAnnotation
static CMIRIAMInfo *	allocateMiriamInfo (CDataContainer *pParent)
static CAnnotation *	castObject (CDataObject *pObject)
static const CAnnotation *	castObject (const CDataObject *pObject)
static void	freeMiriamInfo (CDataContainer *pParent)

Private Member Functions
void	init ()

Private Attributes
std::string	mKey
CModelParameterGroup *	mpCompartments
CModel *	mpModel
CModelParameterGroup *	mpModelValues
CModelParameterGroup *	mpReactions
CModelParameterGroup *	mpSpecies
CModelParameterGroup *	mpTimes

Additional Inherited Members
Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap
Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet
enum	Flag {   Container , Vector , Matrix , NameVector ,   Reference , ValueBool , ValueInt , ValueInt64 ,   ValueDbl , NonUniqueName , StaticString , ValueString ,   Separator , DisplayName , ModelEntity , Array ,   DataModel , Root , Gui , __SIZE }
Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList
typedef std::set< const CObjectInterface * >	ObjectSet
Public Types inherited from CModelParameterGroup
typedef std::vector< CModelParameter * >::const_iterator	const_iterator
typedef std::vector< CModelParameter * >::iterator	iterator
Public Types inherited from CModelParameter
enum class	CompareResult {   Obsolete , Missing , Modified , Conflict ,   Identical , __SIZE }
enum class	Type {   Model , Compartment , Species , ModelValue ,   ReactionParameter , Reaction , Group , Set ,   unknown , __SIZE }
Public Types inherited from CAnnotation
typedef std::map< std::string, std::string >	UnsupportedAnnotation
Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList
Static Public Attributes inherited from CModelParameter
static const CEnumAnnotation< std::string, CompareResult >	CompareResultNames
static const CEnumAnnotation< std::string, Type >	TypeNames
Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)
	CDataContainer (const CDataContainer &src)
void	initObjects ()
Protected Member Functions inherited from CDataObject
	CDataObject ()
	CDataObject (const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)
Protected Member Functions inherited from CModelParameterGroup
CModelParameter *	copy (const CModelParameter &src, const bool &createMissing)
Protected Attributes inherited from CDataContainer
objectMap	mObjects
Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits
std::set< CDataContainer * >	mReferences
Protected Attributes inherited from CObjectInterface
CValidity	mValidity
Protected Attributes inherited from CModelParameter
CRegisteredCommonName	mCN
CompareResult	mCompareResult
bool	mIsInitialExpressionValid
CExpression *	mpInitialExpression
CDataObject *	mpObject
CModelParameterGroup *	mpParent
CModelEntity::Status	mSimulationType
Type	mType
double	mValue
Protected Attributes inherited from CAnnotation
std::string	mKey

Constructor & Destructor Documentation

CModelParameterSet() [1/2]

CModelParameterSet::CModelParameterSet	(	const std::string &	name,
		const CDataContainer *	pParent = NO_PARENT
	)

Constructor

Parameters

const	std::string & name
const	CDataContainer * pParent (default: NULL)

References CModelParameterGroup::add(), CDataObject::getCN(), CModelParameter::Group, CAnnotation::initMiriamAnnotation(), mKey, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, CModelParameter::setCN(), and setObjectParent().

Referenced by fromData().

CModelParameterSet() [2/2]

CModelParameterSet::CModelParameterSet	(	const CModelParameterSet &	src,
		const CDataContainer *	pParent,
		const bool &	createMissing = false
	)

Copy constructor

Parameters

const	CModelParameterSet & src
const	CDataContainer * pParent
const	bool & createMissing (default: false)

References compile(), getCN(), CAnnotation::getMiriamAnnotation(), getModel(), CModelParameterGroup::getModelParameter(), mKey, mpCompartments, mpModel, mpModelValues, mpReactions, mpSpecies, mpTimes, CAnnotation::setMiriamAnnotation(), and setObjectParent().

~CModelParameterSet()

CModelParameterSet::~CModelParameterSet ( )

virtual

Destructor

References CRootContainer::getKeyFactory(), CModelParameter::Group, mKey, CModelParameter::mType, and CKeyFactory::remove().

