#include <CConfigurationFile.h>

Inheritance diagram for CConfigurationFile:

Collaboration diagram for CConfigurationFile:

Classes
class	CXML

Public Member Functions
	CConfigurationFile (const std::string &name="Configuration", const CCopasiContainer *pParent=NULL)

	CConfigurationFile (const CConfigurationFile &src, const CCopasiContainer *pParent=NULL)

	CConfigurationFile (const CCopasiParameterGroup &group, const CCopasiContainer *pParent=NULL)

virtual bool	elevateChildren ()

const std::string	getApplicationFont () const

CRecentFiles &	getRecentFiles ()

CMIRIAMResources &	getRecentMIRIAMResources ()

CRecentFiles &	getRecentSBMLFiles ()

CRecentFiles &	getRecentSEDMLFiles ()

const std::string	getWorkingDirectory () const

virtual bool	load ()

bool	normalizePerExperiment () const

virtual bool	save ()

void	setApplicationFont (const std::string &applicationFont)

void	setNormalizePerExperiment (bool flag)

void	setRecentMIRIAMResources (const CMIRIAMResources &miriamResources)

void	setUseAdvancedEditing (bool useAdvancedEditing)

void	setUseAdvancedSliders (bool useAdvancedSliders)

void	setUseOpenGL (bool useOpenGL)

void	setValidateUnits (bool validateUnits)

void	setWorkingDirectory (const std::string &workingDirectory)

bool	useAdvancedEditing () const

bool	useAdvancedSliders () const

bool	useOpenGL () const

bool	validateUnits () const

virtual	~CConfigurationFile ()

Public Member Functions inherited from CCopasiParameterGroup
bool	addGroup (const std::string &name)

bool	addParameter (const CCopasiParameter &parameter)

bool	addParameter (const std::string &name, const CCopasiParameter::Type type)

template<class CType >
bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value)

void	addParameter (CCopasiParameter *pParameter)

CCopasiParameterGroup *	assertGroup (const std::string &name)

template<class CType >
CCopasiParameter *	assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)

index_iterator	beginIndex () const

name_iterator	beginName () const

	CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)

	CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")

void	clear ()

index_iterator	endIndex () const

name_iterator	endName () const

CCopasiParameterGroup *	getGroup (const std::string &name)

const CCopasiParameterGroup *	getGroup (const std::string &name) const

CCopasiParameterGroup *	getGroup (const size_t &index)

const CCopasiParameterGroup *	getGroup (const size_t &index) const

size_t	getIndex (const std::string &name) const

std::string	getKey (const std::string &name) const

std::string	getKey (const size_t &index) const

virtual const std::string &	getName (const size_t &index) const

virtual const CObjectInterface *	getObject (const CCopasiObjectName &cn) const

CCopasiParameter *	getParameter (const std::string &name)

const CCopasiParameter *	getParameter (const std::string &name) const

CCopasiParameter *	getParameter (const size_t &index)

const CCopasiParameter *	getParameter (const size_t &index) const

CCopasiParameter::Type	getType (const std::string &name) const

CCopasiParameter::Type	getType (const size_t &index) const

std::string	getUniqueParameterName (const CCopasiParameter *pParameter) const

const CCopasiParameter::Value &	getValue (const std::string &name) const

const CCopasiParameter::Value &	getValue (const size_t &index) const

CCopasiParameter::Value &	getValue (const std::string &name)

CCopasiParameter::Value &	getValue (const size_t &index)

CCopasiParameterGroup &	operator= (const CCopasiParameterGroup &rhs)

virtual void	print (std::ostream *ostream) const

bool	removeParameter (const std::string &name)

bool	removeParameter (const size_t &index)

template<class CType >
bool	setValue (const std::string &name, const CType &value)

template<class CType >
bool	setValue (const size_t &index, const CType &value)

size_t	size () const

bool	swap (const size_t &iFrom, const size_t &iTo)

bool	swap (index_iterator &from, index_iterator &to)

virtual	~CCopasiParameterGroup ()

Public Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)

