- o -
- CCopasiObject()
: CCopasiObject
- CCopasiObjectName()
: CCopasiObjectName
- CCopasiObjectReference()
: CCopasiObjectReference< CType >
- CObjectInterface()
: CObjectInterface
- CODEExporter()
: CODEExporter
- CODEExporterBM()
: CODEExporterBM
- CODEExporterC()
: CODEExporterC
- CODEExporterXPPAUT()
: CODEExporterXPPAUT
- ColorDefinitionElement()
: CCopasiXMLParser::ColorDefinitionElement
- ColumnScale()
: ColumnScale
- COMBINE_CALLBACK()
: CLLayoutRenderer
- COMBINE_CALLBACK_GRADIENT()
: CLLayoutRenderer
- CommentElement()
: CCopasiXMLParser::CommentElement
- CompareDefault()
: CompareDefault< RandomAccessIterator >
- CompareDoubleWithNaN()
: CompareDoubleWithNaN
- CompartmentAlias()
: CompartmentAlias
- CompartmentAnnotation()
: CompartmentAnnotation
- CompartmentElement()
: CCopasiXMLParser::CompartmentElement
- CompartmentGlyphElement()
: CCopasiXMLParser::CompartmentGlyphElement
- CompartmentInfo()
: CompartmentInfo
- ComplexElement()
: CCopasiXMLParser::ComplexElement
- ConnectScheme()
: ConnectScheme
- ConstantElement()
: CCopasiXMLParser::ConstantElement
- ConstructNodeWidgets()
: ListViews
- ConverterASTNode()
: ConverterASTNode
- Copasi2SBMLTranslator()
: Copasi2SBMLTranslator
- COPASIElement()
: CCopasiXMLParser::COPASIElement
- CopasiPlot()
: CopasiPlot
- CopasiSlider()
: CopasiSlider
- CopasiUI3Window()
: CopasiUI3Window
- CopasiWidget()
: CopasiWidget
- COptionParser()
: copasi::COptionParser
- COptions()
: COptions
- COptionValue()
: COptions::COptionValue
- COptionValueTemplate()
: COptions::COptionValueTemplate< CType >
- COptItem()
: COptItem
- COptMethod()
: COptMethod
- COptMethodCoranaWalk()
: COptMethodCoranaWalk
- COptMethodDE()
: COptMethodDE
- COptMethodEP()
: COptMethodEP
- COptMethodEP2()
: COptMethodEP2
- COptMethodGA()
: COptMethodGA
- COptMethodGASR()
: COptMethodGASR
- COptMethodHGASA()
: COptMethodHGASA
- COptMethodHookeJeeves()
: COptMethodHookeJeeves
- COptMethodLevenbergMarquardt()
: COptMethodLevenbergMarquardt
- COptMethodNelderMead()
: COptMethodNelderMead
- COptMethodPraxis()
: COptMethodPraxis
- COptMethodPS()
: COptMethodPS
- COptMethodSA()
: COptMethodSA
- COptMethodSRES()
: COptMethodSRES
- COptMethodSS()
: COptMethodSS
- COptMethodStatistics()
: COptMethodStatistics
- COptMethodSteepestDescent()
: COptMethodSteepestDescent
- COptMethodTruncatedNewton()
: COptMethodTruncatedNewton
- COptProblem()
: COptProblem
- COptTask()
: COptTask
- COscillationMethod()
: COscillationMethod
- COscillationMethodIntegrate()
: COscillationMethodIntegrate
- COscillationProblem()
: COscillationProblem
- COscillationTask()
: COscillationTask
- COutputDefinitionVector()
: COutputDefinitionVector
- COutputHandler()
: COutputHandler
- COutputHandlerPlot()
: COutputHandlerPlot
- COutputInterface()
: COutputInterface
- object()
: CopasiSlider
- object2variable()
: CReaction
- objectBoundaries()
: CQExpressionWidget
- ObjectBrowserDialog()
: ObjectBrowserDialog
- ObjectBrowserItem()
: ObjectBrowserItem
- ObjectBrowserWidget()
: ObjectBrowserWidget
- ObjectData()
: CDotOutput::ObjectData
- ObjectElement()
: CCopasiXMLParser::ObjectElement
- ObjectFromCN()
: CCopasiDataModel
- ObjectFromName()
: CCopasiDataModel
- ObjectList()
: ObjectList
- ObjectListItem()
: ObjectListItem
- objects2variables()
: CReaction
- objectValueChanged()
: SliderSettingsDialog
- okButton_clicked()
: CCopasiSelectionDialog
- okButtonPressed()
: SliderSettingsDialog
- okClicked()
: ObjectBrowserDialog
- onCharacterData()
: CCopasiXMLParser
, CExpat
, CExpatTemplate< CType >
- onComment()
: CExpat
, CExpatTemplate< CType >
- onDefault()
: CExpat
, CExpatTemplate< CType >
- onEndCdataSection()
: CExpat
, CExpatTemplate< CType >
- onEndDoctypeDecl()
: CExpat
, CExpatTemplate< CType >
- onEndElement()
: CCopasiXMLParser
, CExpat
, CExpatTemplate< CType >
