CCopasiMethod Class Reference

#include <CCopasiMethod.h>

Inheritance diagram for CCopasiMethod:

Collaboration diagram for CCopasiMethod:

Public Types
enum	SubType {   unset = 0, RandomSearch, RandomSearchMaster, SimulatedAnnealing,   CoranaWalk, DifferentialEvolution, ScatterSearch, GeneticAlgorithm,   EvolutionaryProgram, SteepestDescent, HybridGASA, GeneticAlgorithmSR,   HookeJeeves, LevenbergMarquardt, NelderMead, SRES,   Statistics, ParticleSwarm, Praxis, TruncatedNewton,   Newton, deterministic, LSODAR, directMethod,   stochastic, tauLeap, adaptiveSA, hybrid,   hybridLSODA, hybridODE45, DsaLsodar, tssILDM,   tssILDMModified, tssCSP, mcaMethodReder, scanMethod,   lyapWolf, sensMethod, EFMAlgorithm, EFMBitPatternTreeAlgorithm,   EFMBitPatternAlgorithm, Householder, crossSectionMethod, linearNoiseApproximation }
Public Types inherited from CCopasiParameterGroup
typedef parameterGroup::iterator	index_iterator
typedef CCopasiContainer::objectMap::iterator	name_iterator
typedef std::vector < CCopasiParameter * >	parameterGroup
Public Types inherited from CCopasiParameter
enum	Type {   DOUBLE = 0, UDOUBLE, INT, UINT,   BOOL, GROUP, STRING, CN,   KEY, FILE, EXPRESSION, INVALID }
Public Types inherited from CCopasiContainer
typedef std::multimap < std::string, CCopasiObject * >	objectMap
Public Types inherited from CCopasiObject
typedef std::set< const CCopasiObject * >	DataObjectSet
typedef std::vector< Refresh * >	DataUpdateSequence
Public Types inherited from CObjectInterface
typedef std::set< const CObjectInterface * >	ObjectSet
typedef std::vector < CObjectInterface * >	UpdateSequence

