CCopasiContainer::add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | virtual |
CModelParameterGroup::add(const CModelParameter::Type &type) | CModelParameterGroup | |
CModelParameterGroup::add(CModelParameter *pModelParameter) | CModelParameterGroup | |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
addUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | inlineprotected |
Array enum value | CCopasiObject | protected |
assignGroupContent(const CModelParameterGroup &src, const bool &createMissing) | CModelParameterGroup | protected |
assignSetContent(const CModelParameterSet &src, const bool &createMissing) | CModelParameterSet | |
begin() | CModelParameterGroup | |
begin() const | CModelParameterGroup | |
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) | CCopasiObject | static |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
castObject(CCopasiObject *pObject) | CAnnotation | static |
castObject(const CCopasiObject *pObject) | CAnnotation | static |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | protected |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | protected |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
clear() | CModelParameterGroup | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CModelParameter(CModelParameterGroup *pParent, const CModelParameter::Type &type) | CModelParameter | |
CModelParameter(const CModelParameter &src, CModelParameterGroup *pParent) | CModelParameter | |
CModelParameterGroup(CModelParameterGroup *pParent, const CModelParameter::Type &type=CModelParameter::Group) | CModelParameterGroup | |
CModelParameterGroup(const CModelParameterGroup &src, CModelParameterGroup *pParent, const bool &createMissing) | CModelParameterGroup | |
CModelParameterSet(const std::string &name, const CCopasiContainer *pParent=NULL) | CModelParameterSet | |
CModelParameterSet(const CModelParameterSet &src, const CCopasiContainer *pParent, const bool &createMissing=false) | CModelParameterSet | |
CObjectInterface() | CObjectInterface | inline |
CompareResult enum name | CModelParameter | |
compareWithModel(const CModelParameter::Framework &framework) | CModelParameterSet | |
Compartment enum value | CModelParameter | |
compile() | CModelParameterGroup | virtual |
Concentration enum value | CModelParameter | |
Conflict enum value | CModelParameter | |
const_iterator typedef | CModelParameterGroup | |
Container enum value | CCopasiObject | protected |
copy(const CModelParameter &src, const bool &createMissing) | CModelParameterGroup | protected |
createFromModel() | CModelParameterSet | |
DataModel enum value | CCopasiObject | protected |
DataObjectSet typedef | CCopasiObject | |
DataUpdateSequence typedef | CCopasiObject | |
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | |
diff(const CModelParameter &other, const CModelParameter::Framework &framework, const bool &createMissing=false) | CModelParameterGroup | virtual |
EmptyList | CCopasiContainer | static |
end() | CModelParameterGroup | |
end() const | CModelParameterGroup | |
Flag enum name | CCopasiObject | protected |
Framework enum name | CModelParameter | |
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const | CCopasiObject | |
getChild(const size_t &index) const | CModelParameterGroup | virtual |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | virtual |
CCopasiContainer::getCN() const | CCopasiObject | virtual |
CModelParameterGroup::getCN() const | CModelParameter | |
getCompareResult() const | CModelParameter | |
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const | CCopasiObject | virtual |
getIndex() const | CModelParameter | |
getInitialExpression() const | CModelParameter | |
getInitialExpressionPtr() const | CModelParameter | |
getKey() const | CModelParameterSet | virtual |
getMiriamAnnotation() const | CAnnotation | |
getModel() const | CModelParameterSet | |
getModelParameter(const std::string &cn) const | CModelParameterGroup | |
getModelParameter(const std::string &name, const CModelParameter::Type &type) const | CModelParameterGroup | |
getName() const | CModelParameterSet | virtual |
getNotes() const | CAnnotation | |
getNumChildren() const | CModelParameterGroup | virtual |
CCopasiContainer::getObject(const CCopasiObjectName &cn) const | CCopasiContainer | virtual |
CModelParameterGroup::getObject() const | CModelParameter | |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | virtual |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | virtual |
getObjectType() const | CCopasiObject | |
getParent() const | CModelParameter | |
getPrerequisites() const | CCopasiObject | virtual |
getRefresh() const | CCopasiObject | virtual |
getSet() const | CModelParameter | |
getSimulationType() const | CModelParameter | |
getType() const | CModelParameter | |
getUnit(const Framework &framework) const | CModelParameter | |
getUnits() const | CCopasiContainer | virtual |
getUnsupportedAnnotations() | CAnnotation | |
getUnsupportedAnnotations() const | CAnnotation | |
getUpdateMethod() const | CCopasiObject | |
getValue(const Framework &framework) const | CModelParameter | virtual |
getValueObject() const | CCopasiContainer | virtual |