	CCopasiParameter (const std::string &name, const Type &type, const void pValue=NULL, const CCopasiContainer pParent=NULL, const std::string &objectType="Parameter")

virtual CCopasiObjectName	getCN () const

virtual const std::string &	getKey () const

virtual std::string	getObjectDisplayName (bool regular=true, bool richtext=false) const

const CCopasiParameter::Type &	getType () const

const Value &	getValue () const

Value &	getValue ()

virtual void *	getValuePointer () const

CCopasiObject *	getValueReference () const

bool	isValidValue (const C_FLOAT64 &value) const

bool	isValidValue (const C_INT32 &value) const

bool	isValidValue (const unsigned C_INT32 &value) const

bool	isValidValue (const bool &value) const

bool	isValidValue (const std::string &value) const

bool	isValidValue (const CCopasiObjectName &value) const

bool	isValidValue (const std::vector< CCopasiParameter * > &value) const

CCopasiParameter &	operator= (const CCopasiParameter &rhs)

template<class CType >
bool	setValue (const CType &value)

bool	setValue (const std::vector< CCopasiParameter * > &value)

virtual	~CCopasiParameter ()

Public Member Functions inherited from CCopasiContainer
virtual bool	add (CCopasiObject *pObject, const bool &adopt=true)

	CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)

	CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)

virtual std::string	getChildObjectUnits (const CCopasiObject *pObject) const

virtual const objectMap &	getObjects () const

virtual std::string	getUnits () const

virtual const CCopasiObject *	getValueObject () const

virtual bool	remove (CCopasiObject *pObject)

virtual	~CCopasiContainer ()

Public Member Functions inherited from CCopasiObject
void	addDirectDependency (const CCopasiObject *pObject)

	CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)

void	clearDirectDependencies ()

void	clearRefresh ()

bool	dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const

void	getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const

virtual const DataObjectSet &	getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const

CCopasiContainer *	getObjectAncestor (const std::string &type) const

CCopasiDataModel *	getObjectDataModel ()

const CCopasiDataModel *	getObjectDataModel () const

const std::string &	getObjectName () const

CCopasiContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const

virtual Refresh *	getRefresh () const

UpdateMethod *	getUpdateMethod () const

bool	hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const

bool	hasUpdateMethod () const

bool	isArray () const

bool	isContainer () const

bool	isDataModel () const

bool	isMatrix () const

bool	isNameVector () const

bool	isNonUniqueName () const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const

bool	isReference () const

bool	isRoot () const

bool	isSeparator () const

bool	isStaticString () const

bool	isValueBool () const

bool	isValueDbl () const

bool	isValueInt () const

bool	isValueInt64 () const

bool	isValueString () const

bool	isVector () const

virtual bool	mustBeDeleted (const DataObjectSet &deletedObjects) const

void	removeDirectDependency (const CCopasiObject *pObject)

void	setDirectDependencies (const DataObjectSet &directDependencies)

bool	setObjectName (const std::string &name)

virtual bool	setObjectParent (const CCopasiContainer *pParent)

void	setObjectValue (const C_FLOAT64 &value)

void	setObjectValue (const C_INT32 &value)

void	setObjectValue (const bool &value)

template<class CType >
void	setRefresh (CType pType, void(CType::method)(void))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const C_FLOAT64 &))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const C_INT32 &))

template<class CType >
void	setUpdateMethod (CType pType, void(CType::method)(const bool &))

virtual	~CCopasiObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

virtual	~CObjectInterface ()

Private Member Functions
void	initializeParameter ()

Private Attributes
std::string *	mpApplicationFont

bool *	mpNormalizePerExperiment

CRecentFiles *	mpRecentFiles

CMIRIAMResources *	mpRecentMIRIAMResources

CRecentFiles *	mpRecentSBMLFiles

CRecentFiles *	mpRecentSEDMLFiles

bool *	mpUseAdvancedEditing

bool *	mpUseAdvancedSliders

bool *	mpUseOpenGL

bool *	mpValidateUnits

std::string *	mpWorkingDirectory

Additional Inherited Members
Public Types inherited from CCopasiParameterGroup
typedef parameterGroup::iterator	index_iterator

typedef CCopasiContainer::objectMap::iterator	name_iterator

typedef std::vector < CCopasiParameter * >	parameterGroup

Public Types inherited from CCopasiParameter
enum	Type { DOUBLE = 0, UDOUBLE, INT, UINT, BOOL, GROUP, STRING, CN, KEY, FILE, EXPRESSION, INVALID }