Public Member Functions
	CCopasiMethod (const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)
const CCopasiMethod::SubType &	getSubType () const
const CCopasiTask::Type &	getType () const
virtual bool	isValidProblem (const CCopasiProblem *pProblem)
virtual void	load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)
virtual void	print (std::ostream *ostream) const
virtual void	printResult (std::ostream *ostream) const
virtual bool	setCallBack (CProcessReport *pCallBack)
virtual	~CCopasiMethod ()
Public Member Functions inherited from CCopasiParameterGroup
bool	addGroup (const std::string &name)
bool	addParameter (const CCopasiParameter &parameter)
bool	addParameter (const std::string &name, const CCopasiParameter::Type type)
template<class CType >
bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value)
void	addParameter (CCopasiParameter *pParameter)
CCopasiParameterGroup *	assertGroup (const std::string &name)
template<class CType >
CCopasiParameter *	assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)
index_iterator	beginIndex () const
name_iterator	beginName () const
	CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)
	CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")
void	clear ()
virtual bool	elevateChildren ()
index_iterator	endIndex () const
name_iterator	endName () const
CCopasiParameterGroup *	getGroup (const std::string &name)
const CCopasiParameterGroup *	getGroup (const std::string &name) const
CCopasiParameterGroup *	getGroup (const size_t &index)
const CCopasiParameterGroup *	getGroup (const size_t &index) const
size_t	getIndex (const std::string &name) const
std::string	getKey (const std::string &name) const
std::string	getKey (const size_t &index) const
virtual const std::string &	getName (const size_t &index) const
virtual const CObjectInterface *	getObject (const CCopasiObjectName &cn) const
CCopasiParameter *	getParameter (const std::string &name)
const CCopasiParameter *	getParameter (const std::string &name) const
CCopasiParameter *	getParameter (const size_t &index)
const CCopasiParameter *	getParameter (const size_t &index) const
CCopasiParameter::Type	getType (const std::string &name) const
CCopasiParameter::Type	getType (const size_t &index) const
std::string	getUniqueParameterName (const CCopasiParameter *pParameter) const
const CCopasiParameter::Value &	getValue (const std::string &name) const
const CCopasiParameter::Value &	getValue (const size_t &index) const
CCopasiParameter::Value &	getValue (const std::string &name)
CCopasiParameter::Value &	getValue (const size_t &index)
CCopasiParameterGroup &	operator= (const CCopasiParameterGroup &rhs)
bool	removeParameter (const std::string &name)
bool	removeParameter (const size_t &index)
template<class CType >
bool	setValue (const std::string &name, const CType &value)
template<class CType >
bool	setValue (const size_t &index, const CType &value)
size_t	size () const
bool	swap (const size_t &iFrom, const size_t &iTo)
bool	swap (index_iterator &from, index_iterator &to)
virtual	~CCopasiParameterGroup ()
Public Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)
	CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")
virtual CCopasiObjectName	getCN () const
virtual const std::string &	getKey () const
virtual std::string	getObjectDisplayName (bool regular=true, bool richtext=false) const
const CCopasiParameter::Type &	getType () const
const Value &	getValue () const
Value &	getValue ()
virtual void *	getValuePointer () const
CCopasiObject *	getValueReference () const
bool	isValidValue (const C_FLOAT64 &value) const
bool	isValidValue (const C_INT32 &value) const
bool	isValidValue (const unsigned C_INT32 &value) const
bool	isValidValue (const bool &value) const
bool	isValidValue (const std::string &value) const
bool	isValidValue (const CCopasiObjectName &value) const
bool	isValidValue (const std::vector< CCopasiParameter * > &value) const
CCopasiParameter &	operator= (const CCopasiParameter &rhs)
template<class CType >
bool	setValue (const CType &value)
bool	setValue (const std::vector< CCopasiParameter * > &value)
virtual	~CCopasiParameter ()
Public Member Functions inherited from CCopasiContainer
virtual bool	add (CCopasiObject *pObject, const bool &adopt=true)
	CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)
	CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)
virtual std::string	getChildObjectUnits (const CCopasiObject *pObject) const
virtual const objectMap &	getObjects () const
virtual std::string	getUnits () const
virtual const CCopasiObject *	getValueObject () const
virtual bool	remove (CCopasiObject *pObject)
virtual	~CCopasiContainer ()
Public Member Functions inherited from CCopasiObject
void	addDirectDependency (const CCopasiObject *pObject)
	CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)
void	clearDirectDependencies ()
void	clearRefresh ()
bool	dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const
void	getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const
virtual const DataObjectSet &	getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const
CCopasiContainer *	getObjectAncestor (const std::string &type) const
CCopasiDataModel *	getObjectDataModel ()
const CCopasiDataModel *	getObjectDataModel () const
const std::string &	getObjectName () const
CCopasiContainer *	getObjectParent () const
const std::string &	getObjectType () const
virtual const CObjectInterface::ObjectSet &	getPrerequisites () const
virtual Refresh *	getRefresh () const
UpdateMethod *	getUpdateMethod () const
bool	hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const
bool	hasUpdateMethod () const
bool	isArray () const
bool	isContainer () const
bool	isDataModel () const
bool	isMatrix () const
bool	isNameVector () const
bool	isNonUniqueName () const
virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const
bool	isReference () const
bool	isRoot () const
bool	isSeparator () const
bool	isStaticString () const
bool	isValueBool () const
bool	isValueDbl () const
bool	isValueInt () const
bool	isValueInt64 () const
bool	isValueString () const
bool	isVector () const
virtual bool	mustBeDeleted (const DataObjectSet &deletedObjects) const
void	removeDirectDependency (const CCopasiObject *pObject)
void	setDirectDependencies (const DataObjectSet &directDependencies)
bool	setObjectName (const std::string &name)
virtual bool	setObjectParent (const CCopasiContainer *pParent)
void	setObjectValue (const C_FLOAT64 &value)
void	setObjectValue (const C_INT32 &value)
void	setObjectValue (const bool &value)
template<class CType >
void	setRefresh (CType *pType, void(CType::*method)(void))
template<class CType >
void	setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &))
template<class CType >
void	setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &))
template<class CType >
void	setUpdateMethod (CType *pType, void(CType::*method)(const bool &))
virtual	~CCopasiObject ()
Public Member Functions inherited from CObjectInterface
	CObjectInterface ()
virtual	~CObjectInterface ()

