CRDFPredicate Class Reference

#include <CRDFPredicate.h>

Collaboration diagram for CRDFPredicate:

Classes
struct	sAllowedLocation

Public Types
typedef std::vector < sAllowedLocation >	AllowedLocationList
enum	ePredicateType {   copasi_encodes = 0, copasi_hasPart, copasi_hasVersion, copasi_is,   copasi_isDescribedBy, copasi_isEncodedBy, copasi_isHomologTo, copasi_isPartOf,   copasi_isVersionOf, copasi_occursIn, bqbiol_encodes, bqbiol_hasPart,   bqbiol_hasVersion, bqbiol_is, bqbiol_isDescribedBy, bqbiol_isEncodedBy,   bqbiol_isHomologTo, bqbiol_isPartOf, bqbiol_isVersionOf, bqbiol_occursIn,   bqmodel_is, bqmodel_isDescribedBy, dc_creator, dcterms_creator,   dcterms_bibliographicCitation, dcterms_created, dcterms_description, dcterms_modified,   dcterms_W3CDTF, vcard_EMAIL, vcard_Family, vcard_Given,   vcard_N, vcard_ORG, vcard_Orgname, rdf_type,   rdf_li, rdf__n, rdf_subject, rdf_predicate,   rdf_object, unknown, about, any,   end }
typedef std::vector < ePredicateType >	Path

Public Member Functions
	CRDFPredicate (const ePredicateType &type=end)
	CRDFPredicate (const std::string &uri)
	CRDFPredicate (const CRDFPredicate &src)
const ePredicateType &	getType () const
const std::string &	getURI () const
bool	operator!= (const CRDFPredicate &rhs) const
bool	operator< (const CRDFPredicate &rhs) const
CRDFPredicate	operator= (const ePredicateType &type)
bool	operator== (const CRDFPredicate &rhs) const
void	setURI (const std::string &uri)
	~CRDFPredicate ()

Static Public Member Functions
static const AllowedLocationList &	getAllowedLocationList (const ePredicateType &predicate)
static const std::string &	getDisplayName (const CRDFPredicate &predicate)
static ePredicateType	getPredicateFromDisplayName (const std::string &displayName)
static ePredicateType	getPredicateFromURI (const std::string &URI)
static size_t	getSubPathIndex (const Path &fullPath, const Path &currentPath)
static const std::string &	getURI (const CRDFPredicate &predicate)
static bool	isReadOnly (const Path &currentPath)

Static Private Member Functions
static void	createAllowedLocationsAbsolute ()
static void	createAllowedLocationsAbsolute (const ePredicateType &predicate)
static void	createAllowedLocationsRelative ()
static void	createDisplayName2Predicate ()
static void	createURI2Predicate ()
static void	initialize ()

Private Attributes
ePredicateType	mType
std::string	mURI

Static Private Attributes
static std::map< std::string, ePredicateType >	DisplayName2Predicate
static std::vector < AllowedLocationList >	Predicate2AllowedLocationsAbsolute
static std::vector < AllowedLocationList >	Predicate2AllowedLocationsRelative
static const std::string	PredicateDisplayName []
static const std::string	PredicateURI []
static std::map< std::string, ePredicateType >	URI2Predicate

Friends
std::ostream &	operator<< (std::ostream &os, const CRDFPredicate &p)

Detailed Description

Definition at line 29 of file CRDFPredicate.h.

Member Typedef Documentation

typedef std::vector< sAllowedLocation > CRDFPredicate::AllowedLocationList

Definition at line 102 of file CRDFPredicate.h.

typedef std::vector< ePredicateType > CRDFPredicate::Path

Definition at line 91 of file CRDFPredicate.h.

Member Enumeration Documentation

enum CRDFPredicate::ePredicateType

Enumerator
copasi_encodes
copasi_hasPart
copasi_hasVersion
copasi_is
copasi_isDescribedBy
copasi_isEncodedBy
copasi_isHomologTo
copasi_isPartOf
copasi_isVersionOf
copasi_occursIn
bqbiol_encodes
bqbiol_hasPart
bqbiol_hasVersion
bqbiol_is
bqbiol_isDescribedBy
bqbiol_isEncodedBy
bqbiol_isHomologTo
bqbiol_isPartOf
bqbiol_isVersionOf
bqbiol_occursIn
bqmodel_is
bqmodel_isDescribedBy
dc_creator
dcterms_creator
dcterms_bibliographicCitation
dcterms_created
dcterms_description
dcterms_modified
dcterms_W3CDTF
vcard_EMAIL
vcard_Family
vcard_Given
vcard_N
vcard_ORG
vcard_Orgname
rdf_type
rdf_li
rdf__n
rdf_subject
rdf_predicate
rdf_object
unknown
about
any
end

Definition at line 32 of file CRDFPredicate.h.