getValuePointer() const | CCopasiObject | virtual |
Group enum value | CModelParameter | |
Gui enum value | CCopasiObject | protected |
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
Identical enum value | CModelParameter | |
initObjects() | CCopasiContainer | protected |
isActive() const | CModelParameterSet | |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isInitialExpressionValid() const | CModelParameter | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const | CCopasiObject | virtual |
isReadOnly() const | CModelParameter | |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueInt64() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
iterator typedef | CModelParameterGroup | |
Matrix enum value | CCopasiObject | protected |
mCN | CModelParameter | protected |
mCompareResult | CModelParameter | protected |
mIsInitialExpressionValid | CModelParameter | protected |
Missing enum value | CModelParameter | |
mKey | CModelParameterSet | private |
mObjects | CCopasiContainer | protected |
Model enum value | CModelParameter | |
ModelEntity enum value | CCopasiObject | protected |
ModelValue enum value | CModelParameter | |
Modified enum value | CModelParameter | |
mpInitialExpression | CModelParameter | protected |
mpModel | CModelParameterSet | private |
mpObject | CModelParameter | protected |
mpParent | CModelParameter | protected |
mSimulationType | CModelParameter | protected |
mType | CModelParameter | protected |
mustBeDeleted(const DataObjectSet &deletedObjects) const | CCopasiObject | virtual |
mValue | CModelParameter | protected |
nameFromCN(const CCopasiObjectName &cn) | CModelParameter | protectedstatic |
NameVector enum value | CCopasiObject | protected |
NonUniqueName enum value | CCopasiObject | protected |
objectMap typedef | CCopasiContainer | |
ObjectSet typedef | CObjectInterface | |
Obsolete enum value | CModelParameter | |
operator==(const CAnnotation &rhs) const | CAnnotation | |
ParticleNumbers enum value | CModelParameter | |
print(std::ostream *ostream) const | CCopasiObject | virtual |
Reaction enum value | CModelParameter | |
ReactionParameter enum value | CModelParameter | |
Reference enum value | CCopasiObject | protected |
refreshFromModel(const bool &modifyExistence) | CModelParameterGroup | virtual |
CCopasiContainer::remove(CCopasiObject *pObject) | CCopasiContainer | virtual |
CModelParameterGroup::remove(CModelParameter *pModelParameter) | CModelParameterGroup | |
CModelParameterGroup::remove(const size_t &index) | CModelParameterGroup | |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
removeUnsupportedAnnotation(const std::string &name) | CAnnotation | |
replaceUnsupportedAnnotation(const std::string &name, const std::string &xml) | CAnnotation | |
Root enum value | CCopasiObject | protected |
saveToStream(std::ostream &os, const CModelParameter::Framework &framework, const std::string &mode, const std::string &separator) | CModelParameterSet | |
Separator enum value | CCopasiObject | protected |
Set enum value | CModelParameter | |
setCN(const CCopasiObjectName &cn) | CModelParameter | virtual |
setCompareResult(const CompareResult &compareResult) | CModelParameter | |
setDirectDependencies(const DataObjectSet &directDependencies) | CCopasiObject | |
setInitialExpression(const std::string &initialExpression) | CModelParameter | |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setModel(const CModel *pModel) | CModelParameterSet | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CModelParameterSet | virtual |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setParent(CModelParameterGroup *pParent) | CModelParameter | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | inline |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | inlinestatic |
setSimulationType(const CModelEntity::Status &simulationType) | CModelParameter | |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | inline |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | inline |
setValue(const double &value, const Framework &framework) | CModelParameter | virtual |
size() const | CModelParameterGroup | |
smpRenameHandler | CCopasiObject | protectedstatic |
Species enum value | CModelParameter | |
StaticString enum value | CCopasiObject | protected |
Type enum name | CModelParameter | |
TypeNames | CModelParameter | static |
unknown enum value | CModelParameter | |
UnsupportedAnnotation typedef | CAnnotation | |
updateModel() | CModelParameterSet | virtual |
UpdateSequence typedef | CObjectInterface | |
ValueBool enum value | CCopasiObject | protected |
ValueDbl enum value | CCopasiObject | protected |
ValueInt enum value | CCopasiObject | protected |
ValueInt64 enum value | CCopasiObject | protected |
ValueString enum value | CCopasiObject | protected |
Vector enum value | CCopasiObject | protected |
~CAnnotation() | CAnnotation | virtual |
~CCopasiContainer() | CCopasiContainer | virtual |
~CCopasiObject() | CCopasiObject | virtual |
~CModelParameter() | CModelParameter | virtual |
~CModelParameterGroup() | CModelParameterGroup | virtual |
~CModelParameterSet() | CModelParameterSet | virtual |
~CObjectInterface() | CObjectInterface | inlinevirtual |