Static Public Attributes
static const std::string	SubTypeName []
static const char *	XMLSubType []
Static Public Attributes inherited from CCopasiParameter
static const std::string	TypeName []
static const char *	XMLType []
Static Public Attributes inherited from CCopasiContainer
static const std::vector < CCopasiContainer * >	EmptyList

Protected Member Functions
	CCopasiMethod (const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)
Protected Member Functions inherited from CCopasiParameterGroup
	CCopasiParameterGroup ()
Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObject *	addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
template<class CType >
CCopasiObject *	addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
template<class CType >
CCopasiObject *	addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
void	initObjects ()
Protected Member Functions inherited from CCopasiObject
	CCopasiObject ()
	CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)

Protected Attributes
CProcessReport *	mpCallBack
Protected Attributes inherited from CCopasiParameter
std::string	mKey
CCopasiObject *	mpValueReference
size_t	mSize
Value	mValue
Protected Attributes inherited from CCopasiContainer
objectMap	mObjects

Private Member Functions
	CCopasiMethod ()

Private Attributes
CCopasiMethod::SubType	mSubType
CCopasiTask::Type	mType

Friends
std::ostream &	operator<< (std::ostream &os, const CCopasiMethod &o)

Additional Inherited Members
Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * >	buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())
static void	setRenameHandler (CRenameHandler *rh)
Protected Types inherited from CCopasiObject
enum	Flag {   Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8,   Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80,   ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800,   Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000,   Root = 0x10000, Gui = 0x20000 }
Static Protected Attributes inherited from CCopasiObject
static CRenameHandler *	smpRenameHandler = NULL

Detailed Description

Definition at line 34 of file CCopasiMethod.h.

Member Enumeration Documentation

enum CCopasiMethod::SubType

Enumeration of the sub types of methods known to COPASI.

Enumerator
unset
RandomSearch
RandomSearchMaster
SimulatedAnnealing
CoranaWalk
DifferentialEvolution
ScatterSearch
GeneticAlgorithm
EvolutionaryProgram
SteepestDescent
HybridGASA
GeneticAlgorithmSR
HookeJeeves
LevenbergMarquardt
NelderMead
SRES
Statistics
ParticleSwarm
Praxis
TruncatedNewton
Newton
deterministic
LSODAR
directMethod
stochastic
tauLeap
adaptiveSA
hybrid
hybridLSODA
hybridODE45
DsaLsodar
tssILDM
tssILDMModified
tssCSP
mcaMethodReder
scanMethod
lyapWolf
sensMethod
EFMAlgorithm
EFMBitPatternTreeAlgorithm
EFMBitPatternAlgorithm
Householder
crossSectionMethod
linearNoiseApproximation

Definition at line 40 of file CCopasiMethod.h.

  {
    unset = 0,
    RandomSearch,
    RandomSearchMaster,
    SimulatedAnnealing,
    CoranaWalk,
    DifferentialEvolution,
    ScatterSearch,
    GeneticAlgorithm,
    EvolutionaryProgram,
    SteepestDescent,
    HybridGASA,
    GeneticAlgorithmSR,
    HookeJeeves,
    LevenbergMarquardt,
    NelderMead,
    SRES,
    Statistics,
    ParticleSwarm,
    Praxis,
    TruncatedNewton,
    Newton,
    deterministic,
    LSODAR,
    directMethod,
    stochastic,
    tauLeap,
    adaptiveSA,
    hybrid,
    hybridLSODA,
    hybridODE45,
    DsaLsodar,
    tssILDM,
    tssILDMModified,
    tssCSP,
    mcaMethodReder,
    scanMethod,
    lyapWolf,
    sensMethod,
#ifdef COPASI_SSA
    stoichiometricStabilityAnalysis,
#endif // COPASI_SSA
    EFMAlgorithm,
    EFMBitPatternTreeAlgorithm,
    EFMBitPatternAlgorithm,
    Householder,
    crossSectionMethod,
    linearNoiseApproximation
  };

Constructor & Destructor Documentation

CCopasiMethod::CCopasiMethod ( )

private

A pointer to the report Default constructor

Definition at line 134 of file CCopasiMethod.cpp.

References mType, CCopasiObject::setObjectName(), and SubTypeName.

