Here is a list of all class members with links to the classes they belong to:
- r -
- CCopasiReportSeparator()
: CCopasiReportSeparator
- CCopasiRootContainer()
: CCopasiRootContainer
- Cr250()
: Cr250
- CRandom()
: CRandom
- CRandom::createGenerator
: Cmt19937
, Cmt19937HR
, Cr250
- CRandomSearch()
: CRandomSearch
- CRandomSearchMaster()
: CRandomSearchMaster
- CRaptorInit()
: CRaptorInit
- CRDFGraph()
: CRDFGraph
- CRDFLiteral()
: CRDFLiteral
- CRDFNode()
: CRDFNode
- CRDFNode::addTripletToGraph
: CRDFGraph
- CRDFNode::removeTripletFromGraph
: CRDFGraph
- CRDFObject()
: CRDFObject
- CRDFParser()
: CRDFParser
- CRDFPredicate()
: CRDFPredicate
- CRDFSubject()
: CRDFSubject
- CRDFTriplet()
: CRDFTriplet
- CRDFUtilities()
: CRDFUtilities
- CRDFWriter()
: CRDFWriter
- CReaction()
: CReaction
- CReactionDependencies()
: CStochDirectMethod::CReactionDependencies
, CTauLeapMethod::CReactionDependencies
, CTrajAdaptiveSA::CReactionDependencies
, CTrajectoryMethodDsaLsodar::CReactionDependencies
- CReactionInterface()
: CReactionInterface
- CReadConfig()
: CReadConfig
- CRealProblem()
: CRealProblem
- CRecentFiles()
: CRecentFiles
- CReference()
: CReference
- CRegisteredObjectName()
: CRegisteredObjectName
- CReport()
: CReport
- CReportBody()
: CReportBody
- CReportDefinition()
: CReportDefinition
- CReportDefinitionVector()
: CReportDefinitionVector
- CReportTable()
: CReportTable
- CResult()
: CCopasiTask::CResult
- CRoot()
: CMathEventN::CTrigger::CRoot
- CRootFinder()
: CMathTrigger::CRootFinder
- CrossPoint
: COptMethodEP2
, COptMethodHGASA
- CrossSection
: CSensProblem
- r
: complex
, doublecomplex
, Multitype
- r250()
: Cr250
, CRandom
- r250n()
: Cr250
- RadialGradient
: CCopasiXMLParser::RadialGradientElement
- RadialGradientElement()
: CCopasiXMLParser::RadialGradientElement
- radius_
: Bar
- randfile
: soap
- RANDOM
: CQStartValueReset
- randomize()
: CCopasiSpringLayout
, COptMethodSS
- randomizeLayout()
: CQLayoutThread
, CQNewMainWindow
- randomizeStartValues()
: COptProblem
- RandomSearch
: CCopasiMethod
- RandomSearchMaster
: CCopasiMethod
- range
: CProcessQueue
- Rate
: CMath
- ratio
: dlsa01
- RATIONALE
: CEvaluationNodeNumber
- RAW
: CCopasiMessage
- RAW_FILTERED
: CCopasiMessage
- rc
: dls001
- RDF
: CCopasiXMLParser::MiriamAnnotationElement
- rdf__n
: CRDFPredicate
- rdf_li
: CRDFPredicate
- rdf_object
: CRDFPredicate
- rdf_predicate
: CRDFPredicate
- rdf_subject
: CRDFPredicate
- rdf_type
: CRDFPredicate
- rdum3
: dlsr01
- reachedStdDeviation()
: COptMethodPS
- ReactantLink()
: ReactantLink
- Reaction
: CCopasiXMLParser::ListOfReactionsElement
, CCopasiXMLParser::ReactionElement
, CMath
, CModelParameter
- REACTION
: ListViews
- REACTION_2V
: CCopasiSpringLayout::UpdateAction
- REACTION_CONC_FLUXES
: CObjectLists
- REACTION_GLYPH
: CQNewMainWindow
- REACTION_METAB_CONCENTRATIONS
: CObjectLists
- REACTION_METAB_NUMBERS
: CObjectLists
- REACTION_PART_FLUXES
: CObjectLists
- REACTION_SELECTION_BITS
: CQNewMainWindow
- ReactionAnnotation()
: ReactionAnnotation
- ReactionElement()
