COPASI API
4.16.103
|
#include <iostream>
#include <vector>
#include <string>
#include <sstream>
#include <map>
#include <limits>
#include <cmath>
#include <algorithm>
#include <sedml/SedTypes.h>
#include <sbml/math/FormulaFormatter.h>
#include "copasi.h"
#include "report/CKeyFactory.h"
#include "model/CModel.h"
#include "model/CCompartment.h"
#include "model/CMetab.h"
#include "model/CReaction.h"
#include "model/CModelValue.h"
#include "model/CEvent.h"
#include "function/CNodeK.h"
#include "function/CFunctionDB.h"
#include "function/CEvaluationTree.h"
#include "function/CExpression.h"
#include "function/CFunctionParameters.h"
#include "report/CCopasiObjectReference.h"
#include "utilities/CCopasiTree.h"
#include "utilities/CNodeIterator.h"
#include "CopasiDataModel/CCopasiDataModel.h"
#include "report/CCopasiRootContainer.h"
#include "MIRIAM/CRDFGraphConverter.h"
#include "compareExpressions/CEvaluationNodeNormalizer.h"
#include "commandline/CLocaleString.h"
#include "commandline/COptions.h"
#include "utilities/CProcessReport.h"
#include "copasi/commandline/CConfigurationFile.h"
#include "utilities/CCopasiMessage.h"
#include "trajectory/CTrajectoryTask.h"
#include "trajectory/CTrajectoryProblem.h"
#include "sbml/SBMLImporter.h"
#include "utilities/CDirEntry.h"
#include "utilities/CCopasiException.h"
#include "utilities/CCopasiTask.h"
#include "plot/COutputDefinitionVector.h"
#include "plot/CPlotSpecification.h"
#include "report/CReportDefinitionVector.h"
#include <steadystate/CSteadyStateTask.h>
#include <scan/CScanTask.h>
#include "SEDMLImporter.h"
#include "SEDMLUtils.h"
Go to the source code of this file.
Functions | |
bool | applyAttributeChange (CModel *pCopasiModel, CModelParameterSet &set, const std::string &target, const std::string &newValue) |
bool | applyValueToModelParameter (CModelParameter *modelParameter, CCopasiObject *obj, double newValue) |
bool | applyValueToParameterSet (CModelParameterSet &set, CCopasiObject *obj, double newValue) |
bool | isScan (const SedTask *task) |
bool | isScan (const SedRepeatedTask *task) |
bool | isTC (const SedTask *task) |
bool applyAttributeChange | ( | CModel * | pCopasiModel, |
CModelParameterSet & | set, | ||
const std::string & | target, | ||
const std::string & | newValue | ||
) |
Definition at line 787 of file SEDMLImporter.cpp.
References applyValueToParameterSet(), CCopasiObject::getObjectParent(), and SEDMLUtils::resolveXPath().
Referenced by SEDMLImporter::importFirstSBMLModel().
bool applyValueToModelParameter | ( | CModelParameter * | modelParameter, |
CCopasiObject * | obj, | ||
double | newValue | ||
) |
Definition at line 746 of file SEDMLImporter.cpp.
References CModelParameter::Concentration, CModelParameter::getChild(), CModelParameter::getCN(), CCopasiObject::getCN(), CModelParameter::getNumChildren(), and CModelParameter::setValue().
Referenced by applyValueToParameterSet().
bool applyValueToParameterSet | ( | CModelParameterSet & | set, |
CCopasiObject * | obj, | ||
double | newValue | ||
) |
Definition at line 772 of file SEDMLImporter.cpp.
References applyValueToModelParameter(), CModelParameterGroup::begin(), and CModelParameterGroup::end().
Referenced by applyAttributeChange().
bool isScan | ( | const SedTask * | task | ) |
Definition at line 184 of file SEDMLImporter.cpp.
Referenced by isScan(), and SEDMLImporter::readListOfPlotsFromSedMLOutput().
bool isScan | ( | const SedRepeatedTask * | task | ) |
bool isTC | ( | const SedTask * | task | ) |
Definition at line 166 of file SEDMLImporter.cpp.
Referenced by SEDMLImporter::readListOfPlotsFromSedMLOutput().