                            :
  CCopasiParameterGroup("NoName", NULL, "Method"),
  mType(CCopasiTask::unset),
  mSubType(unset),
  mpCallBack(NULL)
  //mpReport(NULL)
{setObjectName(SubTypeName[mType]);}

CCopasiMethod::CCopasiMethod ( const CCopasiTask::Type &  taskType, const SubType &  subType, const CCopasiContainer *  pParent = NULL  )

protected

Specific constructor

Parameters

const	CCopasiTask::Type & type
const	CCopasiMethod::SubType & subType
const	CCopasiContainer * pParent (default: NULL)

Definition at line 142 of file CCopasiMethod.cpp.

References mSubType, CCopasiObject::setObjectName(), and SubTypeName.

                                                              :
  CCopasiParameterGroup(CCopasiTask::TypeName[type], pParent, "Method"),
  mType(type),
  mSubType(subType),
  mpCallBack(NULL)
  //mpReport(NULL)
{setObjectName(SubTypeName[mSubType]);}

CCopasiMethod::CCopasiMethod	(	const CCopasiMethod &	src,
		const CCopasiContainer *	pParent = NULL
	)

Copy constructor

Parameters

const	CCopasiMethodr & src
const	CCopasiContainer * pParent (default: NULL)

Definition at line 152 of file CCopasiMethod.cpp.

                                                              :
  CCopasiParameterGroup(src, pParent),
  mType(src.mType),
  mSubType(src.mSubType),
  mpCallBack(src.mpCallBack)
  //mpReport(src.mpReport)
{}

CCopasiMethod::~CCopasiMethod ( )

virtual

Destructor

Definition at line 161 of file CCopasiMethod.cpp.

{}

Member Function Documentation

const CCopasiMethod::SubType & CCopasiMethod::getSubType

(

)

const

Retrieve the sub type of the method

Returns

CCopasiMethod::SubType & subType

Definition at line 173 of file CCopasiMethod.cpp.

References mSubType.

Referenced by CQTaskMethodWidget::addToHistory(), CCrossSectionTask::CCrossSectionTask(), CEFMTask::CEFMTask(), CFitTask::CFitTask(), CLNATask::CLNATask(), CMCATask::CMCATask(), CMoietiesTask::CMoietiesTask(), COptTask::COptTask(), COscillationTask::COscillationTask(), CSensTask::CSensTask(), CSteadyStateTask::CSteadyStateTask(), CTrajectoryTask::CTrajectoryTask(), CTSSATask::CTSSATask(), CEFMTask::getFluxModeDescription(), CEFMTask::getReactionEquation(), CNewtonMethod::initialize(), CTSSAMethod::isValidProblem(), CQTaskMethodWidget::loadMethod(), CQSimpleSelectionTree::populateTree(), CQTaskMethodWidget::removeFromHistory(), CQTaskMethodWidget::saveMethod(), CCopasiXML::saveTaskList(), CTSSAMethod::schur(), CFitTask::setMethodType(), CMoietiesTask::setMethodType(), COscillationTask::setMethodType(), COptTask::setMethodType(), CEFMTask::setMethodType(), CTrajectoryTask::setMethodType(), CLyapTask::setMethodType(), CTSSATask::setMethodType(), CCrossSectionTask::setMethodType(), CQTaskMethodWidget::setTask(), and CCopasiXMLParser::MethodElement::start().

{return mSubType;}

const CCopasiTask::Type & CCopasiMethod::getType

(

void

)

const

Retrieve the type of the method

Returns

const string & type

Definition at line 169 of file CCopasiMethod.cpp.

References mType.

{return mType;}

bool CCopasiMethod::isValidProblem ( const CCopasiProblem *  pProblem )

virtual

Check if the method is suitable for this problem

Returns

bool suitability of the method

Reimplemented in CTrajectoryMethodDsaLsodar, CScanMethod, CStochMethod, CLyapWolfMethod, CTrajAdaptiveSA, CLNAMethod, CStochDirectMethod, CHybridMethodLSODA, CHybridMethodODE45, CHybridMethod, CTauLeapMethod, CTrajectoryMethod, CSteadyStateMethod, CMCAMethod, CTSSAMethod, CLyapMethod, COptMethod, CNewtonMethod, CSensMethod, COscillationMethod, CEFMMethod, CFitMethod, and CCrossSectionMethod.