  {
    /* These are proposed to unify:
     * http://biomodels.net/biology-qualifiers/...
     * http://biomodels.net/model-qualifiers/...
     */
    copasi_encodes = 0,
    copasi_hasPart,
    copasi_hasVersion,
    copasi_is,
    copasi_isDescribedBy,
    copasi_isEncodedBy,
    copasi_isHomologTo,
    copasi_isPartOf,
    copasi_isVersionOf,
    copasi_occursIn,
    // copasi_modification,
    bqbiol_encodes,
    bqbiol_hasPart,
    bqbiol_hasVersion,
    bqbiol_is,
    bqbiol_isDescribedBy,
    bqbiol_isEncodedBy,
    bqbiol_isHomologTo,
    bqbiol_isPartOf,
    bqbiol_isVersionOf,
    bqbiol_occursIn,
    bqmodel_is,
    bqmodel_isDescribedBy,
    dc_creator,
    dcterms_creator,
    dcterms_bibliographicCitation,
    // dcterms_contributor,
    dcterms_created,
    dcterms_description,
    // dcterms_license,
    dcterms_modified,
    // dcterms_rights,
    // dcterms_rightsHolder,
    dcterms_W3CDTF,
    vcard_EMAIL,
    vcard_Family,
    vcard_Given,
    vcard_N,
    vcard_ORG,
    vcard_Orgname,
    rdf_type,
    rdf_li,
    rdf__n,
    rdf_subject,
    rdf_predicate,
    rdf_object,
    unknown,
    // For internal use
    about,
    any,
    end
  };

Constructor & Destructor Documentation

CRDFPredicate::CRDFPredicate

(

const ePredicateType &

type = end

)

Default constructor

Parameters

const

ePredicateType & type (default CRDFPredicate::end)

Definition at line 555 of file CRDFPredicate.cpp.

References initialize(), mType, mURI, and PredicateURI.

Referenced by operator=().

                                                       :
    mType(type),
    mURI()
{
  initialize();
  mURI = CRDFPredicate::PredicateURI[mType];
}

CRDFPredicate::CRDFPredicate

(

const std::string &

uri

)

Specific constructor

Parameters

const

std::string & uri

Definition at line 563 of file CRDFPredicate.cpp.

References getPredicateFromURI(), initialize(), mType, mURI, PredicateURI, and rdf_li.

                                                 :
    mType(),
    mURI(uri)
{
  initialize();
  mType = CRDFPredicate::getPredicateFromURI(mURI);

  if (mType == rdf_li)
    mURI = CRDFPredicate::PredicateURI[mType];
}

CRDFPredicate::CRDFPredicate

(

const CRDFPredicate &

src

)

Copy constructor

Parameters

const

CRDFPredicate & src

Definition at line 574 of file CRDFPredicate.cpp.

                                                     :
    mType(src.mType),
    mURI(src.mURI)
{}

CRDFPredicate::~CRDFPredicate

(

)

Destructor

Definition at line 579 of file CRDFPredicate.cpp.

{}

Member Function Documentation

void CRDFPredicate::createAllowedLocationsAbsolute ( )

staticprivate

Create the list of absolute allowed locations for each predicate

Definition at line 452 of file CRDFPredicate.cpp.

References Predicate2AllowedLocationsRelative.

Referenced by createAllowedLocationsAbsolute(), and initialize().

{
  size_t Predicate, PredicateMax = Predicate2AllowedLocationsRelative.size();

  for (Predicate = 0; Predicate < PredicateMax; Predicate++)
    createAllowedLocationsAbsolute((ePredicateType) Predicate);
}

void CRDFPredicate::createAllowedLocationsAbsolute ( const ePredicateType &  predicate )

staticprivate

Create the list of absolute allowed locations for the given predicate

Parameters

const

ePredicateType & predicate

Definition at line 461 of file CRDFPredicate.cpp.

References about, any, createAllowedLocationsAbsolute(), CRDFPredicate::sAllowedLocation::Location, CRDFPredicate::sAllowedLocation::MaxOccurance, Predicate2AllowedLocationsAbsolute, Predicate2AllowedLocationsRelative, CRDFPredicate::sAllowedLocation::ReadOnly, and CRDFPredicate::sAllowedLocation::Type.