: CCopasiXMLParser::ReactionElement
- ReactionGlyph
: CCopasiXMLParser::ListOfReactionGlyphsElement
, CCopasiXMLParser::ReactionGlyphElement
- ReactionGlyphElement()
: CCopasiXMLParser::ReactionGlyphElement
- reactionInvolvesCompartment()
: CModelAdd
- ReactionModification()
: ReactionModification
- reactionModifier
: CQIconResource
- ReactionParameter
: CModelParameter
- reactionProduct
: CQIconResource
- ReactionResult()
: CModelAnalyzer::ReactionResult
- REACTIONS
: CModelEntity
, CObjectLists
- reactionSubstrate
: CQIconResource
- reactionsWidget1
: ListViews
- ReactionsWidget1()
: ReactionsWidget1
- reactionTypeToEnum()
: CCellDesignerImporter
- read()
: CExperiment
- readColumnNames()
: CExperiment
- readIntoSet()
: CLStyle
- readLine()
: CTableRow
- readListOfLayouts()
: SBMLDocumentLoader
- readListOfPlotsFromSedMLOutput()
: SEDMLImporter
- ReadOnly
: CRDFPredicate::sAllowedLocation
- readSBML()
: SBMLImporter
- readSEDML()
: SEDMLImporter
- reallocated()
: C2DCurveData
, CBandedGraphData
, CHistoCurveData
- reallocatedData()
: C2DPlotCurve
- RecordingActivityName
: CPlotItem
- recordReset()
: CInterpolation
- recordState()
: CInterpolation
- recreate()
: CQLayoutScene
- recreateNeeded()
: CQLayoutScene
- Rectangle
: CCopasiXMLParser::RectangleElement
- RECTANGLE
: CQGLNetworkPainter
- RectangleElement()
: CCopasiXMLParser::RectangleElement
- recursion()
: CSBMLunitInterface
- RECURSION_LIMIT
: CNormalTranslation
- recursion_limit_exception()
: recursion_limit_exception
- recursionDivide()
: CSBMLunitInterface
- recursionEqual()
: CSBMLunitInterface
- recursionPiecewise()
: CSBMLunitInterface
- recursionPower()
: CSBMLunitInterface
- recursionTimes()
: CSBMLunitInterface
- Recursive
: CMathDependencyNodeIterator
- recv_timeout
: soap
- recvfd
: soap
- reDimensionalize()
: CArrayAnnotation
- redrawNow()
: CQNewMainWindow
- reduce()
: CTableauLine
- REDUCED_JACOBIAN_EV_IM
: CObjectLists
- REDUCED_JACOBIAN_EV_RE
: CObjectLists
- Reference
: CCopasiObject
- referenceList
: CBrowserObject
- referenceType
: CCopasiMatrixReference< CType >
, CCopasiObject
, CCopasiObjectReference< CType >
, CCopasiVectorReference< CType >
- REFLECT
: CLGradientBase
- refresh()
: CCopasiTimer
, CExpression
, COutputHandler
- Refresh()
: Refresh
- refreshActiveParameterSet()
: CModel
- refreshAmount()
: CMoiety
- refreshCompartments()
: CQSpeciesWidget
- refreshConcentration()
: CMetab
- refreshConcentrationRate()
: CMetab
- refreshDependentNumber()
: CMoiety
- refreshFromModel()
: CModelParameter
, CModelParameterGroup
- refreshInitialConcentration()
: CMetab
- refreshInitialValue()
: CMetab
, CModelEntity
, CMoiety
- refreshInitialValues()
: DataModelGUI
- refreshList
: ObjectBrowserWidget
- refreshNumber()
: CMetab
- refreshRate()
: CMetab
- refreshRecentFileMenu()
: CopasiUI3Window
- refreshRecentSBMLFileMenu()
: CopasiUI3Window
- RefreshTemplate()
: RefreshTemplate< CClass >
- refreshText()
: CQReportListItem
- refreshTransitionTime()
: CMetab
- refreshValue()
: CMoiety
- refreshWindowsMenu()
: CopasiUI3Window
- registerListView()
