COPASI API  4.16.103
Public Member Functions | Private Member Functions | Friends | List of all members
CHybridNextReactionRKMethod Class Reference

#include <CHybridNextReactionRKMethod.h>

Inheritance diagram for CHybridNextReactionRKMethod:
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Collaboration diagram for CHybridNextReactionRKMethod:
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Public Member Functions

C_FLOAT64 doSingleStep (C_FLOAT64 time, C_FLOAT64 endTime)
 
- Public Member Functions inherited from CHybridMethod
 CHybridMethod (const CHybridMethod &src, const CCopasiContainer *pParent=NULL)
 
virtual bool elevateChildren ()
 
virtual bool isValidProblem (const CCopasiProblem *pProblem)
 
virtual void start (const CState *initialState)
 
virtual Status step (const double &deltaT)
 
 ~CHybridMethod ()
 
- Public Member Functions inherited from CTrajectoryMethod
 CTrajectoryMethod (const CTrajectoryMethod &src, const CCopasiContainer *pParent=NULL)
 
const CVector< C_INT > & getRoots () const
 
void setCurrentState (CState *currentState)
 
void setProblem (CTrajectoryProblem *problem)
 
virtual void stateChanged ()
 
 ~CTrajectoryMethod ()
 
- Public Member Functions inherited from CCopasiMethod
 CCopasiMethod (const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)
 
const CCopasiMethod::SubType & getSubType () const
 
const CCopasiTask::Type & getType () const
 
virtual void load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)
 
virtual void print (std::ostream *ostream) const
 
virtual void printResult (std::ostream *ostream) const
 
virtual bool setCallBack (CProcessReport *pCallBack)
 
virtual ~CCopasiMethod ()
 
- Public Member Functions inherited from CCopasiParameterGroup
bool addGroup (const std::string &name)
 
bool addParameter (const CCopasiParameter &parameter)
 
bool addParameter (const std::string &name, const CCopasiParameter::Type type)
 
template<class CType >
bool addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value)
 
void addParameter (CCopasiParameter *pParameter)
 
CCopasiParameterGroup * assertGroup (const std::string &name)
 
template<class CType >
CCopasiParameter * assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)
 
index_iterator beginIndex () const
 
name_iterator beginName () const
 
 CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)
 
 CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")
 
void clear ()
 
index_iterator endIndex () const
 
name_iterator endName () const
 
CCopasiParameterGroup * getGroup (const std::string &name)
 
const CCopasiParameterGroup * getGroup (const std::string &name) const
 
CCopasiParameterGroup * getGroup (const size_t &index)
 
const CCopasiParameterGroup * getGroup (const size_t &index) const
 
size_t getIndex (const std::string &name) const
 
std::string getKey (const std::string &name) const
 
std::string getKey (const size_t &index) const
 
virtual const std::string & getName (const size_t &index) const
 
virtual const CObjectInterface * getObject (const CCopasiObjectName &cn) const
 
CCopasiParameter * getParameter (const std::string &name)
 
const CCopasiParameter * getParameter (const std::string &name) const
 
CCopasiParameter * getParameter (const size_t &index)
 
const CCopasiParameter * getParameter (const size_t &index) const
 
CCopasiParameter::Type getType (const std::string &name) const
 
CCopasiParameter::Type getType (const size_t &index) const
 
std::string getUniqueParameterName (const CCopasiParameter *pParameter) const
 
const CCopasiParameter::Value & getValue (const std::string &name) const
 
const CCopasiParameter::Value & getValue (const size_t &index) const
 
CCopasiParameter::Value & getValue (const std::string &name)
 
CCopasiParameter::Value & getValue (const size_t &index)
 
CCopasiParameterGroup & operator= (const CCopasiParameterGroup &rhs)
 
bool removeParameter (const std::string &name)
 
bool removeParameter (const size_t &index)
 
template<class CType >
bool setValue (const std::string &name, const CType &value)
 
template<class CType >
bool setValue (const size_t &index, const CType &value)
 
size_t size () const
 
bool swap (const size_t &iFrom, const size_t &iTo)
 
bool swap (index_iterator &from, index_iterator &to)
 
virtual ~CCopasiParameterGroup ()
 
