- d -
- CCopasiDataModel()
: CCopasiDataModel
- CData()
: CCopasiDataModel::CData
- CDataColumn()
: CExperimentObjectMap::CDataColumn
- CDataEntity()
: CDataEntity
- CDataModelRenameHandler()
: CDataModelRenameHandler
- CDecisionVector()
: CKeyFactory::CDecisionVector
- CDefaultOutputDescription()
: CDefaultOutputDescription
- CDependencyGraph()
: CDependencyGraph
- CDependencyGraphNode()
: CDependencyGraphNode
- CDependentNumberReference()
: CDependentNumberReference
- CDescription()
: CCopasiTask::CDescription
- CDimension()
: CDimension
- CDotOutput()
: CDotOutput
- data()
: CQBaseDataModel
, CQBiologicalDescriptionDM
, CQBrowserPaneDM
, CQCompartmentDM
, CQCreatorDM
, CQEFMNetReactionDM
, CQEFMReactionDM
, CQEFMSpeciesDM
, CQEventDM
, CQFluxModeDM
, CQFunctionDM
, CQGlobalQuantityDM
, CQLayoutsDM
, CQModifiedDM
, CQParameterOverviewDM
, CQParameterSetsDM
, CQPlotDM
, CQReactionDM
, CQReferenceDM
, CQReportDM
, CQSpecieDM
, CQTimeSeriesDM
- dataChanged()
: CQCompartmentsWidget
, CQEventsWidget
, CQFunctionsWidget
, CQGlobalQuantitiesWidget
, CQLayoutsWidget
, CQMiriamWidget
, CQParameterSetsWidget
, CQPlotsWidget
, CQReactionsWidget
, CQReportsWidget
, CQSpeciesWidget
- DataModelGUI()
: DataModelGUI
- DBL()
: CCopasiXMLInterface::DBL
- debug()
: FlexLexer
- debugOutput()
: CSBMLunitInterface
- decomposeJacobian()
: CSSAMethod
- deepCopy()
: CCopasiVector< T >
- defaultHandler()
: CExpatTemplate< CType >
- DefaultPlotDialog()
: DefaultPlotDialog
- del()
: CUpDownSubwidget
- delayAssignment()
: CMathEvent
- delDuplicate()
: ObjectList
- deleteAssignment()
: CEvent
- deleteChildren()
: CCopasiNode< _Data >
- deleteClicked()
: CQTabWidget
- deleteCopasiModel()
: SBMLImporter
, SEDMLImporter
- deleteCurrentHandler()
: CXMLElementHandler< CType, CCommon >
- deleteCurve()
: CQPlotSubwidget
- deleteCurves()
: CQPlotSubwidget
- deleteInvalidSliders()
: SliderDialog
- deleteLayoutWindows()
: CQLayoutsWidget
- deleteOldData()
: CCopasiDataModel
- deletePlot()
: CQPlotSubwidget
- deleteSelected()
: CQParameterSetsWidget
- deleteSelectedAuthors()
: CQMiriamWidget
- deleteSelectedBiologicalDescriptions()
: CQMiriamWidget
- deleteSelectedCompartments()
: CQCompartmentsWidget
- deleteSelectedEvents()
: CQEventsWidget
- deleteSelectedFunctions()
: CQFunctionsWidget
- deleteSelectedGlobalQuantities()
: CQGlobalQuantitiesWidget
- deleteSelectedLayouts()
: CQLayoutsWidget
- deleteSelectedModifieds()
: CQMiriamWidget
- deleteSelectedPlots()
: CQPlotsWidget
- deleteSelectedReactions()
: CQReactionsWidget
- deleteSelectedReferences()
: CQMiriamWidget
- deleteSelectedReports()
: CQReportsWidget
- deleteSelectedSpecies()
: CQSpeciesWidget
- deleteSlider()
: SliderDialog
- deleteValue()
: CCopasiParameter
- dependentNumber()
: CMoiety
- dependsOn()
: CCopasiObject
, CFunction
, CMassAction
- dependsOnTree()
: CEvaluationTree
- deregisterListView()
: DataModelGUI
- deriveBranch()
: CDerive
- descentLine()
: COptMethodSteepestDescent
- destroy()
: CCopasiRootContainer
, CExpatTemplate< CType >
, CQCompartment
, CQCrossSectionTaskWidget
, CQExperimentData
, CQFittingItemWidget
, CQFittingWidget
, CQModelValue
, CQMoietiesTaskWidget
, CQOptimizationWidget
, CQProgressItemBar
, CQTrajectoryWidget
, CQTSSAWidget
- destroy_buffers()
: CQGLLayoutPainter
- destroyBucket()
: ObjectList
- destroyEventId()
: CProcessQueue
- destroyRootMask()
: CLsodaMethod
- destroyUnreferencedNode()
: CRDFGraph
- detachNode()
: CCopasiTree< _Node >
- determineCorrectObjectForSlider()
: SliderDialog
- determineDiscrete()
: CMathTrigger::CRootFinder
- determineInitialRoots()
: CMathModel
- determineIsAutonomous()
: CModel
- determineStochasticSpecies()
: CTrajectoryMethodDsaLsodar::CPartition