Member Function Documentation

add()

void CModelParameterSet::add ( CModelParameter *  pModelParameter )

virtual

Add the given parameter to the group. Note, the parent of the parameter is not updated

Parameters

CModelParameter

* pModelParameter

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::add(), CModelParameter::getCN(), getCN(), CDataObject::getCN(), CModelParameter::getType(), CModelParameter::Group, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, and pdelete.

applyData()

bool CModelParameterSet::applyData ( const CData &  data, CUndoData::CChangeSet &  changes  )

virtual

Apply the provided data to the object

Parameters

const

CData & data

Returns

bool success

Reimplemented from CDataContainer.

References CAnnotation::applyData(), CModelParameterGroup::applyData(), and CDataContainer::applyData().

assignSetContent()

void CModelParameterSet::assignSetContent	(	const CModelParameterSet &	src,
		const bool &	createMissing
	)

Assign the content of the source set to this, i.e., copy all contained parameters and groups.

Parameters

const	CModelParameterSet & src
const	bool & createMissing

References CModelParameterGroup::assignGroupContent(), compile(), getCN(), getModelParameter(), mpCompartments, mpModelValues, mpReactions, mpSpecies, and mpTimes.

Referenced by ModelHandler::processEnd().

begin()

CModelParameterGroup::const_iterator CModelParameterSet::begin

(

)

const

Retrieve the const_iterator pointing to the first contained parameter.

Returns

const_iterator begin

References CModelParameterGroup::begin().

Referenced by CCopasiXML::saveModelParameterSets().

compareWithModel()

bool CModelParameterSet::compareWithModel

(

const CCore::Framework &

framework

)

Compare the parameter set with the assigned model

References createFromModel(), diff(), CModelParameter::Identical, and mpModel.

compile()

void CModelParameterSet::compile ( )

virtual

Compile the parameter

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::compile().

Referenced by assignSetContent(), CModelParameterSet(), createFromModel(), and updateModel().

createFromModel()

void CModelParameterSet::createFromModel

(

)

Create the parameter set from the assigned model

References CModelParameterGroup::add(), CModelEntity::ASSIGNMENT, CDataVector< CType >::begin(), C_FLOAT64, CModelParameterGroup::clear(), CModelParameter::Compartment, compile(), CDataVector< CType >::end(), CModelEntity::FIXED, CDataObject::getCN(), CModel::getCompartments(), CModel::getInitialTime(), CModelEntity::getInitialValue(), CModelEntity::getInitialValueReference(), CModel::getMetabolites(), CModel::getModelValues(), CModel::getReactions(), CFunctionParameter::getUsage(), CModelParameter::Model, CModelParameter::ModelValue, mpCompartments, mpModel, mpModelValues, mpReactions, mpSpecies, mpTimes, CFunctionParameter::PARAMETER, CCore::ParticleNumbers, CModelParameter::Reaction, CModelParameter::ReactionParameter, CModelParameter::setCN(), CModelParameter::setInitialExpression(), CModelParameter::setSimulationType(), CModelParameter::setValue(), and CModelParameter::Species.

Referenced by CModel::applyActiveParameterSet(), compareWithModel(), CModel::compile(), and CFitProblem::createParameterSet().

createUndoData()

void CModelParameterSet::createUndoData ( CUndoData &  undoData, const CUndoData::Type &  type, const CData &  oldData = CData(), const CCore::Framework &  framework = CCore::Framework::ParticleNumbers  ) const

virtual

Create the undo data which represents the changes recording the differences between the provided oldData and the current data.

Parameters

CUndoData	& undoData
const	CUndoData::Type & type
const	CData & oldData (default: empty data)
const	CCore::Framework & framework (default: CCore::Framework::ParticleNumbers)

Returns

CUndoData undoData

Reimplemented from CDataContainer.

References CAnnotation::createUndoData(), CModelParameterGroup::createUndoData(), and CDataContainer::createUndoData().

destruct()

void CModelParameterSet::destruct ( )

virtual

Destruct the object

Reimplemented from CDataObject.

diff()

const CModelParameter::CompareResult & CModelParameterSet::diff	(	const CModelParameterSet &	other,
		const CCore::Framework &	framework,
		const bool &	createMissing = false
	)

Compare the parameter to an other

Parameters

const	CModelParameterSet & other
const	CCore::Framework & framework
const	bool & createMissing = false

References CModelParameterGroup::diff().