{
  AllowedLocationList & RelativeList = Predicate2AllowedLocationsRelative[predicate];
  AllowedLocationList & AbsoluteList = Predicate2AllowedLocationsAbsolute[predicate];

  // Since we are called recursively the absolute locations might already have been build.
  if (AbsoluteList.size() > 0) return;

  sAllowedLocation Relative;

  size_t i, imax = RelativeList.size();

  for (i = 0; i < imax; i++)
    {
      sAllowedLocation & Relative = RelativeList[i];

      sAllowedLocation Absolute;
      Absolute.MaxOccurance = Relative.MaxOccurance;
      Absolute.Type = Relative.Type;

      // Debugging
      assert(Relative.Location.size() > 0);

      ePredicateType Parent = Relative.Location[0];
      size_t StartIndex = 0;

      // about is the root, i.e., the path is absolute
      if (Parent == about)
        {
          Absolute.ReadOnly = Relative.ReadOnly;
          Absolute.Location = Relative.Location;

          // Add the predicate itself.
          Absolute.Location.push_back(predicate);
          AbsoluteList.push_back(Absolute);

          continue;
        }

      if (Parent == any)
        {
          // Debugging
          assert(Relative.Location.size() > 1);
          Parent = Relative.Location[1];
          StartIndex = 1;
        }

      // Make sure that the absolute path of the parent is known
      createAllowedLocationsAbsolute(Parent);
      AllowedLocationList & ParentList = Predicate2AllowedLocationsAbsolute[Parent];

      // For each parent path append the relative path
      size_t j, jmax = ParentList.size();

      for (j = 0; j < jmax; j++)
        {
          Absolute.ReadOnly = ParentList[j].ReadOnly || Relative.ReadOnly;
          Absolute.Location = ParentList[j].Location;

          size_t k, kmax = Relative.Location.size();

          for (k = StartIndex + 1; k < kmax; k++)
            Absolute.Location.push_back(Relative.Location[k]);

          // Add the predicate itself.
          Absolute.Location.push_back(predicate);
          AbsoluteList.push_back(Absolute);
        }
    }
}

void CRDFPredicate::createAllowedLocationsRelative ( )

staticprivate

Create the list of relative allowed locations for each predicate

Definition at line 179 of file CRDFPredicate.cpp.

References about, any, CRDFObject::BLANK_NODE, bqbiol_encodes, bqbiol_hasPart, bqbiol_hasVersion, bqbiol_is, bqbiol_isDescribedBy, bqbiol_isEncodedBy, bqbiol_isHomologTo, bqbiol_isPartOf, bqbiol_isVersionOf, bqbiol_occursIn, bqmodel_is, bqmodel_isDescribedBy, C_INVALID_INDEX, copasi_encodes, copasi_hasPart, copasi_hasVersion, copasi_is, copasi_isDescribedBy, copasi_isEncodedBy, copasi_isHomologTo, copasi_isPartOf, copasi_isVersionOf, copasi_occursIn, dc_creator, dcterms_bibliographicCitation, dcterms_created, dcterms_creator, dcterms_description, dcterms_modified, dcterms_W3CDTF, CRDFObject::LITERAL, Predicate2AllowedLocationsRelative, CRDFObject::RESOURCE, vcard_EMAIL, vcard_Family, vcard_Given, vcard_N, vcard_ORG, and vcard_Orgname.

Referenced by initialize().

{
  AllowedLocationList AboutUnboundedResource;
  AboutUnboundedResource.resize(1);
  AboutUnboundedResource[0].MaxOccurance = C_INVALID_INDEX;
  AboutUnboundedResource[0].ReadOnly = false;
  AboutUnboundedResource[0].Type = CRDFObject::RESOURCE;
  AboutUnboundedResource[0].Location.resize(1);
  AboutUnboundedResource[0].Location[0] = about;

  AllowedLocationList AboutOneLiteral;
  AboutOneLiteral.resize(1);
  AboutOneLiteral[0].MaxOccurance = 1;
  AboutOneLiteral[0].ReadOnly = false;
  AboutOneLiteral[0].Type = CRDFObject::LITERAL;
  AboutOneLiteral[0].Location.resize(1);
  AboutOneLiteral[0].Location[0] = about;

  /* These are proposed to replace:
   * http://biomodels.net/biology-qualifiers/...
   * http://biomodels.net/model-qualifiers/...
   */
  // copasi_encodes:
  Predicate2AllowedLocationsRelative[copasi_encodes] = AboutUnboundedResource;

  // copasi_hasPart:
  Predicate2AllowedLocationsRelative[copasi_hasPart] = AboutUnboundedResource;

  // copasi_hasVersion:
  Predicate2AllowedLocationsRelative[copasi_hasVersion] = AboutUnboundedResource;

  // copasi_is:
  Predicate2AllowedLocationsRelative[copasi_is] = AboutUnboundedResource;