: DataModelGUI
- registerMethods()
: Copasi2SBMLTranslator
- regularTimer
: CQGLNetworkPainter
- reject()
: CQProgressDialog
, CQReportDefinitionSelect
- relativeDifferenceOfStates()
: CCrossSectionTask
- rememberStartValue()
: COptItem
- rememberStartValues()
: COptProblem
- remove()
: CCopasiContainer
, CCopasiVector< T >
, CCopasiVectorN< CType >
, CDirEntry
, CFunctionParameters
, CKeyFactory::HashTable
, CKeyFactory
, CModelParameterGroup
, CNormalLcm
, CNormalProduct
, CQBrowserPaneDM
, CSparseMatrix
, CStateTemplate
- removeBiologicalDescription()
: CMIRIAMInfo
- removeCallParameter()
: CFunctionParameterMap
- removeCharactersFromString()
: SEDMLUtils
- removeChild()
: CCopasiNode< _Data >
, CEvaluationNodeCall
, ConverterASTNode
- removeColorDefinition()
: CLRenderInformationBase
- removeColumn()
: CStepMatrix
- removeCompartment()
: CModel
- removeCOPASIkey()
: SBMLReference
- removeCreator()
: CMIRIAMInfo
- removeCrossValidation()
: CFitItem
- removeCurve()
: CQPlotSubwidget
- removeCurveElement()
: CLRenderCurve
- removeDatamodel()
: CCopasiRootContainer
- removeDependentModelObjects()
: CModel
- removeDeterministicReaction()
: CHybridMethod
, CHybridMethodLSODA
- removeDirectDependency()
: CCopasiObject
- removeDuplicate()
: ObjectBrowserWidget
- removeEdge()
: CRDFNode
- removeElement()
: CLPolygon
- removeEmptyNodes()
: CRDFGraph
- removeEmptySubTree()
: CQSimpleSelectionTree
- removeEvent()
: CCrossSectionTask
, CModel
- removeExperiment()
: CExperimentSet
, CFitItem
- removeFiles()
: CDirEntry
- removeFromHistory()
: CQTaskMethodWidget
- removeFromMainWindow()
: CWindowInterface
- removeFromScene()
: CQCopasiAnimation
, CQEffectDescription
- removeFromSelection()
: CLLayoutRenderer
- removeFunction()
: CFunctionDB
- removeGradientDefinition()
: CLRenderInformationBase
- removeInitialAssignment()
: CSBMLExporter
- removeInterface()
: COutputHandler
, COutputHandlerPlot
- removeInvalidColumns()
: CStepMatrix
- removeItemInAnimation()
: CQLayoutMainWindow
- removeKey()
: CLLocalStyle
- removeLayout()
: CCopasiDataModel
- removeLine()
: CTableauMatrix
- removeLineEnding()
: CLRenderInformationBase
- removeLocalReactionParameter()
: CModel
- removeMapping()
: CReactionInterface
- removeMetabolite()
: CModel
- removeMetaboliteForAnimation()
: CQGLNetworkPainter
- removeModelValue()
: CModel
- removeModification()
: CMIRIAMInfo
- removeNode()
: CCopasiTree< _Node >
- removeOptItem()
: COptProblem
- removeParameter()
: CCopasiParameterGroup
- removePlotSpec()
: COutputDefinitionVector
- removeProgressItem()
: CQProgressDialog
- removeReaction()
: CModel
- removeReference()
: CMIRIAMInfo
- removeReportDefinition()
: CReportDefinitionVector
- removeRole()
: CLStyle
- removeRow()
: CQBaseDataModel
- removeRows()
: CQBaseDataModel
, CQBiologicalDescriptionDM
, CQBrowserPaneDM
, CQCompartmentDM
, CQCreatorDM
, CQEFMNetReactionDM
, CQEFMReactionDM
, CQEFMSpeciesDM
, CQEventDM
, CQFluxModeDM
, CQFunctionDM
, CQGlobalQuantityDM
, CQLayoutsDM
, CQModifiedDM
, CQParameterSetsDM
, CQPlotDM
, CQReactionDM