Referenced by compareWithModel(), and CDataModel::loadModelParameterSets().

end()

CModelParameterGroup::const_iterator CModelParameterSet::end

(

)

const

Retrieve the const_iterator pointing past the last contained parameter.

Returns

const_iterator end

References CModelParameterGroup::end().

Referenced by CCopasiXML::saveModelParameterSets().

fromData()

CModelParameterSet * CModelParameterSet::fromData ( const CData &  data, CUndoObjectInterface *  pParent  )

static

Static method to create a CDataObject based on the provided data

Parameters

const

CData & data

Returns

CModelParameterSet * pDataObject

References CModelParameterSet(), CData::getProperty(), NO_PARENT, CData::OBJECT_NAME, and CDataValue::toString().

getCN()

CCommonName CModelParameterSet::getCN ( ) const

virtual

Retrieve the CN of the object

Returns

CCommonName

Reimplemented from CDataObject.

References CDataObject::getCN().

Referenced by add(), assignSetContent(), and CModelParameterSet().

getIndex()

size_t CModelParameterSet::getIndex ( ) const

virtual

Retrieve the index of the parameter in the vector of children in the parent

Returns

size_t index

Reimplemented from CModelParameter.

References C_INVALID_INDEX, CDataContainer::getIndex(), and CDataObject::getObjectParent().

getKey()

const std::string & CModelParameterSet::getKey ( ) const

virtual

Retrieve the unique key of the set.

Returns

const std::string & key

Reimplemented from CAnnotation.

References mKey.

Referenced by CModel::applyActiveParameterSet(), isActive(), ModelParameterSetHandler::processEnd(), and CCopasiXML::saveModelParameterSets().

getModel()

CModel * CModelParameterSet::getModel

(

)

const

Retrieve the model the parameter set is storing values for

Returns

CModel * pModel

References mpModel.

Referenced by CModelParameterSet(), CModelParameter::getModel(), and CModelParameterSpecies::getName().

getModelParameter()

const CModelParameter * CModelParameterSet::getModelParameter

(

const std::string &

cn

)

const

Retrieve a pointer to the parameter with the given CN

Parameters

const

std::string & cn

Returns

const CModelParameter * pModelParameter

References CModelParameterGroup::getModelParameter().

Referenced by applyValueToParameterSet(), assignSetContent(), CUndoData::getObject(), and CModelParameter::refreshFromModel().

getName()

std::string CModelParameterSet::getName ( ) const

virtual

Retrieve the name of the parameter set

Returns

std::string name

Reimplemented from CModelParameter.

References CDataObject::getObjectName().

init()

void CModelParameterSet::init ( )

private

insert()

CUndoObjectInterface * CModelParameterSet::insert ( const CData &  data )

virtual

Create and insert an undo object based on the given data. This method needs to be re-implemented in container which support INSERT and REMOVE

Parameters

const

CData & data

Returns

CUndoObjectInterface * pUndoObject

Reimplemented from CDataContainer.

References CModelParameterGroup::add(), CModelParameter::Compartment, CModelParameter::fromData(), CModelParameterGroup::getModelParameter(), CData::getProperty(), CModelParameterReactionParameter::getReactionCN(), CModelParameter::Group, CModelParameter::Model, CModelParameter::ModelValue, mpCompartments, mpModelValues, mpReactions, mpSpecies, mpTimes, CData::OBJECT_NAME, CData::OBJECT_TYPE, CModelParameter::Reaction, CModelParameter::ReactionParameter, CModelParameter::Set, CModelParameter::setCN(), CModelParameter::Species, toEnum(), CDataValue::toString(), CModelParameter::TypeNames, and CModelParameter::unknown.

Referenced by CModelParameterGroup::applyData().

isActive()

bool CModelParameterSet::isActive

(

)

const

Determine whether this is parameter set is currently active, i.e., it is synchronized with the model.

Returns

bool isActive

References CModel::getActiveModelParameterSet(), getKey(), mKey, and mpModel.

Referenced by CModelParameter::setValue(), CModelParameterCompartment::setValue(), and CModelParameterSpecies::setValue().

refreshFromModel()

bool CModelParameterSet::refreshFromModel ( const bool &  modifyExistence )

virtual

Refresh the parameter from the corresponding model object

Parameters

const

bool & modifyExistence

Reimplemented from CModelParameterGroup.

References CModelParameterGroup::refreshFromModel().