  // copasi_isDescribedBy:
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy].resize(1);
  //  *.dcterms_bibliographicCitation, *
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].MaxOccurance = C_INVALID_INDEX;
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].Type = CRDFObject::RESOURCE;
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[copasi_isDescribedBy][0].Location[1] = dcterms_bibliographicCitation;

  // copasi_isEncodedBy:
  Predicate2AllowedLocationsRelative[copasi_isEncodedBy] = AboutUnboundedResource;

  // copasi_isHomologTo:
  Predicate2AllowedLocationsRelative[copasi_isHomologTo] = AboutUnboundedResource;

  // copasi_isPartOf:
  Predicate2AllowedLocationsRelative[copasi_isPartOf] = AboutUnboundedResource;

  // copasi_isVersionOf:
  Predicate2AllowedLocationsRelative[copasi_isVersionOf] = AboutUnboundedResource;

  // copasi_occursIn:
  Predicate2AllowedLocationsRelative[copasi_occursIn] = AboutUnboundedResource;

  /*
  copasi_modification:
    about, *
   */

  // bq* is read only
  AboutUnboundedResource[0].ReadOnly = true;

  // bqbiol_encodes:
  Predicate2AllowedLocationsRelative[bqbiol_encodes] = AboutUnboundedResource;

  // bqbiol_hasPart:
  Predicate2AllowedLocationsRelative[bqbiol_hasPart] = AboutUnboundedResource;

  // bqbiol_hasVersion:
  Predicate2AllowedLocationsRelative[bqbiol_hasVersion] = AboutUnboundedResource;

  // bqbiol_is:
  Predicate2AllowedLocationsRelative[bqbiol_is] = AboutUnboundedResource;

  // bqbiol_isDescribedBy:
  Predicate2AllowedLocationsRelative[bqbiol_isDescribedBy] = AboutUnboundedResource;

  // bqbiol_isEncodedBy:
  Predicate2AllowedLocationsRelative[bqbiol_isEncodedBy] = AboutUnboundedResource;

  // bqbiol_isHomologTo:
  Predicate2AllowedLocationsRelative[bqbiol_isHomologTo] = AboutUnboundedResource;

  // bqbiol_isPartOf:
  Predicate2AllowedLocationsRelative[bqbiol_isPartOf] = AboutUnboundedResource;

  // bqbiol_isVersionOf:
  Predicate2AllowedLocationsRelative[bqbiol_isVersionOf] = AboutUnboundedResource;

  // bqbiol_occursIn:
  Predicate2AllowedLocationsRelative[bqbiol_occursIn] = AboutUnboundedResource;

  // bqmodel_is:
  Predicate2AllowedLocationsRelative[bqmodel_is] = AboutUnboundedResource;

  // bqmodel_isDescribedBy:
  Predicate2AllowedLocationsRelative[bqmodel_isDescribedBy] = AboutUnboundedResource;

  // dc_creator:
  Predicate2AllowedLocationsRelative[dc_creator] = AboutUnboundedResource;
  Predicate2AllowedLocationsRelative[dc_creator][0].Type = CRDFObject::BLANK_NODE;

  // change back to writable
  AboutUnboundedResource[0].ReadOnly = false;

  // dcterms_creator:
  Predicate2AllowedLocationsRelative[dcterms_creator] = AboutUnboundedResource;
  Predicate2AllowedLocationsRelative[dcterms_creator][0].Type = CRDFObject::BLANK_NODE;

  // dcterms_bibliographicCitation:
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation].resize(1);
  // about, *
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][0].MaxOccurance = C_INVALID_INDEX;
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][0].Type = CRDFObject::BLANK_NODE;
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][0].Location.resize(1);
  Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][0].Location[0] = about;
  // *.copasi_modification, *
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].MaxOccurance = C_INVALID_INDEX;
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].ReadOnly = false;
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].Type = CRDFObject::BLANK_NODE;
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].Location.resize(2);
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].Location[0] = any;
  // Predicate2AllowedLocationsRelative[dcterms_bibliographicCitation][1].Location[1] = copasi_modification;

  // dcterms_contributor:
  // Predicate2AllowedLocationsRelative[dcterms_modified].resize(1);
  // *.copasi_modification, *
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].MaxOccurance = C_INVALID_INDEX;
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].ReadOnly = false;
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].Type = CRDFObject::BLANK_NODE;
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].Location.resize(2);
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].Location[0] = any;
  // Predicate2AllowedLocationsRelative[dcterms_modified][0].Location[1] = copasi_modification;