- onEndNamespaceDecl()
: CExpat
, CExpatTemplate< CType >
- onExternalEntityRef()
: CExpat
, CExpatTemplate< CType >
- onPostCreate()
: CExpatTemplate< CType >
- onProcessingInstruction()
: CExpat
, CExpatTemplate< CType >
- onSkippedEntityHandler()
: CCopasiXMLParser
, CExpat
, CExpatTemplate< CType >
- onStartCdataSection()
: CExpat
, CExpatTemplate< CType >
- onStartDoctypeDecl()
: CExpat
, CExpatTemplate< CType >
- onStartElement()
: CCopasiXMLParser
, CExpat
, CExpatTemplate< CType >
- onStartNamespaceDecl()
: CExpat
, CExpatTemplate< CType >
- onUnknownEncoding()
: CExpat
, CExpatTemplate< CType >
- onXmlDecl()
: CExpat
, CExpatTemplate< CType >
- open()
: CReport
- openExampleDir()
: CopasiFileDialog
- openInitialDocument()
: CopasiUI3Window
- operator bool()
: CRDFTriplet
- operator const C_FLOAT64 &()
: CCopasiXMLInterface::DBL
, CSparseMatrixElement
- operator const CMatrix< C_FLOAT64 >()
: CSparseMatrix
- operator int()
: CMathFlags< Enum >
- operator!=()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CEvaluationNode
, CLRelAbsVector
, CRDFPredicate
, CSensItem
- operator&()
: CMathFlags< Enum >
- operator&=()
: CZeroSet
- operator()()
: BarColor
, CFortranAccess< Matrix >
, CKeyFactory::CDecisionVector
, CLFontRendererBase
, CLImageTexturizer
, CLinkMatrixView
, CLowerTriangularView< Matrix >
, CLSimpleImageTexturizer
, CLSODA
, CLSODAR
, CMatrix< CType >
, CNormalLogical::SetOfSetsSorter< TYPE >
, CNormalLogical::SetSorter< TYPE >
, CompareDefault< RandomAccessIterator >
, CompareDoubleWithNaN
, compareGraphicalObjectsBySize
, compareItemPowers
, compareProducts
, CQFontRenderer
, CQQtImageTexturizer
, CQSideCompoundWizardPage::alphaSorter
, CSparseMatrix
, CTransposeView< Matrix >
, CUnitLowerTriangularView< Matrix >
, CUnitUpperTriangularView< Matrix >
, CUpperTriangularView< Matrix >
, CVectorCore< CType >
, Cxerrwd
, FDescent
, FDescentTemplate< CType >
, FPraxis
, FPraxisTemplate< CType >
, FSwapBase< IndexType, ReturnType >
, FSwapClass< ClassType, IndexType, ReturnType >
, FTruncatedNewton
, FTruncatedNewtonTemplate< CType >
, lessCEvaluationNodes
, PJAC
, PJACFunctor< CType >
, Refresh
, RefreshTemplate< CClass >
, SLVS
, SLVSFunctor< CType >
, SpecificUpdateMethod< CType, VType >
, UpdateMethod
- operator*()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CDimension
, CEvaluationNodeDepthFirstIterator
, CFunctionAnalyzer::CValue
, CLPoint
, CMathDependencyNodeIterator
, CNodeContextIterator< Node, Context >
- operator+()
: CCopasiTimeVariable
, CDimension
, CFunctionAnalyzer::CValue
, CLPoint
, CLRelAbsVector
- operator++()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CEvaluationNodeDepthFirstIterator
, CZeroSet::CIndex
- operator+=()
: CMath::CAllocationStack::CAllocation
- operator-()
: CCopasiTimeVariable
, CDimension
, CFunctionAnalyzer::CValue
, CLPoint
- operator->()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CEvaluationNodeDepthFirstIterator
, CMathDependencyNodeIterator
, CNodeContextIterator< Node, Context >
- operator/()
: CFunctionAnalyzer::CValue
, CLRelAbsVector
- operator<()
: CCopasiTimeVariable
, CEvaluationNode
, CFluxScore
, CLFontSpec
, CLLineSegment
, CLPoint
, CNormalCall
, CNormalChoice
, CNormalChoiceLogical
, CNormalFraction
, CNormalFunction
, CNormalGeneralPower
, CNormalItem
, CNormalItemPower
, CNormalLogical
, CNormalLogicalItem
, CNormalProduct
, CNormalSum
, CProcessQueue::CKey
, CQNewMainWindow::REACTION_SELECTION_ITEM
, CRDFPredicate
, CRDFTriplet
, CZeroSet::CIndex
- operator=()
: C2DCurveData
, CArrayAnnotation
, CBandedGraphData
, CCompressedColumnFormat::const_row_iterator
, CCompressedColumnFormat
, CCopasiDataModel::CData
, CCopasiMessage
, CCopasiParameter
, CCopasiParameterGroup
, CCopasiReportSeparator
, CCopasiRootContainer
, CCopasiStaticString
, CCopasiTimeVariable