Public Types inherited from CCopasiContainer
typedef std::multimap < std::string, CCopasiObject * >	objectMap

Public Types inherited from CCopasiObject
typedef std::set< const CCopasiObject * >	DataObjectSet

typedef std::vector< Refresh * >	DataUpdateSequence

Public Types inherited from CObjectInterface
typedef std::set< const CObjectInterface * >	ObjectSet

typedef std::vector < CObjectInterface * >	UpdateSequence

Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * >	buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())

static void	setRenameHandler (CRenameHandler *rh)

Static Public Attributes inherited from CCopasiParameter
static const std::string	TypeName []

static const char *	XMLType []

Static Public Attributes inherited from CCopasiContainer
static const std::vector < CCopasiContainer * >	EmptyList

Protected Types inherited from CCopasiObject
enum	Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 }

Protected Member Functions inherited from CCopasiParameterGroup
	CCopasiParameterGroup ()

Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObject *	addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

template<class CType >
CCopasiObject *	addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

template<class CType >
CCopasiObject *	addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)

void	initObjects ()

Protected Member Functions inherited from CCopasiObject
	CCopasiObject ()

	CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)

Protected Attributes inherited from CCopasiParameter
std::string	mKey

CCopasiObject *	mpValueReference

size_t	mSize

Value	mValue

Protected Attributes inherited from CCopasiContainer
objectMap	mObjects

Static Protected Attributes inherited from CCopasiObject
static CRenameHandler *	smpRenameHandler = NULL

Detailed Description

Definition at line 83 of file CConfigurationFile.h.

Constructor & Destructor Documentation

CConfigurationFile::CConfigurationFile	(	const std::string &	name = `"Configuration"`,
		const CCopasiContainer *	pParent = `NULL`
	)

Default constructor

Parameters

const	std::string & name (default: Configuration)
const	CCopasiContainer * pParent (default: NULL)

Definition at line 102 of file CConfigurationFile.cpp.

References initializeParameter().

                                                                         :
   CCopasiParameterGroup(name, pParent),
   mpRecentFiles(NULL),
   mpRecentSBMLFiles(NULL),
   mpRecentSEDMLFiles(NULL),
   mpRecentMIRIAMResources(NULL),
   mpApplicationFont(NULL),
   mpValidateUnits(NULL),
   mpUseOpenGL(NULL),
   mpUseAdvancedSliders(NULL),
   mpUseAdvancedEditing(NULL),
   mpNormalizePerExperiment(NULL),
   mpWorkingDirectory(NULL)
 {initializeParameter();}

CConfigurationFile::CConfigurationFile	(	const CConfigurationFile &	src,
		const CCopasiContainer *	pParent = `NULL`
	)

Copy constructor

Parameters

const	CConfigurationFile & src
const	CCopasiContainer * pParent (default: NULL)

Definition at line 118 of file CConfigurationFile.cpp.

References initializeParameter().

                                                                         :
   CCopasiParameterGroup(src, pParent),
   mpRecentFiles(NULL),
   mpRecentSBMLFiles(NULL),
   mpRecentSEDMLFiles(NULL),
   mpRecentMIRIAMResources(NULL),
   mpApplicationFont(NULL),
   mpValidateUnits(NULL),
   mpUseOpenGL(NULL),
   mpUseAdvancedSliders(NULL),
   mpUseAdvancedEditing(NULL),
   mpNormalizePerExperiment(NULL),
   mpWorkingDirectory(NULL)
 {initializeParameter();}

CConfigurationFile::CConfigurationFile	(	const CCopasiParameterGroup &	group,
		const CCopasiContainer *	pParent = `NULL`
	)

Specific constructor

Parameters

const	CCopasiParameterGroup & group
const	CCopasiContainer * pParent (default: NULL)

Definition at line 134 of file CConfigurationFile.cpp.

References initializeParameter().

                                                                         :
   CCopasiParameterGroup(group, pParent),
   mpRecentFiles(NULL),
   mpRecentSBMLFiles(NULL),
   mpRecentSEDMLFiles(NULL),
   mpRecentMIRIAMResources(NULL),
   mpApplicationFont(NULL),
   mpValidateUnits(NULL),
   mpUseOpenGL(NULL),
   mpUseAdvancedSliders(NULL),
   mpUseAdvancedEditing(NULL),
   mpNormalizePerExperiment(NULL),
   mpWorkingDirectory(NULL)
 {initializeParameter();}

CConfigurationFile::~CConfigurationFile ( )

virtual

Destructor

Definition at line 150 of file CConfigurationFile.cpp.