  // dcterms_created:
  Predicate2AllowedLocationsRelative[dcterms_created].resize(1);
  // about, 1
  Predicate2AllowedLocationsRelative[dcterms_created][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[dcterms_created][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_created][0].Type = CRDFObject::BLANK_NODE;
  Predicate2AllowedLocationsRelative[dcterms_created][0].Location.resize(1);
  Predicate2AllowedLocationsRelative[dcterms_created][0].Location[0] = about;

  // dcterms_description
  Predicate2AllowedLocationsRelative[dcterms_description].resize(1);
  // bibliographicCitation, 1
  Predicate2AllowedLocationsRelative[dcterms_description][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[dcterms_description][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_description][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[dcterms_description][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[dcterms_description][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[dcterms_description][0].Location[1] = dcterms_bibliographicCitation;

  // dcterms_license:
  // Predicate2AllowedLocationsRelative[dcterms_license] = AboutOneLiteral;

  // dcterms_modified:
  Predicate2AllowedLocationsRelative[dcterms_modified].resize(1);
  // about, *
  Predicate2AllowedLocationsRelative[dcterms_modified][0].MaxOccurance = C_INVALID_INDEX;
  Predicate2AllowedLocationsRelative[dcterms_modified][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_modified][0].Type = CRDFObject::BLANK_NODE;
  Predicate2AllowedLocationsRelative[dcterms_modified][0].Location.resize(1);
  Predicate2AllowedLocationsRelative[dcterms_modified][0].Location[0] = about;

  // *.copasi_modification, *
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].MaxOccurance = C_INVALID_INDEX;
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].ReadOnly = false;
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].Type = CRDFObject::BLANK_NODE;
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].Location.resize(2);
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].Location[0] = any;
  // Predicate2AllowedLocationsRelative[dcterms_modified][1].Location[1] = copasi_modification;

  // dcterms_rights:
  // Predicate2AllowedLocationsRelative[dcterms_rights] = AboutOneLiteral;

  // dcterms_rightsHolder:
  // Predicate2AllowedLocationsRelative[dcterms_rights] = AboutOneLiteral;

  // dcterms_W3CDTF:
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF].resize(2);
  // *.dcterms_created, 1
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][0].Location[1] = dcterms_created;
  // *.dcterms_modified, 1
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].ReadOnly = false;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].Location.resize(2);
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].Location[0] = any;
  Predicate2AllowedLocationsRelative[dcterms_W3CDTF][1].Location[1] = dcterms_modified;

  AllowedLocationList VCardOneBlankNode;
  VCardOneBlankNode.resize(2);
  // *.dcterms_creator, 1
  VCardOneBlankNode[0].MaxOccurance = 1;
  VCardOneBlankNode[0].ReadOnly = false;
  VCardOneBlankNode[0].Type = CRDFObject::BLANK_NODE;
  VCardOneBlankNode[0].Location.resize(2);
  VCardOneBlankNode[0].Location[0] = any;
  VCardOneBlankNode[0].Location[1] = dcterms_creator;
  // *.dc_creator, 1
  VCardOneBlankNode[1].MaxOccurance = 1;
  VCardOneBlankNode[1].ReadOnly = true;
  VCardOneBlankNode[1].Type = CRDFObject::BLANK_NODE;
  VCardOneBlankNode[1].Location.resize(2);
  VCardOneBlankNode[1].Location[0] = any;
  VCardOneBlankNode[1].Location[1] = dc_creator;
  // *.dcterms_contributor, 1
  // VCardOneBlankNode[1].MaxOccurance = 1;
  // VCardOneBlankNode[1].ReadOnly = false;
  // VCardOneBlankNode[1].Type = CRDFObject::BLANK_NODE;
  // VCardOneBlankNode[1].Location.resize(2);
  // VCardOneBlankNode[1].Location[0] = any;
  // VCardOneBlankNode[1].Location[1] = dcterms_contributor;

  // vcard_EMAIL:
  Predicate2AllowedLocationsRelative[vcard_EMAIL] = VCardOneBlankNode;
  // Override the default for vcard which is literal = true;
  Predicate2AllowedLocationsRelative[vcard_EMAIL][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[vcard_EMAIL][1].Type = CRDFObject::LITERAL;

  // vcard_Family:
  Predicate2AllowedLocationsRelative[vcard_Family].resize(1);
  // *.vcard_N, 1
  Predicate2AllowedLocationsRelative[vcard_Family][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[vcard_Family][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[vcard_Family][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[vcard_Family][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[vcard_Family][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[vcard_Family][0].Location[1] = vcard_N;