- Public Member Functions inherited from CCopasiParameter
 CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)
 
 CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")
 
virtual CCopasiObjectName getCN () const
 
virtual const std::string & getKey () const
 
virtual std::string getObjectDisplayName (bool regular=true, bool richtext=false) const
 
const CCopasiParameter::Type & getType () const
 
const Value & getValue () const
 
Value & getValue ()
 
virtual void * getValuePointer () const
 
CCopasiObject * getValueReference () const
 
bool isValidValue (const C_FLOAT64 &value) const
 
bool isValidValue (const C_INT32 &value) const
 
bool isValidValue (const unsigned C_INT32 &value) const
 
bool isValidValue (const bool &value) const
 
bool isValidValue (const std::string &value) const
 
bool isValidValue (const CCopasiObjectName &value) const
 
bool isValidValue (const std::vector< CCopasiParameter * > &value) const
 
CCopasiParameter & operator= (const CCopasiParameter &rhs)
 
template<class CType >
bool setValue (const CType &value)
 
bool setValue (const std::vector< CCopasiParameter * > &value)
 
virtual ~CCopasiParameter ()
 
- Public Member Functions inherited from CCopasiContainer
virtual bool add (CCopasiObject *pObject, const bool &adopt=true)
 
 CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)
 
 CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)
 
virtual std::string getChildObjectUnits (const CCopasiObject *pObject) const
 
virtual const objectMap & getObjects () const
 
virtual std::string getUnits () const
 
virtual const CCopasiObject * getValueObject () const
 
virtual bool remove (CCopasiObject *pObject)
 
virtual ~CCopasiContainer ()
 
- Public Member Functions inherited from CCopasiObject
void addDirectDependency (const CCopasiObject *pObject)
 
 CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)
 
void clearDirectDependencies ()
 
void clearRefresh ()
 
bool dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const
 
void getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const
 
virtual const DataObjectSet & getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const
 
CCopasiContainer * getObjectAncestor (const std::string &type) const
 
CCopasiDataModel * getObjectDataModel ()
 
const CCopasiDataModel * getObjectDataModel () const
 
const std::string & getObjectName () const
 
CCopasiContainer * getObjectParent () const
 
const std::string & getObjectType () const
 
virtual const
CObjectInterface::ObjectSet & 		getPrerequisites () const
 
virtual Refresh * getRefresh () const
 
UpdateMethod * getUpdateMethod () const
 
bool hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const
 
bool hasUpdateMethod () const
 
bool isArray () const
 
bool isContainer () const
 
bool isDataModel () const
 
bool isMatrix () const
 
bool isNameVector () const
 
bool isNonUniqueName () const
 
virtual bool isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const
 
bool isReference () const
 
bool isRoot () const
 
bool isSeparator () const
 
bool isStaticString () const
 
bool isValueBool () const
 
bool isValueDbl () const
 
bool isValueInt () const
 
bool isValueInt64 () const
 
bool isValueString () const
 
bool isVector () const
 
virtual bool mustBeDeleted (const DataObjectSet &deletedObjects) const
 
void removeDirectDependency (const CCopasiObject *pObject)
 
void setDirectDependencies (const DataObjectSet &directDependencies)
 
bool setObjectName (const std::string &name)
 
virtual bool setObjectParent (const CCopasiContainer *pParent)
 
void setObjectValue (const C_FLOAT64 &value)
 
void setObjectValue (const C_INT32 &value)
 
void setObjectValue (const bool &value)
 
template<class CType >
void setRefresh (CType *pType, void(CType::*method)(void))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const bool &))
 
virtual ~CCopasiObject ()
 
- Public Member Functions inherited from CObjectInterface
 CObjectInterface ()
 
virtual ~CObjectInterface ()
 