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CCopasiVector< T >
, CCopasiVectorN< CType >
, CEvaluationNodeDepthFirstIterator
, CEvent
, CExperiment
, CExperimentObjectMap::CDataColumn
, CFunctionParameters
, CGA
, CHistoCurveData
, CLColorDefinition
, CLCompartmentGlyph
, CLEllipse
, CLGeneralGlyph
, CLGlyphWithCurve
, CLGradientBase
, CLGradientStop
, CLGraphicalObject
, CLGroup
, CLGroupAttributes
, CLImage
, CLinkMatrixView
, CLLinearGradient
, CLLineEnding
, CLMetabGlyph
, CLMetabReferenceGlyph
, CLocaleString
, CLPolygon
, CLRadialGradient
, CLReactionGlyph
, CLRectangle
, CLReferenceGlyph
, CLRelAbsVector
, CLRenderCubicBezier
, CLRenderCurve
, CLRenderInformationBase
, CLRenderPoint
, CLRenderResolver
, CLStyle
, CLText
, CLTextGlyph
, CMath::CAllocationStack::CAllocation
, CMathFlags< Enum >
, CMatrix< CType >
, CMetab
, CModel
, CNormalCall
, CNormalChoice
, CNormalChoiceLogical
, CNormalFraction
, CNormalFunction
, CNormalGeneralPower
, CNormalItem
, CNormalItemPower
, CNormalLcm
, CNormalLogical
, CNormalLogicalItem
, CNormalProduct
, CNormalSum
, CRDFNode
, CRDFObject
, CRDFPredicate
, CRDFSubject
, CReaction
, CSBMLunitInterface
, CSparseMatrix
, CSparseMatrixElement
, CState
, CStateRecord
, CStochDirectMethod::CReactionDependencies
, CTauLeapMethod::CReactionDependencies
, CTimeSeries
, CTrajAdaptiveSA::CReactionDependencies
, CTrajectoryMethodDsaLsodar::CReactionDependencies
, CVector< CType >
, CVectorCore< CType >
, CZeroSet::CIndex
- operator==()
: CAnnotation
, CDimension
, CEvaluationNode
, CEvaluationTree
, CFunction
, CFunctionAnalyzer::CValue
, CFunctionParameters
, CLCurve
, CLLineSegment
, CLPoint
, CLRelAbsVector
, CLRenderPoint
, CNormalCall
, CNormalChoice
, CNormalChoiceLogical
, CNormalFraction
, CNormalFunction
, CNormalGeneralPower
, CNormalItem
, CNormalItemPower
, CNormalLogical
, CNormalLogicalItem
, CNormalProduct
, CNormalSum
, CRDFObject
, CRDFPredicate
, CRDFSubject
, CRDFTriplet
, CSensItem
, CZeroSet
- operator>=()
: CZeroSet
- operator[]()
: CCallParameters< Type >
, CCopasiAbstractArray
, CCopasiArray
, CCopasiMatrixInterface< CMatrixType >
, CCopasiVector< T >
, CCopasiVectorInterface< VectorType >
, CCopasiVectorN< CType >
, CFortranAccess< Matrix >
, CFunctionParameters
, CIndexedPriorityQueue
, CMath::CAllocationStack
, CMath::CVariableStack
, CMatrix< CType >
, CVectorCore< CType >
- operator^()
: CFunctionAnalyzer::CValue
- operator|()
: CMathFlags< Enum >
- operator|=()
: CMathFlags< Enum >
, CZeroSet
- oppositeAxis()
: ScrollZoomer
- optimise()
: CGA
, COptMethod
, COptMethodCoranaWalk
, COptMethodDE
, COptMethodEP2
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHGASA
, COptMethodHookeJeeves
, COptMethodLevenbergMarquardt
, COptMethodNelderMead
, COptMethodPraxis
, COptMethodPS
, COptMethodSA
, COptMethodSRES
, COptMethodSS
, COptMethodStatistics
, COptMethodSteepestDescent
, COptMethodTruncatedNewton
, CRandomSearch
, CRandomSearchMaster
- option_error()
: copasi::option_error
- options()
: copasi::options
- Or()
: CFunctionAnalyzer::CValue
- order()
: CNormalTranslation
- orderFamilies()
: CQFontRenderer
- orderRules()
: CSBMLExporter
- originalValue()
: CopasiSlider
- originalValueChanged()
: SliderSettingsDialog
- origValueTextChanged()
: SliderSettingsDialog
- orthog()
: CTSSAMethod
- orthonormalize()
: CLyapWolfMethod
- orValue()
: CFunctionAnalyzer::CValue
- output()
: CCopasiTask
, CopasiPlot
, COutputHandler
, COutputInterface
, CReport
, CTimeSeries
, PlotWindow
- outputData()
: CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
- outputDebug()
: CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
- outputIncompatibilities()
: CSBMLExporter
- outputSeparatorCallback()
: CScanTask
- outputState()
: CHybridMethodODE45
- outputStatistics()
: CSBMLunitInterface