  // vcard_Given:
  Predicate2AllowedLocationsRelative[vcard_Given].resize(1);
  // *.vcard_N, 1
  Predicate2AllowedLocationsRelative[vcard_Given][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[vcard_Given][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[vcard_Given][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[vcard_Given][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[vcard_Given][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[vcard_Given][0].Location[1] = vcard_N;

  // vcard_N:
  Predicate2AllowedLocationsRelative[vcard_N] = VCardOneBlankNode;

  // vcard_ORG:
  Predicate2AllowedLocationsRelative[vcard_ORG] = VCardOneBlankNode;

  // vcard_Orgname:
  Predicate2AllowedLocationsRelative[vcard_Orgname].resize(1);
  // *.vcard_ORG, 1
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].MaxOccurance = 1;
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].ReadOnly = false;
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].Type = CRDFObject::LITERAL;
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].Location.resize(2);
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].Location[0] = any;
  Predicate2AllowedLocationsRelative[vcard_Orgname][0].Location[1] = vcard_ORG;
}

void CRDFPredicate::createDisplayName2Predicate ( )

staticprivate

Initialize the map from display name to predicate

Definition at line 165 of file CRDFPredicate.cpp.

References DisplayName2Predicate, and PredicateDisplayName.

Referenced by initialize().

{
  int Predicate = 0;

  for (; PredicateDisplayName[Predicate] != "end"; Predicate++)
    DisplayName2Predicate.insert(std::map< std::string, ePredicateType >::value_type(PredicateDisplayName[Predicate], (ePredicateType) Predicate));

  DisplayName2Predicate.insert(std::map< std::string, ePredicateType >::value_type(PredicateDisplayName[Predicate], (ePredicateType) Predicate));
}

void CRDFPredicate::createURI2Predicate ( )

staticprivate

Initialize the map from URI to predicate

Definition at line 87 of file CRDFPredicate.cpp.

References Predicate2AllowedLocationsAbsolute, Predicate2AllowedLocationsRelative, PredicateURI, and URI2Predicate.

Referenced by initialize().

{
  int Predicate = 0;

  for (; PredicateURI[Predicate] != "end"; Predicate++)
    URI2Predicate[PredicateURI[Predicate]] = (ePredicateType) Predicate;

  URI2Predicate[PredicateURI[Predicate]] = (ePredicateType) Predicate;

  // Now we now the number of supported predicates.
  Predicate2AllowedLocationsRelative.resize(URI2Predicate.size());
  Predicate2AllowedLocationsAbsolute.resize(URI2Predicate.size());
}

const CRDFPredicate::AllowedLocationList & CRDFPredicate::getAllowedLocationList ( const ePredicateType &  predicate )

static

Retrieve the list of allowed locations in the RDF graph for the given predicate

Parameters

const

ePredicateType & predicate

Returns

const AllowedLocationList & listOfAllowedLocations

Definition at line 618 of file CRDFPredicate.cpp.

References Predicate2AllowedLocationsAbsolute.

Referenced by CRDFGraphConverter::convert(), and CRDFNode::createMissingAncestors().

{
  return Predicate2AllowedLocationsAbsolute[predicate];
}

const std::string & CRDFPredicate::getDisplayName ( const CRDFPredicate &  predicate )

static

Retrieve the display name for the given predicate

Parameters

const

CRDFPredicate & predicate

Returns

const std::string & displayName

Definition at line 644 of file CRDFPredicate.cpp.

References mType, and PredicateDisplayName.

Referenced by CQMiriamWidget::CQMiriamWidget(), and CBiologicalDescription::getPredicate().

{
  return PredicateDisplayName[predicate.mType];
}

CRDFPredicate::ePredicateType CRDFPredicate::getPredicateFromDisplayName ( const std::string &  displayName )

static

Retrieve the type of predicate from the given display name

Parameters

const

std::string & displayName

Returns

ePredicateType type

Definition at line 650 of file CRDFPredicate.cpp.

References DisplayName2Predicate, and unknown.

Referenced by CBiologicalDescription::setPredicate().

{
  std::map< std::string, ePredicateType >::iterator it = DisplayName2Predicate.find(displayName);

  if (it != DisplayName2Predicate.end())
    return it->second;
  else
    return unknown;
}

CRDFPredicate::ePredicateType CRDFPredicate::getPredicateFromURI ( const std::string &  URI )

static

Retrieve the type of predicate for the given URI

Parameters

const

std::string & URI

Returns

ePredicateType type

Definition at line 630 of file CRDFPredicate.cpp.

References if(), PredicateURI, rdf__n, rdf_li, unknown, and URI2Predicate.

Referenced by CRDFPredicate(), and setURI().