Definition at line 180 of file CCopasiMethod.cpp.

References CCopasiMessage::ERROR, CCopasiMessage::EXCEPTION, CModel::getEvents(), CCopasiProblem::getModel(), CCopasiTask::lna, CCopasiTask::lyap, MCCopasiMethod, mType, CCopasiVector< T >::size(), and CCopasiTask::tssAnalysis.

Referenced by CMoietiesTask::initialize(), CLNATask::initialize(), CEFMTask::initialize(), CScanTask::initialize(), CLyapTask::initialize(), CMCATask::initialize(), CTrajectoryTask::initialize(), CTSSATask::initialize(), CSteadyStateTask::initialize(), CCrossSectionTask::initialize(), CCrossSectionMethod::isValidProblem(), CEFMMethod::isValidProblem(), COscillationMethod::isValidProblem(), CSensMethod::isValidProblem(), COptMethod::isValidProblem(), CLyapMethod::isValidProblem(), CTSSAMethod::isValidProblem(), CMCAMethod::isValidProblem(), CSteadyStateMethod::isValidProblem(), CTrajectoryMethod::isValidProblem(), CLNAMethod::isValidProblem(), CScanMethod::isValidProblem(), CFitTask::process(), CSensTask::process(), COscillationTask::process(), COptTask::process(), CLNATask::updateMatrices(), CMCATask::updateMatrices(), and CTSSATask::updateMatrices().

{
  if (!pProblem)
    {
      //no problem
      CCopasiMessage(CCopasiMessage::EXCEPTION, MCCopasiMethod + 2);
      return false;
    }

  if (! pProblem->getModel())
    {
      //no model
      CCopasiMessage(CCopasiMessage::EXCEPTION, MCCopasiMethod + 3);
      return false;
    }

  if (pProblem->getModel()->getEvents().size())
    {
      if (mType == CCopasiTask::lyap)
        {
          CCopasiMessage(CCopasiMessage::ERROR, MCCopasiMethod + 4, "Lyapunov Exponents");
          return false;
        }

      if (mType == CCopasiTask::tssAnalysis)
        {
          CCopasiMessage(CCopasiMessage::ERROR, MCCopasiMethod + 4, "Time Scale Separation Analysis");
          return false;
        }

      if (mType == CCopasiTask::lna)
        {
          CCopasiMessage(CCopasiMessage::ERROR, MCCopasiMethod + 4, "Linear Noise Approximation");
          return false;
        }
    }

  return true;
}

void CCopasiMethod::load ( CReadConfig &  configBuffer, CReadConfig::Mode  mode = CReadConfig::SEARCH  )

virtual

Load a list of parameters

Parameters

CReadConfig &	configBuffer
CReadConfig::Mode	mode Default(CReadConfig::SEARCH)

Reimplemented in CNewtonMethod.

Definition at line 220 of file CCopasiMethod.cpp.

References fatalError.

{fatalError();}

void CCopasiMethod::print ( std::ostream *  ostream ) const

virtual

This is the output method for any object. The default implementation provided with CCopasiObject uses the ostream operator<< of the object to print the object.To overide this default behaviour one needs to reimplement the virtual print function.

Parameters

std::ostream

* ostream

Reimplemented from CCopasiParameterGroup.

Definition at line 224 of file CCopasiMethod.cpp.

Referenced by operator<<(), CILDMModifiedMethod::printResult(), and CCSPMethod::printResult().

{*ostream << *this;}

void CCopasiMethod::printResult ( std::ostream *  ostream ) const

virtual

This is the output method for any result of a method. The default implementation provided with CCopasiMethod. Does only print "Not implmented." To overide this default behaviour one needs to reimplement the virtual printResult function.

Parameters

std::ostream

* ostream

Reimplemented in CCSPMethod, CILDMMethod, and CILDMModifiedMethod.

Definition at line 245 of file CCopasiMethod.cpp.

Referenced by CTSSAProblem::printResult().

{*ostream << " Not implemented.";}

bool CCopasiMethod::setCallBack ( CProcessReport *  pCallBack )

virtual

Set the call back of the problem

Parameters

CProcessReport

* pCallBack

Returns

bool succes

Definition at line 163 of file CCopasiMethod.cpp.