151 {}

Member Function Documentation

bool CConfigurationFile::elevateChildren ( )

virtual

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns: bool success

Reimplemented from CCopasiParameterGroup.

Definition at line 153 of file CConfigurationFile.cpp.

References CCopasiParameterGroup::getGroup(), mpRecentFiles, mpRecentMIRIAMResources, mpRecentSBMLFiles, mpRecentSEDMLFiles, and CMIRIAMResourceObject::setMIRIAMResources().

Referenced by initializeParameter().

 {
   bool success = true;
 
   mpRecentFiles =
     elevate<CRecentFiles, CCopasiParameterGroup>(getGroup("Recent Files"));
 
   if (!mpRecentFiles) success = false;
 
   mpRecentSBMLFiles =
     elevate<CRecentFiles, CCopasiParameterGroup>(getGroup("Recent SBML Files"));
 
   if (!mpRecentSBMLFiles) success = false;
 
   mpRecentSEDMLFiles =
     elevate<CRecentFiles, CCopasiParameterGroup>(getGroup("Recent SEDML Files"));
 
   if (!mpRecentSEDMLFiles) success = false;
 
   mpRecentMIRIAMResources =
     elevate<CMIRIAMResources, CCopasiParameterGroup>(getGroup("MIRIAM Resources"));
   CMIRIAMResourceObject::setMIRIAMResources(mpRecentMIRIAMResources);
 
   if (!mpRecentMIRIAMResources) success = false;
 
   return success;
 }

const std::string CConfigurationFile::getApplicationFont ( ) const

Retrieve the application font.

Returns: const std::string & applicationFont

Definition at line 273 of file CConfigurationFile.cpp.

References mpApplicationFont.

Referenced by CopasiUI3Window::setApplicationFont().

 {
   return *mpApplicationFont;
 }

CRecentFiles & CConfigurationFile::getRecentFiles ( )

Retrieve the list of recent files

Returns: CRecentFiles & recentFiles

Definition at line 257 of file CConfigurationFile.cpp.

References mpRecentFiles.

Referenced by CQPreferenceDialog::init(), DataModelGUI::loadModelFinished(), CopasiUI3Window::refreshRecentFileMenu(), DataModelGUI::saveModelFinished(), CQPreferenceDialog::slotBtnOk(), and CopasiUI3Window::slotOpenRecentFile().

258 {return *mpRecentFiles;}

CConfigurationFile::mpRecentFiles

CRecentFiles * mpRecentFiles

Definition: CConfigurationFile.h:308

CMIRIAMResources & CConfigurationFile::getRecentMIRIAMResources ( )

Retrieve the list of recent MIRIAM Resources

Returns: CMIRIAMResources & recentMIRIAMResources

Definition at line 267 of file CConfigurationFile.cpp.

References mpRecentMIRIAMResources.

Referenced by CQMiriamWidget::updateResourcesList().

268 {return *mpRecentMIRIAMResources;}

CConfigurationFile::mpRecentMIRIAMResources

CMIRIAMResources * mpRecentMIRIAMResources

Definition: CConfigurationFile.h:324

CRecentFiles & CConfigurationFile::getRecentSBMLFiles ( )

Retrieve the list of recent SBML files

Returns: CRecentFiles & recentSBMLFiles

Definition at line 260 of file CConfigurationFile.cpp.

References mpRecentSBMLFiles.

Referenced by DataModelGUI::exportSBMLFinished(), DataModelGUI::importSBMLFinished(), CQPreferenceDialog::init(), CopasiUI3Window::refreshRecentSBMLFileMenu(), CQPreferenceDialog::slotBtnOk(), and CopasiUI3Window::slotOpenRecentSBMLFile().

261 {return *mpRecentSBMLFiles;}

CConfigurationFile::mpRecentSBMLFiles

CRecentFiles * mpRecentSBMLFiles

Definition: CConfigurationFile.h:313

CRecentFiles & CConfigurationFile::getRecentSEDMLFiles ( )

Retrieve the list of recent SEDML files

Returns: CRecentFiles & recentSEDMLFiles

Definition at line 264 of file CConfigurationFile.cpp.

