CFluxScore Class Reference

#include <CFluxScore.h>

Collaboration diagram for CFluxScore:

Public Member Functions
	CFluxScore ()
	CFluxScore (const std::vector< C_FLOAT64 > &fluxModes)
bool	operator< (const CFluxScore &rhs) const
	~CFluxScore ()

Private Attributes
CVector< unsigned char >	mScore

Friends
std::ostream &	operator<< (std::ostream &os, const CFluxScore &A)

Detailed Description

CFluxScore class. Used to compare flux modes

Created for Copasi by Stefan Hoops 2002-05-08 (C) Stefan Hoops 2002

Definition at line 28 of file CFluxScore.h.

Constructor & Destructor Documentation

CFluxScore::CFluxScore

(

)

Default constructor

CFluxScore class. Used to compare flux modes

Created for COPASI by Stefan Hoops 2002-05-08 (C) Stefan Hoops 2002

Definition at line 36 of file CFluxScore.cpp.

References CONSTRUCTOR_TRACE.

{CONSTRUCTOR_TRACE;}

CFluxScore::CFluxScore

(

const std::vector< C_FLOAT64 > &

fluxModes

)

Specific constructor

Parameters

const vector < C_FLOAT64 > &

fluxModes

Definition at line 38 of file CFluxScore.cpp.

References CVectorCore< CType >::array(), CONSTRUCTOR_TRACE, mScore, and CVector< CType >::resize().

{
  CONSTRUCTOR_TRACE;
  unsigned char Remainder = fluxMode.size() % (CHAR_BIT * sizeof(unsigned char));
  size_t imax = fluxMode.size() / (CHAR_BIT * sizeof(unsigned char));
  unsigned char k, kmax = CHAR_BIT * sizeof(unsigned char);

  // Size the scoring vector.
  // Note we have to allocate an extra int if Remainder != 0
  mScore.resize(imax + (Remainder ? 1 : 0));

  std::vector < C_FLOAT64 >::const_iterator itMode = fluxMode.begin();
  unsigned char * pScore = mScore.array();
  unsigned char * pScoreEnd = pScore + imax;

  // Set the bits to 1 if the corresponding fluxMode coefficient is non zero.
  for (; pScore != pScoreEnd; ++pScore)
    {
      *pScore = 0;

      for (k = kmax; k > 0; ++itMode)
        {
          k--;

          if (*itMode != 0)
            (*pScore) |= (0x01 << k);
        }
    }

  // Do the same for the remaining fluxMode coefficients.
  if (Remainder)
    {
      k = kmax;
      kmax -= Remainder;

      *pScore = 0;

      for (; k > kmax; ++itMode)
        {
          k--;

          if (*itMode != 0)
            (*pScore) |= (0x01 << k);
        }
    }
}

CFluxScore::~CFluxScore

(

)

Destructor();

Definition at line 85 of file CFluxScore.cpp.

References DESTRUCTOR_TRACE.

{DESTRUCTOR_TRACE;}

Member Function Documentation

bool CFluxScore::operator<

(

const CFluxScore &

rhs

)

const

Comparison operator deciding whether lhs has a smaller flux score than rhs

Parameters

const CFluxScore &	lhs
const CFluxScore &	rhs

Returns

"bool"

Definition at line 87 of file CFluxScore.cpp.

References CVectorCore< CType >::array(), mScore, and CVectorCore< CType >::size().

{
  const unsigned char * pScoreLhs = mScore.array();
  const unsigned char * pScoreRhs = rhs.mScore.array();
  const unsigned char * pScoreEnd = pScoreLhs + mScore.size();

  for (; pScoreLhs != pScoreEnd; ++pScoreLhs, ++pScoreRhs)
    if (*pScoreLhs != (*pScoreLhs & *pScoreRhs))
      return false;

  return true;
}

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, const CFluxScore &  A  )

friend

Definition at line 100 of file CFluxScore.cpp.

{
  const unsigned char * pScore = A.mScore.array();
  const unsigned char * pScoreEnd = pScore + A.mScore.size();
  unsigned char k, kmax = CHAR_BIT * sizeof(unsigned char);

  for (k = kmax; pScore != pScoreEnd; ++pScore)
    {
      k = kmax;

      while (k > 0)
        {
          k--;
          os << ((*pScore & (0x01 << k)) >> k);
        }
    }

  os << std::endl;

  return os;
}

Member Data Documentation

CVector< unsigned char > CFluxScore::mScore

private

The score of a flux mode

Definition at line 36 of file CFluxScore.h.

Referenced by CFluxScore(), operator<(), and operator<<().

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The documentation for this class was generated from the following files:

• CFluxScore.h
• CFluxScore.cpp