Private Member Functions

 CHybridNextReactionRKMethod (const CCopasiContainer *pParent=NULL)
 

Friends

CHybridMethod * CHybridMethod::createHybridMethod ()
 

Additional Inherited Members

- Public Types inherited from CTrajectoryMethod
enum  Status { FAILURE = -1, NORMAL = 0, ROOT = 1 }
 
- Public Types inherited from CCopasiMethod
enum  SubType {
  unset = 0, RandomSearch, RandomSearchMaster, SimulatedAnnealing,
  CoranaWalk, DifferentialEvolution, ScatterSearch, GeneticAlgorithm,
  EvolutionaryProgram, SteepestDescent, HybridGASA, GeneticAlgorithmSR,
  HookeJeeves, LevenbergMarquardt, NelderMead, SRES,
  Statistics, ParticleSwarm, Praxis, TruncatedNewton,
  Newton, deterministic, LSODAR, directMethod,
  stochastic, tauLeap, adaptiveSA, hybrid,
  hybridLSODA, hybridODE45, DsaLsodar, tssILDM,
  tssILDMModified, tssCSP, mcaMethodReder, scanMethod,
  lyapWolf, sensMethod, EFMAlgorithm, EFMBitPatternTreeAlgorithm,
  EFMBitPatternAlgorithm, Householder, crossSectionMethod, linearNoiseApproximation
}
 
- Public Types inherited from CCopasiParameterGroup
typedef parameterGroup::iterator index_iterator
 
typedef
CCopasiContainer::objectMap::iterator 		name_iterator
 
typedef std::vector
< CCopasiParameter * > 		parameterGroup
 
- Public Types inherited from CCopasiParameter
enum  Type {
  DOUBLE = 0, UDOUBLE, INT, UINT,
  BOOL, GROUP, STRING, CN,
  KEY, FILE, EXPRESSION, INVALID
}
 
- Public Types inherited from CCopasiContainer
typedef std::multimap
< std::string, CCopasiObject * > 		objectMap
 
- Public Types inherited from CCopasiObject
typedef std::set< const
CCopasiObject * > 		DataObjectSet
 
typedef std::vector< Refresh * > DataUpdateSequence
 
- Public Types inherited from CObjectInterface
typedef std::set< const
CObjectInterface * > 		ObjectSet
 
typedef std::vector
< CObjectInterface * > 		UpdateSequence
 
- Static Public Member Functions inherited from CHybridMethod
static CHybridMethod * createHybridMethod ()
 
- Static Public Member Functions inherited from CTrajectoryMethod
static CTrajectoryMethod * createMethod (CCopasiMethod::SubType subType=CCopasiMethod::deterministic)
 
- Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * > buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())
 
static void setRenameHandler (CRenameHandler *rh)
 
- Static Public Attributes inherited from CCopasiMethod
static const std::string SubTypeName []
 
static const char * XMLSubType []
 
- Static Public Attributes inherited from CCopasiParameter
static const std::string TypeName []
 
static const char * XMLType []
 
- Static Public Attributes inherited from CCopasiContainer
static const std::vector
< CCopasiContainer * > 		EmptyList
 
- Protected Types inherited from CHybridMethod
enum  metabStatus { LOW = 0, HIGH }
 
- Protected Types inherited from CCopasiObject
enum  Flag {
  Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8,
  Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80,
  ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800,
  Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000,
  Root = 0x10000, Gui = 0x20000
}
 
- Protected Member Functions inherited from CHybridMethod
void calculateAmu (size_t rIndex)
 
void calculateDerivative (std::vector< C_FLOAT64 > &deriv)
 
 CHybridMethod (const CCopasiContainer *pParent=NULL)
 
void cleanup ()
 
void fireReaction (size_t rIndex)
 