References mpRecentSEDMLFiles.

265 {return *mpRecentSEDMLFiles;}

CConfigurationFile::mpRecentSEDMLFiles

CRecentFiles * mpRecentSEDMLFiles

Definition: CConfigurationFile.h:319

const std::string CConfigurationFile::getWorkingDirectory ( ) const

Retrieve the web working directory

Returns: const std::string & workingDirectory

Definition at line 328 of file CConfigurationFile.cpp.

References mpWorkingDirectory.

 {
   return *mpWorkingDirectory;
 }

void CConfigurationFile::initializeParameter ( )

private

Allocates all group parameters and assures that they are properly initialized.

Definition at line 181 of file CConfigurationFile.cpp.

References CCopasiParameterGroup::assertGroup(), CCopasiParameterGroup::assertParameter(), CCopasiParameter::BOOL, elevateChildren(), CCopasiParameter::getValue(), mpApplicationFont, mpNormalizePerExperiment, mpUseAdvancedEditing, mpUseAdvancedSliders, mpUseOpenGL, mpValidateUnits, mpWorkingDirectory, CCopasiParameter::Value::pBOOL, CCopasiParameter::Value::pSTRING, and CCopasiParameter::STRING.

Referenced by CConfigurationFile(), and load().

 {
   assertGroup("Recent Files");
   assertGroup("Recent SBML Files");
   assertGroup("Recent SEDML Files");
 
   mpApplicationFont =
     assertParameter("Application Font", CCopasiParameter::STRING, std::string(""))->getValue().pSTRING;
 
   assertGroup("MIRIAM Resources");
 
   mpValidateUnits = assertParameter("Validate Units", CCopasiParameter::BOOL, false)->getValue().pBOOL;
   mpUseOpenGL = assertParameter("Use OpenGL", CCopasiParameter::BOOL, false)->getValue().pBOOL;
   mpUseAdvancedSliders = assertParameter("Use Advanced Sliders", CCopasiParameter::BOOL, true)->getValue().pBOOL;
   mpUseAdvancedEditing = assertParameter("Use Advanced Editing", CCopasiParameter::BOOL, false)->getValue().pBOOL;
   mpNormalizePerExperiment = assertParameter("Normalize Weights per Experiment", CCopasiParameter::BOOL, true)->getValue().pBOOL;
   mpWorkingDirectory = assertParameter("Working Directory", CCopasiParameter::STRING, std::string(""))->getValue().pSTRING;
 
   elevateChildren();
 }

bool CConfigurationFile::load ( )

virtual

Load the configuration file.

Returns: bool success

Definition at line 216 of file CConfigurationFile.cpp.

References CConfigurationFile::CXML::getConfiguration(), CCopasiParameterGroup::getGroup(), CMIRIAMResources::getResourceList(), COptions::getValue(), initializeParameter(), CMIRIAMResources::initializeParameter(), mpRecentMIRIAMResources, CDirEntry::Separator, and CCopasiParameterGroup::size().

 {
   std::string ConfigFile;
   COptions::getValue("ConfigFile", ConfigFile);
 
   CConfigurationFile::CXML XML;
 
   bool success = XML.CCopasiXMLInterface::load(ConfigFile, ConfigFile);
 
   if (success)
     {
       *this = XML.getConfiguration();
       initializeParameter();
     }
 
   if (mpRecentMIRIAMResources->getResourceList().size() == 0)
     {
       // We load the default MIRIAM resources, which are part of the COPASI installation.
       std::string MIRIAMResourceFile;
       COptions::getValue("DefaultConfigDir", MIRIAMResourceFile);
       MIRIAMResourceFile += CDirEntry::Separator + "MIRIAMResources.xml";
 
       CConfigurationFile::CXML XMLMIRIAMResource;
 
       if (XMLMIRIAMResource.CCopasiXMLInterface::load(MIRIAMResourceFile,
           MIRIAMResourceFile))
         {
           const CCopasiParameterGroup* group = XMLMIRIAMResource.getConfiguration().getGroup("MIRIAM Resoures");
 
           if (group == NULL) return false;
 
           *mpRecentMIRIAMResources = *group;
           mpRecentMIRIAMResources->initializeParameter();
         }
       else
         success = false;
     }
 
   return success;
 }

bool CConfigurationFile::normalizePerExperiment ( ) const

Returns: a flag on whether weights in Parameter Estimation should be normalized per experiment

Definition at line 313 of file CConfigurationFile.cpp.