References mpCallBack.

Referenced by CMoietiesTask::setCallBack(), CFitTask::setCallBack(), COscillationTask::setCallBack(), CEFMTask::setCallBack(), and COptTask::setCallBack().

{
  mpCallBack = pCallBack;
  return true;
}

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  os, const CCopasiMethod &  o  )

friend

Output stream operator

Parameters

ostream	& os
const	CCopasiMethod & A

Returns

ostream & os

Definition at line 227 of file CCopasiMethod.cpp.

{
  os << "Method: " << o.getObjectName() << std::endl;

  CCopasiParameterGroup::parameterGroup::const_iterator it =
    o.CCopasiParameter::getValue().pGROUP->begin();
  CCopasiParameterGroup::parameterGroup::const_iterator end =
    o.CCopasiParameter::getValue().pGROUP->end();

  for (; it != end; ++it)
    {
      (*it)->print(&os);
      os << std::endl;
    }

  return os;
}

Member Data Documentation

CProcessReport* CCopasiMethod::mpCallBack

protected

a pointer to the callback

Definition at line 118 of file CCopasiMethod.h.

Referenced by CSSAMethod::calculate(), CEFMAlgorithm::calculate(), CBitPatternMethod::calculate(), CBitPatternTreeMethod::calculate(), CEFMAlgorithm::calculateFluxModes(), CEFMAlgorithm::calculateNextTableau(), CBitPatternTreeMethod::combine(), CBitPatternMethod::combine(), CSensMethod::do_target_calculation(), CNewtonMethod::doIntegration(), CSSAMethod::initialize(), COptMethodEP::initialize(), COptMethodDE::initialize(), COptMethodSRES::initialize(), COptMethodPS::initialize(), COptMethodGA::initialize(), COptMethodGASR::initialize(), COptMethodHookeJeeves::initialize(), COptMethodCoranaWalk::initialize(), COptMethodSA::initialize(), COptMethodLevenbergMarquardt::initialize(), COptMethodNelderMead::initialize(), CEFMAlgorithm::initialize(), COptMethodSS::initialize(), CBitPatternMethod::initialize(), CBitPatternTreeMethod::initialize(), COptMethodDE::optimise(), COptMethodSRES::optimise(), COptMethodSS::optimise(), COptMethodGA::optimise(), COptMethodPS::optimise(), COptMethodHookeJeeves::optimise(), COptMethodGASR::optimise(), COptMethodSA::optimise(), COptMethodNelderMead::optimise(), COptMethodCoranaWalk::optimise(), COptMethodLevenbergMarquardt::optimise(), COptMethodEP::optimise(), CMoietiesMethod::process(), CSensMethod::process(), CSteadyStateMethod::process(), CNewtonMethod::processInternal(), CNewtonMethod::processNewton(), and setCallBack().

CCopasiMethod::SubType CCopasiMethod::mSubType

private

The type of the method

Definition at line 112 of file CCopasiMethod.h.

Referenced by CCopasiMethod(), and getSubType().

CCopasiTask::Type CCopasiMethod::mType

private

The type of the method

Definition at line 107 of file CCopasiMethod.h.

Referenced by CCopasiMethod(), getType(), and isValidProblem().

const std::string CCopasiMethod::SubTypeName

static

String literals for the GUI to display sub type names of methods known to COPASI.

CCopasiMethod class. This class is used to describe a task in COPASI. This class is intended to be used as the parent class for all methods whithin COPASI.

Created for Copasi by Stefan Hoops 2003

Definition at line 95 of file CCopasiMethod.h.

Referenced by CCopasiMethod(), CQTaskMethodWidget::changeMethod(), CQTaskMethodWidget::loadMethod(), and CQTaskMethodWidget::setValidMethods().

const char * CCopasiMethod::XMLSubType

static

XML sub type names of methods known to COPASI.

Definition at line 100 of file CCopasiMethod.h.

Referenced by CCopasiXML::saveTaskList(), and CCopasiXMLParser::MethodElement::start().

---

The documentation for this class was generated from the following files:

• CCopasiMethod.h
• CCopasiMethod.cpp