C_FLOAT64 generateReactionTime (size_t rIndex)
 
std::set< std::string > * getAffects (size_t rIndex)
 
std::set< std::string > * getDependsOn (size_t rIndex)
 
std::set< size_t > * getParticipatesIn (size_t rIndex)
 
void getState (std::vector< C_FLOAT64 > &target)
 
void getStochTimeAndIndex (C_FLOAT64 &ds, size_t &rIndex)
 
void initMethod (C_FLOAT64 time)
 
void insertDeterministicReaction (size_t rIndex)
 
void integrateDeterministicPart (C_FLOAT64 ds)
 
void integrateDeterministicPartEuler (C_FLOAT64 ds)
 
void outputData (std::ostream &os, C_INT32 mode)
 
void outputDebug (std::ostream &os, size_t level)
 
void partitionSystem ()
 
void removeDeterministicReaction (size_t rIndex)
 
void rungeKutta (C_FLOAT64 dt)
 
void setState (std::vector< C_FLOAT64 > &source)
 
void setupBalances ()
 
void setupDependencyGraph ()
 
void setupMetab2React ()
 
void setupMetab2ReactComplete ()
 
void setupMetab2ReactPlusModifier ()
 
void setupPartition ()
 
void setupPriorityQueue (C_FLOAT64 startTime=0.0)
 
void updatePriorityQueue (size_t rIndex, C_FLOAT64 time)
 
void updateTauMu (size_t rIndex, C_FLOAT64 time)
 
- Protected Member Functions inherited from CTrajectoryMethod
 CTrajectoryMethod (const CCopasiMethod::SubType &subType, const CCopasiContainer *pParent=NULL)
 
- Protected Member Functions inherited from CCopasiMethod
 CCopasiMethod (const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)
 
- Protected Member Functions inherited from CCopasiParameterGroup
 CCopasiParameterGroup ()
 
- Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObject * addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObject * addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObject * addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
void initObjects ()
 
- Protected Member Functions inherited from CCopasiObject
 CCopasiObject ()
 
 CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)
 
- Static Protected Member Functions inherited from CHybridMethod
static C_INT32 checkModel (CModel *model)
 
static bool modelHasAssignments (const CModel *pModel)
 
- Protected Attributes inherited from CHybridMethod
std::vector< C_FLOAT64 > currentState
 
std::vector< C_FLOAT64 > k1
 
std::vector< C_FLOAT64 > k2
 
std::vector< C_FLOAT64 > k3
 
std::vector< C_FLOAT64 > k4
 
std::vector< C_FLOAT64 > mAmu
 
std::vector< C_FLOAT64 > mAmuOld
 
CDependencyGraph mDG
 
bool mDoCorrection
 
size_t mFirstMetabIndex
 
CHybridStochFlag * mFirstReactionFlag
 
bool mHasAssignments
 
std::vector< std::vector
< CHybridBalance > > 		mLocalBalances
 
std::vector< std::vector
< CHybridBalance > > 		mLocalSubstrates
 
C_FLOAT64 mLowerStochLimit
 
size_t mMaxBalance
 
size_t mMaxIntBeforeStep
 
unsigned C_INT32 mMaxSteps
 
bool mMaxStepsReached
 
std::vector< std::set< size_t > > mMetab2React
 
std::vector< metabStatus > mMetabFlags
 
size_t mNumVariableMetabs
 
size_t mOutputCounter
 
std::ofstream mOutputFile
 
std::string mOutputFileName
 
unsigned C_INT32 mPartitioningInterval
 
CCopasiVector< CMetab > * mpMetabolites
 
CModel * mpModel
 
CIndexedPriorityQueue mPQ
 
CRandom * mpRandomGenerator
 
const CCopasiVectorNS
< CReaction > * 		mpReactions
 
unsigned C_INT32 mRandomSeed
 
std::vector< CHybridStochFlag > mReactionFlags
 
size_t mStepsAfterPartitionSystem
 
C_FLOAT64 mStepsize
 
CMatrix< C_FLOAT64 > mStoi
 
std::set< size_t > mUpdateSet
 
C_FLOAT64 mUpperStochLimit
 
bool mUseRandomSeed
 
std::vector< C_FLOAT64 > temp
 
- Protected Attributes inherited from CTrajectoryMethod
CState * mpCurrentState
 
CTrajectoryProblem * mpProblem
 
CVector< C_INT > mRoots
 
- Protected Attributes inherited from CCopasiMethod
CProcessReport * mpCallBack
 
- Protected Attributes inherited from CCopasiParameter
std::string mKey
 
CCopasiObject * mpValueReference
 
size_t mSize
 
Value mValue
 
- Protected Attributes inherited from CCopasiContainer
objectMap mObjects
 
- Static Protected Attributes inherited from CCopasiObject
static CRenameHandler * smpRenameHandler = NULL
 