References mpNormalizePerExperiment.

 {
   return *mpNormalizePerExperiment;
 }

bool CConfigurationFile::save ( )

virtual

Save the configuration file.

Returns: bool success

Definition at line 202 of file CConfigurationFile.cpp.

References COptions::getValue(), and CConfigurationFile::CXML::setConfiguration().

Referenced by CopasiUI3Window::slotUpdateMIRIAMFinished(), and CCopasiRootContainer::~CCopasiRootContainer().

 {
   std::string ConfigFile;
   COptions::getValue("ConfigFile", ConfigFile);
 
   CConfigurationFile::CXML XML;
 
   XML.setConfiguration(*this);
 
   bool success = XML.CCopasiXMLInterface::save(ConfigFile, ConfigFile);
 
   return success;
 }

void CConfigurationFile::setApplicationFont ( const std::string & applicationFont )

Set the applications font.

Parameters

const std::string & applicationFont

Definition at line 278 of file CConfigurationFile.cpp.

References mpApplicationFont.

Referenced by CopasiUI3Window::setApplicationFont(), and CopasiUI3Window::slotFontSelection().

 {
   *mpApplicationFont = applicationFont;
 }

void CConfigurationFile::setNormalizePerExperiment ( bool flag )

Set whether weights in Parameter Estimation should be normalized per experiment

Definition at line 318 of file CConfigurationFile.cpp.

References mpNormalizePerExperiment.

 {
   *mpNormalizePerExperiment = flag;
 }

void CConfigurationFile::setRecentMIRIAMResources ( const CMIRIAMResources & miriamResources )

Definition at line 270 of file CConfigurationFile.cpp.

References mpRecentMIRIAMResources.

271 {* mpRecentMIRIAMResources = miriamResources;}

CConfigurationFile::mpRecentMIRIAMResources

CMIRIAMResources * mpRecentMIRIAMResources

Definition: CConfigurationFile.h:324

void CConfigurationFile::setUseAdvancedEditing ( bool useAdvancedEditing )

Set whether the advanced expression editing (i.e manually entering copasiobjects) is to be used (true), or not

Definition at line 308 of file CConfigurationFile.cpp.

References mpUseAdvancedEditing, and useAdvancedEditing().

 {
   *mpUseAdvancedEditing = useAdvancedEditing;
 }

void CConfigurationFile::setUseAdvancedSliders ( bool useAdvancedSliders )

Set whether the sliders should react to keyboard input / mouse interaction.

Definition at line 298 of file CConfigurationFile.cpp.

References mpUseAdvancedSliders, and useAdvancedSliders().

 {
   *mpUseAdvancedSliders = useAdvancedSliders;
 }

void CConfigurationFile::setUseOpenGL ( bool useOpenGL )

Set whether the openGL based rendering is to be used (true), or the Qt based one.

Definition at line 288 of file CConfigurationFile.cpp.

References mpUseOpenGL, and useOpenGL().

 {
   *mpUseOpenGL = useOpenGL;
 }

void CConfigurationFile::setValidateUnits ( bool validateUnits )

Set whether unit validation should always be performed or not.

Parameters

bool	validateUnits

Definition at line 338 of file CConfigurationFile.cpp.

References mpValidateUnits, and validateUnits().

 {
   *mpValidateUnits = validateUnits;
 }

void CConfigurationFile::setWorkingDirectory ( const std::string & workingDirectory )

Set the working directory.

Parameters

const std::string & workingDirectory

Definition at line 333 of file CConfigurationFile.cpp.

References mpWorkingDirectory.

Referenced by CopasiFileDialog::getOpenFileName(), CopasiFileDialog::getSaveFileName(), and CopasiFileDialog::openExampleDir().

 {
   *mpWorkingDirectory = workingDirectory;
 }

bool CConfigurationFile::useAdvancedEditing ( ) const

Returns: a flag on whether to use the advanced expression editing (i.e manually entering copasiobjects)

Definition at line 303 of file CConfigurationFile.cpp.