Referenced by CModel::refreshActiveParameterSet(), CDataModel::saveModel(), and CDataModel::saveModelToString().

saveToStream()

bool CModelParameterSet::saveToStream	(	std::ostream &	os,
		const CCore::Framework &	framework,
		const std::string &	mode,
		const std::string &	separator
	)

Save the parameter set to a stream

Parameters

std::ostream	& os
const	CCore::Framework & framework
const	std::string & mode (report, ini or table)
const	std::string & separator

References CNodeIteratorMode::After, CNodeIteratorMode::Before, C_FLOAT64, CCore::Concentration, CNodeContextIterator< Node, Context >::end(), CMetab::getInitialConcentrationReference(), CModelEntity::getInitialValueReference(), CDataObject::getObjectDisplayName(), CModelParameter::Group, CNodeContextIterator< Node, Context >::level(), CNodeContextIterator< Node, Context >::next(), CModelParameter::Set, and CNodeContextIterator< Node, Context >::setProcessingModes().

setModel()

void CModelParameterSet::setModel

(

const CModel *

pModel

)

Set the model the parameter set is storing values for

Parameters

const

CModel * pModel

setObjectParent()

bool CModelParameterSet::setObjectParent ( const CDataContainer *  pParent )

virtual

Set the object parent

Parameters

const

CDataContainer * pParent

Returns

bool success

Reimplemented from CDataObject.

References CDataObject::getObjectAncestor(), mpModel, and CDataObject::setObjectParent().

Referenced by CModelParameterSet().

toData()

CData CModelParameterSet::toData ( ) const

virtual

Retrieve the data describing the object

Returns

CData data

Reimplemented from CDataContainer.

References CData::appendData(), CAnnotation::toData(), CModelParameterGroup::toData(), and CDataContainer::toData().

toGroup() [1/2]

CModelParameterGroup * CModelParameterSet::toGroup

(

)

Referenced by CModelParameterSpecies::compile(), CModelParameterReactionParameter::compile(), ModelParameterSetHandler::processStart(), and CModelParameterSpecies::setValue().

toGroup() [2/2]

const CModelParameterGroup * CModelParameterSet::toGroup

(

)

const

toSet() [1/2]

CModelParameterSet * CModelParameterSet::toSet ( )

virtual

Reimplemented from CModelParameter.

toSet() [2/2]

const CModelParameterSet * CModelParameterSet::toSet ( ) const

virtual

Reimplemented from CModelParameter.

updateIndex()

void CModelParameterSet::updateIndex ( const size_t &  index, const CUndoObjectInterface *  pUndoObject  )

virtual

Update the index of a contained object This method needs to be re-implemented in container which care about the order of contained objects

Parameters

const	size_t & index
const	CUndoObjectInterface * pUndoObject

Reimplemented from CModelParameterGroup.

References CUndoObjectInterface::updateIndex().

updateModel()

bool CModelParameterSet::updateModel ( )

virtual

Update the corresponding model object with the current parameter settings

Reimplemented from CModelParameterGroup.

References compile(), mpModel, CCore::ParticleNumbers, CModel::updateInitialValues(), and CModelParameterGroup::updateModel().

Referenced by CModel::applyActiveParameterSet(), CDataModel::commonAfterLoad(), and SEDMLImporter::importModel().

Member Data Documentation

mKey

std::string CModelParameterSet::mKey

private

The unique key of the set

Referenced by CModelParameterSet(), getKey(), isActive(), and ~CModelParameterSet().

mpCompartments

CModelParameterGroup* CModelParameterSet::mpCompartments

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

mpModel

CModel* CModelParameterSet::mpModel

private

A pointer to the model the parameter set is storing values for

Referenced by CModelParameterSet(), compareWithModel(), createFromModel(), getModel(), isActive(), setObjectParent(), and updateModel().

mpModelValues

CModelParameterGroup* CModelParameterSet::mpModelValues

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

mpReactions

CModelParameterGroup* CModelParameterSet::mpReactions

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

mpSpecies

CModelParameterGroup* CModelParameterSet::mpSpecies

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

mpTimes

CModelParameterGroup* CModelParameterSet::mpTimes

private

Referenced by add(), assignSetContent(), CModelParameterSet(), createFromModel(), and insert().

---

The documentation for this class was generated from the following files:

• CModelParameterSet.h
• CModelParameterSet.cpp