{
  std::map< std::string, ePredicateType >::iterator it = URI2Predicate.find(URI);

  if (it != URI2Predicate.end())
    return it->second;
  // Handle rdf:_n and map it to rdf:li
  else if (URI.compare(0, PredicateURI[rdf__n].length(), PredicateURI[rdf__n]) == 0)
    return rdf_li;
  else
    return unknown;
}

size_t CRDFPredicate::getSubPathIndex ( const Path &  fullPath, const Path &  currentPath  )

static

Retrieve the index of the next path element of the full path beyond the current path. If the current path is not part of the full path C_INVALID_INDEX is returned

Parameters

const	Path & fullPath
const	Path & currentPath

Returns

size_t index

Definition at line 661 of file CRDFPredicate.cpp.

References C_INVALID_INDEX.

Referenced by CRDFGraphConverter::convert(), and CRDFNode::createMissingAncestors().

{
  // If the current path is longer than the full path we fail
  if (currentPath.size() > fullPath.size())
    return C_INVALID_INDEX;

  // Check whether the current path is part of the full path;
  Path::const_iterator itCurrent = currentPath.begin();
  Path::const_iterator endCurrent = currentPath.end();
  Path::const_iterator itFull = fullPath.begin();

  for (; itCurrent != endCurrent; ++itCurrent, ++itFull)
    if (*itCurrent != *itFull)
      return C_INVALID_INDEX;

  return currentPath.size();
}

const CRDFPredicate::ePredicateType & CRDFPredicate::getType

(

)

const

Retrieve the type og the predicate.

Returns

const ePredicateType & type

Definition at line 585 of file CRDFPredicate.cpp.

References mType.

Referenced by CSBMLExporter::updateMIRIAMAnnotation().

{return mType;}

const std::string & CRDFPredicate::getURI

(

)

const

Retrieve the URI.

Returns

const std::string & URI

Definition at line 598 of file CRDFPredicate.cpp.

References mURI.

Referenced by CBiologicalDescription::clearInvalidEntries(), CRDFGraphConverter::convert(), CMIRIAMInfo::createCreator(), CRDFNode::createMissingAncestors(), CMIRIAMInfo::createModification(), CMIRIAMInfo::createReference(), operator<<(), CMIRIAMInfo::removeCreator(), CMIRIAMInfo::removeModification(), CMIRIAMInfo::removeReference(), CMIRIAMInfo::setCreatedDT(), CRDFNode::setFieldValue(), and CQRDFTreeViewItem::setTriplet().

{return mURI;}

const std::string & CRDFPredicate::getURI ( const CRDFPredicate &  predicate )

static

Retrieve the URI for the given predicate

Parameters

const

CRDFPredicate & predicate

Returns

const std::string & uri

Definition at line 624 of file CRDFPredicate.cpp.

References mType, and PredicateURI.

{
  return PredicateURI[predicate.mType];
}

void CRDFPredicate::initialize ( )

staticprivate

Initialize the static information

Definition at line 532 of file CRDFPredicate.cpp.

References createAllowedLocationsAbsolute(), createAllowedLocationsRelative(), createDisplayName2Predicate(), and createURI2Predicate().

Referenced by CRDFPredicate().

{
  static bool Initialized = false;

  if (Initialized)
    return;

  Initialized = true;

  // Fill URI2Predicate
  createURI2Predicate();

  // Fill DisplayName2Predicate
  createDisplayName2Predicate();

  // Fill relative allowed locations
  createAllowedLocationsRelative();

  // Fill relative allowed locations
  createAllowedLocationsAbsolute();
}

bool CRDFPredicate::isReadOnly ( const Path &  currentPath )

static

Checks whether the element pointed to by the current path is read-only

Parameters

const

Path & currentPath

Returns

bool isReadOnly

Definition at line 681 of file CRDFPredicate.cpp.

References Predicate2AllowedLocationsAbsolute.

Referenced by CRDFNode::isReadOnly().

{
  // Iterate over each predicate
  std::vector< AllowedLocationList >::const_iterator itPredicate = Predicate2AllowedLocationsAbsolute.begin();
  std::vector< AllowedLocationList >::const_iterator endPredicate = Predicate2AllowedLocationsAbsolute.end();

  for (; itPredicate != endPredicate; ++itPredicate)
    {
      // Iterate over each location
      AllowedLocationList::const_iterator itLocation = itPredicate->begin();
      AllowedLocationList::const_iterator endLocation = itPredicate->end();

      for (; itLocation != endLocation; ++itLocation)
        if (itLocation->ReadOnly &&
            currentPath.size() == itLocation->Location.size())
          {
            // Compare the path.
            Path::const_iterator itCurrent = currentPath.begin();
            Path::const_iterator endCurrent = currentPath.end();
            Path::const_iterator itAbsolute = itLocation->Location.begin();

            for (; itCurrent != endCurrent; ++itCurrent, ++itAbsolute)
              if (*itCurrent != *itAbsolute)
                break;

            if (itCurrent == endCurrent)
              return true;
          }
    }

  return false;
}

bool CRDFPredicate::operator!=

(

const CRDFPredicate &

rhs

)

const

Comparison operator for inequality.