- determineUnits()
: CSBMLunitInterface
- determineVersion()
: CCellDesignerImporter
- deuflhard()
: CILDMMethod
- deuflhard_metab()
: CILDMModifiedMethod
- diag()
: CSSAMethod
- diff()
: CModelParameter
, CModelParameterGroup
- diffData()
: CQParameterOverviewDM
- dimensionality()
: CArrayAnnotation
, CCopasiAbstractArray
, CCopasiArray
, CCopasiMatrixInterface< CMatrixType >
, CCopasiVectorInterface< VectorType >
- dintdy_()
: CInternalSolver
- directionToEnum()
: CCellDesignerImporter
- dirName()
: CDirEntry
- disableBarChart()
: CQArrayAnnotationsWidget
- disableModeChoice()
: CQParaPanel
- disableObjectChoosing()
: SliderSettingsDialog
- disableParameterChoice()
: CQParaPanel
- disableSlider()
: CQArrayAnnotationsWidget
- disableSliders()
: CopasiUI3Window
- disableStepNumberChoice()
: CQParaPanel
- discardOldResults()
: CQTSSAResultSubWidget
- disownSBMLDocument()
: CSBMLExporter
- displayResult()
: CQTSSAResultSubWidget
- distance()
: CCellDesignerImporter
, CCopasiSpringLayout
, CLLayoutRenderer
- distancePointLineSegment()
: CLLayoutRenderer
- divergenceRequested()
: CLyapProblem
- divide()
: CNormalSum
- divideByObject()
: SBMLImporter
- do_collapsing()
: CSensMethod
- do_collapsing_innerloop()
: CSensMethod
- do_scaling()
: CSensMethod
- do_target_calculation()
: CSensMethod
- do_variation()
: CSensMethod
- doColumnPivot()
: CLinkMatrix
- documentChanged()
: CQGLLayoutPainter
, CQGLLayoutViewer
- doesExist()
: CMetabNameInterface
- doIntegration()
: CNewtonMethod
- doInverseInterpolation()
: CHybridMethodODE45
- doJacobian()
: CSteadyStateMethod
- doMapping()
: SBMLImporter
- done()
: CQAutolayoutWizard
, CQProgressDialog
- doNewtonStep()
: CNewtonMethod
- doRowPivot()
: CLinkMatrix
- doSingleSSAStep()
: CTrajAdaptiveSA
- doSingleStep()
: CHybridMethod
, CHybridMethodLSODA
, CHybridMethodODE45
, CHybridNextReactionLSODAMethod
, CHybridNextReactionRKMethod
, CStochDirectMethod
, CStochMethod
, CStochNextReactionMethod
, CTauLeapMethod
, CTrajectoryMethodDsaLsodar
- doSingleTauLeapStep()
: CTrajAdaptiveSA
- dot()
: CLPoint
- DoubleLine()
: DoubleLine
- down()
: CUpDownSubwidget
- dprja_()
: CInternalSolver
- dr250()
: Cr250
- dragEnterEvent()
: CopasiUI3Window
- draw()
: Bar
, CQCopasiEffect
, CQGLLayoutPainter
, CQGLNetworkPainter
, Label3D
- draw_bitmap()
: CQGLLayoutPainter
- draw_cap()
: CLLayoutRenderer
- draw_curve()
: CLLayoutRenderer
- draw_datapoints()
: CLLayoutRenderer
- draw_ellipse()
: CLLayoutRenderer
- draw_group()
: CLLayoutRenderer
- draw_image()
: CLLayoutRenderer
- draw_layout()
: CLLayoutRenderer
- draw_line()
: CLLayoutRenderer
- draw_line_segment()
: CLLayoutRenderer
- draw_object()
: CLLayoutRenderer
- draw_polygon()
: CLLayoutRenderer
- draw_rectangle()
: CLLayoutRenderer
- draw_selection_box()
: CLLayoutRenderer
- draw_text()
: CLLayoutRenderer
- drawArrow()
: CQGLNetworkPainter
- drawBegin()
: Bar
- drawColorLegend()
: CQGLNetworkPainter
- drawCurve()
: C2DPlotCurve
- drawEdge()
: CQGLNetworkPainter
- drawEnd()
: Bar
- drawGraph()
: CQGLNetworkPainter
- drawNode()
: CQGLNetworkPainter
- drawSelectionBox()
: CLLayoutRenderer
- drawStringAt()
: CQGLNetworkPainter
- drawSymbols()
: C2DPlotCurve
- drawZero()
: Bar
- drchek_()
: CInternalSolver
- droots_()
: CInternalSolver
- drop()
: CSBMLunitInterface::CEnvironmentInformation
- dropEvent()
: CopasiUI3Window
, CQExpressionWidget
- dsolsy_()
: CInternalSolver
- dstoda_()
: CInternalSolver
- dumpData()
: CGA
- duplicate()
: CModelExpansion
- duplicateCompartment()
: CModelExpansion
- duplicateEvent()
: CModelExpansion
- duplicateGlobalQuantity()
: CModelExpansion
- duplicateMetab()
: CModelExpansion
- duplicateReaction()
: CModelExpansion