Detailed Description

CHybridNextReactionRKMethod

First approach to an hybrid algorithm. Gibson's Next Reaction method is combined with a RungeKutta numerical integrator.

File name: CHybridNextReactionRKMethod.h Author: Juergen Pahle Email: juerg.nosp@m.en.p.nosp@m.ahle@.nosp@m.eml..nosp@m.villa.nosp@m.-bos.nosp@m.ch.de

Last change: 21, January 2003

(C) European Media Lab 2003.

Definition at line 37 of file CHybridNextReactionRKMethod.h.

Constructor & Destructor Documentation

CHybridNextReactionRKMethod::CHybridNextReactionRKMethod ( const CCopasiContainer *  pParent = NULL)
private

Default constructor

CHybridNextReactionRKMethod

First approach to an hybrid algorithm. Gibson's Next Reaction method is combined with a RungeKutta numerical integrator.

File name: CHybridNextReactionRKMethod.h Author: Juergen Pahle Email: juerg.nosp@m.en.p.nosp@m.ahle@.nosp@m.eml-.nosp@m.r.vil.nosp@m.la-b.nosp@m.osch..nosp@m.de

Last change: 15, December 2004

(C) European Media Lab 2003.

Definition at line 38 of file CHybridNextReactionRKMethod.cpp.

38  : CHybridMethod(pParent)
39 {}
CHybridMethod::CHybridMethod
CHybridMethod(const CHybridMethod &src, const CCopasiContainer *pParent=NULL)
Definition: CHybridMethod.cpp:70

Member Function Documentation

C_FLOAT64 CHybridNextReactionRKMethod::doSingleStep ( C_FLOAT64  currentTime,
C_FLOAT64  endTime 
)
virtual

Do one iteration of the simulation

Returns
Current simulation time or -1 in case of an error

Simulates the system over the next interval of time. The new time after this step is returned.

Parameters
currentTimeA C_FLOAT64 specifying the current time
endTimeA C_FLOAT64 specifying the endTime of the current step()
Returns
A C_FLOAT giving the new time

Implements CHybridMethod.

Definition at line 49 of file CHybridNextReactionRKMethod.cpp.

References C_FLOAT64, C_INVALID_INDEX, CHybridMethod::fireReaction(), CHybridMethod::getStochTimeAndIndex(), CHybridMethod::integrateDeterministicPart(), CHybridMethod::mFirstReactionFlag, CHybridMethod::mPartitioningInterval, CTrajectoryMethod::mpCurrentState, CHybridMethod::mPQ, CHybridMethod::mStepsAfterPartitionSystem, CHybridMethod::mStepsize, CHybridMethod::partitionSystem(), CState::setTime(), CIndexedPriorityQueue::size(), and CHybridMethod::updatePriorityQueue().

50 {
51  size_t rIndex = 0;
52  C_FLOAT64 ds = 0.0;
53 
54  // if there are stochastic reactions
55  if (mPQ.size() != 0) // there is at least one stochastic reaction
56  {
57  getStochTimeAndIndex(ds, rIndex);
58 
59  if (ds <= endTime) // ds is an absolute time value!
60  {
61  // if there are deterministic reactions
62  if (mFirstReactionFlag != NULL) // there is at least one deterministic reaction
63  {
64  integrateDeterministicPart(ds - currentTime);
65  }
66 
67  fireReaction(rIndex);
68  mpCurrentState->setTime(ds);
69 
70  if (++mStepsAfterPartitionSystem >= mPartitioningInterval)
71  {
72  partitionSystem();
73  mStepsAfterPartitionSystem = 0;
74  }
75 
76  updatePriorityQueue(rIndex, ds);
77  }
78  else
79  {
80  ds = endTime;
81 
82  // if there are deterministic reactions
83  if (mFirstReactionFlag != NULL) // there is at least one deterministic reaction
84  {
85  integrateDeterministicPart(endTime - currentTime);
86  }
87 
88  mpCurrentState->setTime(ds);
89 
90  if (++mStepsAfterPartitionSystem >= mPartitioningInterval)
91  {
92  partitionSystem();
93  mStepsAfterPartitionSystem = 0;
94  }
95 
96  updatePriorityQueue(C_INVALID_INDEX, endTime);
97  }
98  }
99  else // there is no stochastic reaction
100  {
101  ds = currentTime + mStepsize;
102 
103  if (ds <= endTime)
104  {
105  // if there are deterministic reactions
106  if (mFirstReactionFlag != NULL) // there is at least one deterministic reaction
107  {
108  integrateDeterministicPart(mStepsize);
109  }
110 
111  mpCurrentState->setTime(ds);
112 
113  if (++mStepsAfterPartitionSystem >= mPartitioningInterval)
114  {
115  partitionSystem();
116  mStepsAfterPartitionSystem = 0;
117  }
118 
119  updatePriorityQueue(C_INVALID_INDEX, ds);
120  }
121  else
122  {
123  ds = endTime;
124 
125  // if there are deterministic reactions
126  if (mFirstReactionFlag != NULL) // there is at least one deterministic reaction
127  {
128  integrateDeterministicPart(endTime - currentTime);
129  }
130 
131  mpCurrentState->setTime(ds);
132 
133  if (++mStepsAfterPartitionSystem >= mPartitioningInterval)
134  {
135  partitionSystem();
136  mStepsAfterPartitionSystem = 0;
137  }
138 
139  updatePriorityQueue(C_INVALID_INDEX, endTime);
140  }
141  }
142 
143  //deprecated: outputDebug(mOutputFile, 1); // DEBUG
144  //deprecated: outputData(mOutputFile, 1); // DEBUG
145  return ds;
146 }
CHybridMethod::getStochTimeAndIndex
void getStochTimeAndIndex(C_FLOAT64 &ds, size_t &rIndex)
Definition: CHybridMethod.cpp:574
CHybridMethod::mFirstReactionFlag
CHybridStochFlag * mFirstReactionFlag
Definition: CHybridMethod.h:543
C_INVALID_INDEX
#define C_INVALID_INDEX
Definition: copasi.h:222
CHybridMethod::mPQ
CIndexedPriorityQueue mPQ
Definition: CHybridMethod.h:619
CState::setTime
void setTime(const C_FLOAT64 &time)
Definition: CState.cpp:326
CHybridMethod::integrateDeterministicPart
void integrateDeterministicPart(C_FLOAT64 ds)
Definition: CHybridMethod.cpp:335
CHybridMethod::mStepsAfterPartitionSystem
size_t mStepsAfterPartitionSystem
Definition: CHybridMethod.h:578
CHybridMethod::mStepsize
C_FLOAT64 mStepsize
Definition: CHybridMethod.h:583
CHybridMethod::updatePriorityQueue
void updatePriorityQueue(size_t rIndex, C_FLOAT64 time)
Definition: CHybridMethod.cpp:625
CHybridMethod::mPartitioningInterval
unsigned C_INT32 mPartitioningInterval
Definition: CHybridMethod.h:573
C_FLOAT64
#define C_FLOAT64
Definition: copasi.h:92
CHybridMethod::fireReaction
void fireReaction(size_t rIndex)
Definition: CHybridMethod.cpp:588

Friends And Related Function Documentation

CHybridMethod* CHybridMethod::createHybridMethod ( )
friend
The documentation for this class was generated from the following files:
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