Parameters

const

CRDFPredicate & rhs

Returns

bool isNotEqual

Definition at line 604 of file CRDFPredicate.cpp.

References mURI.

{return mURI != rhs.mURI;}

bool CRDFPredicate::operator<

(

const CRDFPredicate &

rhs

)

const

Comparison operator for less.

Parameters

const

CRDFPredicate & rhs

Returns

bool isLess

Definition at line 607 of file CRDFPredicate.cpp.

References mURI.

{return mURI < rhs.mURI;}

CRDFPredicate CRDFPredicate::operator=

(

const ePredicateType &

type

)

Assignment operator.

Parameters

const

ePredicateType & type

Returns

CRDFPredicate predicate

Definition at line 582 of file CRDFPredicate.cpp.

References CRDFPredicate().

{return CRDFPredicate(type);}

bool CRDFPredicate::operator==

(

const CRDFPredicate &

rhs

)

const

Comparison operator for equality.

Parameters

const

CRDFPredicate & rhs

Returns

bool isEqual

Definition at line 601 of file CRDFPredicate.cpp.

References mURI.

{return mURI == rhs.mURI;}

void CRDFPredicate::setURI

(

const std::string &

uri

)

Set the URI.

Parameters

const

std::string & URI

Definition at line 588 of file CRDFPredicate.cpp.

References getPredicateFromURI(), mType, mURI, PredicateURI, and rdf_li.

{
  mType = getPredicateFromURI(uri);

  if (mType == rdf_li)
    mURI = CRDFPredicate::PredicateURI[mType];
  else
    mURI = uri;
}

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, const CRDFPredicate &  p  )

friend

Friend declaration of ostream operator

Parameters

std::ostream	& os
const	CRDFPredicate & p

Returns

std::ostream & os

Definition at line 611 of file CRDFPredicate.cpp.

{
  os << p.mType;
  return os;
}

Member Data Documentation

std::map< std::string, CRDFPredicate::ePredicateType > CRDFPredicate::DisplayName2Predicate

staticprivate

Map from display name to predicate type

Definition at line 296 of file CRDFPredicate.h.

Referenced by createDisplayName2Predicate(), and getPredicateFromDisplayName().

ePredicateType CRDFPredicate::mType

private

The type of the predicate

Definition at line 271 of file CRDFPredicate.h.

Referenced by CRDFPredicate(), getDisplayName(), getType(), getURI(), operator<<(), and setURI().

std::string CRDFPredicate::mURI

private

The URI

Definition at line 276 of file CRDFPredicate.h.

Referenced by CRDFPredicate(), getURI(), operator!=(), operator<(), operator==(), and setURI().

std::vector< CRDFPredicate::AllowedLocationList > CRDFPredicate::Predicate2AllowedLocationsAbsolute

staticprivate

Vector of absolute allowed locations

Definition at line 306 of file CRDFPredicate.h.

Referenced by createAllowedLocationsAbsolute(), createURI2Predicate(), getAllowedLocationList(), and isReadOnly().

std::vector< CRDFPredicate::AllowedLocationList > CRDFPredicate::Predicate2AllowedLocationsRelative

staticprivate

Vector of relative allowed locations

Definition at line 301 of file CRDFPredicate.h.

Referenced by createAllowedLocationsAbsolute(), createAllowedLocationsRelative(), and createURI2Predicate().

const std::string CRDFPredicate::PredicateDisplayName

staticprivate

Static strings for display names

Definition at line 291 of file CRDFPredicate.h.

Referenced by createDisplayName2Predicate(), and getDisplayName().

const std::string CRDFPredicate::PredicateURI

staticprivate

Static strings for URIs

Definition at line 281 of file CRDFPredicate.h.

Referenced by CRDFPredicate(), createURI2Predicate(), getPredicateFromURI(), getURI(), and setURI().

std::map< std::string, CRDFPredicate::ePredicateType > CRDFPredicate::URI2Predicate

staticprivate

Map from URI to predicate type

Definition at line 286 of file CRDFPredicate.h.

Referenced by createURI2Predicate(), and getPredicateFromURI().

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The documentation for this class was generated from the following files:

• CRDFPredicate.h
• CRDFPredicate.cpp