References mpUseAdvancedEditing.

Referenced by CQExpressionWidget::getExpression(), CQExpressionWidget::keyPressEvent(), and setUseAdvancedEditing().

 {
   return *mpUseAdvancedEditing;
 }

bool CConfigurationFile::useAdvancedSliders ( ) const

Returns: a flag on whether the sliders should react to keyboard input / mouse interaction.

Definition at line 293 of file CConfigurationFile.cpp.

References mpUseAdvancedSliders.

Referenced by setUseAdvancedSliders(), and SliderDialog::sliderValueChanged().

 {
   return *mpUseAdvancedSliders;
 }

bool CConfigurationFile::useOpenGL ( ) const

Returns: a flag on whether to use the open GL based rendering, or the Qt based one

Definition at line 283 of file CConfigurationFile.cpp.

References mpUseOpenGL.

Referenced by setUseOpenGL().

 {
   return *mpUseOpenGL;
 }

bool CConfigurationFile::validateUnits ( ) const

Always perform unit validation

Returns: a flag indicating whether unit validation should always be performed

Definition at line 323 of file CConfigurationFile.cpp.

References mpValidateUnits.

Referenced by setValidateUnits().

 {
   return *mpValidateUnits;
 }

Member Data Documentation

std::string* CConfigurationFile::mpApplicationFont

private

A pointer to the application font

Definition at line 329 of file CConfigurationFile.h.

Referenced by getApplicationFont(), initializeParameter(), and setApplicationFont().

bool* CConfigurationFile::mpNormalizePerExperiment

private

A pointer indicating whether to experiments should be normalized by default

Definition at line 355 of file CConfigurationFile.h.

Referenced by initializeParameter(), normalizePerExperiment(), and setNormalizePerExperiment().

CRecentFiles* CConfigurationFile::mpRecentFiles

private

A pointer to the list of recent files

Definition at line 308 of file CConfigurationFile.h.

Referenced by elevateChildren(), and getRecentFiles().

CMIRIAMResources* CConfigurationFile::mpRecentMIRIAMResources

private

A pointer to the list of MIRIAM Resources

Definition at line 324 of file CConfigurationFile.h.

Referenced by elevateChildren(), getRecentMIRIAMResources(), load(), and setRecentMIRIAMResources().

CRecentFiles* CConfigurationFile::mpRecentSBMLFiles

private

A pointer to the list of recent files

Definition at line 313 of file CConfigurationFile.h.

Referenced by elevateChildren(), and getRecentSBMLFiles().

CRecentFiles* CConfigurationFile::mpRecentSEDMLFiles

private

A pointer to the list of recent files

Definition at line 319 of file CConfigurationFile.h.

Referenced by elevateChildren(), and getRecentSEDMLFiles().

bool* CConfigurationFile::mpUseAdvancedEditing

private

A pointer indicating whether to use the advanced editing

Definition at line 350 of file CConfigurationFile.h.

Referenced by initializeParameter(), setUseAdvancedEditing(), and useAdvancedEditing().

bool* CConfigurationFile::mpUseAdvancedSliders

private

A pointer indicating whether the sliders should react to keyboard input / mouse interaction.

Definition at line 345 of file CConfigurationFile.h.

Referenced by initializeParameter(), setUseAdvancedSliders(), and useAdvancedSliders().

bool* CConfigurationFile::mpUseOpenGL

private

A pointer indicating whether to use the OpenGL rendering, or the Qt based one

Definition at line 339 of file CConfigurationFile.h.

Referenced by initializeParameter(), setUseOpenGL(), and useOpenGL().

bool* CConfigurationFile::mpValidateUnits

private

A pointer indicating whether units will always be validated

Definition at line 334 of file CConfigurationFile.h.

Referenced by initializeParameter(), setValidateUnits(), and validateUnits().

std::string* CConfigurationFile::mpWorkingDirectory

private

A pointer to the last used working directory of the GUI.

Definition at line 360 of file CConfigurationFile.h.

Referenced by getWorkingDirectory(), initializeParameter(), and setWorkingDirectory().

The documentation for this class was generated from the following files:

Classes

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation