COPASI API  4.40.278
Functions
SEDMLImporter.cpp File Reference
#include <iostream>
#include <vector>
#include <string>
#include <sstream>
#include <map>
#include <limits>
#include <cmath>
#include <algorithm>
#include <sedml/SedTypes.h>
#include <sbml/math/FormulaFormatter.h>
#include "copasi/copasi.h"
#include "copasi/report/CKeyFactory.h"
#include "copasi/model/CModel.h"
#include "copasi/model/CCompartment.h"
#include "copasi/model/CMetab.h"
#include "copasi/model/CReaction.h"
#include "copasi/model/CModelValue.h"
#include "copasi/model/CEvent.h"
#include "copasi/function/CNodeK.h"
#include "copasi/function/CFunctionDB.h"
#include "copasi/function/CEvaluationTree.h"
#include "copasi/function/CExpression.h"
#include "copasi/function/CFunctionParameters.h"
#include "copasi/core/CDataObjectReference.h"
#include "copasi/utilities/CCopasiTree.h"
#include "copasi/utilities/CNodeIterator.h"
#include "copasi/CopasiDataModel/CDataModel.h"
#include "copasi/core/CRootContainer.h"
#include "copasi/MIRIAM/CRDFGraphConverter.h"
#include "copasi/compareExpressions/CEvaluationNodeNormalizer.h"
#include "copasi/commandline/CLocaleString.h"
#include "copasi/commandline/COptions.h"
#include "copasi/utilities/CProcessReport.h"
#include "copasi/utilities/CTaskFactory.h"
#include "copasi/commandline/CConfigurationFile.h"
#include "copasi/utilities/CCopasiMessage.h"
#include "copasi/trajectory/CTrajectoryTask.h"
#include "copasi/trajectory/CTrajectoryProblem.h"
#include "copasi/sbml/SBMLImporter.h"
#include "copasi/utilities/CDirEntry.h"
#include "copasi/utilities/CCopasiException.h"
#include "copasi/utilities/CCopasiTask.h"
#include "copasi/plot/COutputDefinitionVector.h"
#include "copasi/plot/CPlotSpecification.h"
#include "copasi/report/CReportDefinitionVector.h"
#include <copasi/steadystate/CSteadyStateTask.h>
#include <copasi/scan/CScanTask.h>
#include "SEDMLImporter.h"
#include "SEDMLUtils.h"

Functions

bool applyAttributeChange (CModel *pCopasiModel, CModelParameterSet &set, const std::string &target, const std::string &newValue)
 
bool applyValueToParameterSet (CModelParameterSet &set, CDataObject *obj, double newValue)
 
CTaskEnum::Method getMethodType (const std::string &kisaoId)
 
bool isScan (const SedRepeatedTask *task)
 
bool isScan (const SedTask *task)
 
bool isTC (const SedTask *task)
 

Function Documentation

◆ applyAttributeChange()

bool applyAttributeChange ( CModel *  pCopasiModel,
CModelParameterSet &  set,
const std::string &  target,
const std::string &  newValue 
)

References applyValueToParameterSet(), CDataObject::getObjectParent(), and SEDMLUtils::resolveXPath().

Referenced by SEDMLImporter::importModel().

◆ applyValueToParameterSet()

bool applyValueToParameterSet ( CModelParameterSet &  set,
CDataObject *  obj,
double  newValue 
)

References CCore::Concentration, CDataObject::getCN(), and CModelParameterSet::getModelParameter().

Referenced by applyAttributeChange().

◆ getMethodType()

CTaskEnum::Method getMethodType ( const std::string &  kisaoId)

References CTaskEnum::adaptiveSA, CTaskEnum::deterministic, CTaskEnum::directMethod, CTaskEnum::hybrid, CTaskEnum::hybridLSODA, CTaskEnum::hybridODE45, CTaskEnum::RADAU5, SEDML_KISAO_STOCHASTIC, CTaskEnum::stochastic, CTaskEnum::stochasticRunkeKuttaRI5, CTaskEnum::tauLeap, and CCopasiMessage::WARNING.

Referenced by SEDMLImporter::applyAlgorithm().

◆ isScan() [1/2]

bool isScan ( const SedRepeatedTask *  task)

References isScan().

◆ isScan() [2/2]

bool isScan ( const SedTask *  task)

Referenced by SEDMLImporter::importReport(), and isScan().

◆ isTC()

bool isTC ( const SedTask *  task)

Referenced by SEDMLImporter::importReport().