, CQReferenceDM
, CQReportDM
, CQSpecieDM
, CQTimeSeriesDM
- removeRule()
: CSBMLExporter
- removeSBMLid()
: SBMLReference
- removeSBMLIdFromFunctions()
: CCopasiDataModel
- removeScanItem()
: CScanProblem
- removeSibling()
: CCopasiNode< _Data >
- removeSlider()
: SliderDialog
- removeSpecies()
: CModelParameterCompartment
- removeStochReaction()
: CIndexedPriorityQueue
- removeTriplet()
: CRDFGraph
- removeTripletFromGraph()
: CRDFNode
- removeType()
: CLStyle
- removeUnsupportedAnnotation()
: CAnnotation
- removeUnusedFunctions()
: SBMLImporter
- removeUnusedObjects()
: CSBMLExporter
- removeVariables()
: CSensProblem
- removeWindow()
: CopasiUI3Window
- rename()
: CQBrowserPaneDM
- RENAME
: ListViews
- renameMassActionParameters()
: SBMLImporter
- RenderCurve
: CCopasiXMLParser::RenderCurveElement
- RenderCurveElement()
: CCopasiXMLParser::RenderCurveElement
- renderMarkup
: CQIconResource
- renderMathML
: CQIconResource
- RenderText
: CCopasiXMLParser::TextElement
- reorder()
: CStateTemplate
- reorderNodes()
: CEvaluationNodeNormalizer
- rePartition()
: CTrajectoryMethodDsaLsodar::CPartition
- REPEAT
: CLGradientBase
- replace_delay_nodes()
: SBMLImporter
- replace_local_parameters()
: CSBMLExporter
- replace_name_nodes()
: SBMLImporter
- replace_time_with_initial_time()
: SBMLImporter
- replaceAmountReferences()
: SBMLImporter
- replaceCallNodeNames()
: SBMLImporter
- replaceChild()
: CSBMLExporter
- replaceDiscontinuousNode()
: CMathContainer
- replaceInCompartment()
: CModelExpansion
- replaceInEvent()
: CModelExpansion
- replaceInExpression()
: CModelExpansion
- replaceInMetab()
: CModelExpansion
- replaceInModel()
: CModelExpansion
- replaceInModelEntity()
: CModelExpansion
- replaceInReaction()
: CModelExpansion
- replaceL1IncompatibleNodes()
: CSBMLExporter
- replaceLog()
: SBMLImporter
- replaceLogicOperators()
: CMathMLToTeX
- replaceMathOperators()
: CMathMLToTeX
- replaceObjectNames()
: SBMLImporter
- replaceOtherOperators()
: CMathMLToTeX
- replacePowerFunctionNodes()
: SBMLImporter
- replaceRoot()
: SBMLImporter
- replaceSpeciesReferences()
: CSBMLExporter
- replaceTimeAndAvogadroNodeNames()
: SBMLImporter
- replaceTimeDependentFunctionCalls()
: SBMLImporter
- replaceTimeNodesInFunctionDefinition()
: SBMLImporter
- replaceTrigoOperators()
: CMathMLToTeX
- replaceUnsupportedAnnotation()
: CAnnotation
- replicate()
: CGA
, COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHGASA
, COptMethodSRES
- replot()
: CopasiPlot
- replotSignal()
: CopasiPlot
- REPORT
: CCopasiTask
- Report
: CCopasiXMLParser::BodyElement
, CCopasiXMLParser::FooterElement
, CCopasiXMLParser::HeaderElement
, CCopasiXMLParser::ListOfReportsElement
, CCopasiXMLParser::ReportElement
, CCopasiXMLParser::ReportInstanceElement
, CCopasiXMLParser::TaskElement
- REPORT
: ListViews
- reportBtnClicked()
: TaskWidget
- ReportElement()
: CCopasiXMLParser::ReportElement
- ReportInstanceElement()
: CCopasiXMLParser::ReportInstanceElement
- reportReferenceMap
: SCopasiXMLParserCommon
- rescale()
: ScrollZoomer
- rescaleDataSets()
: CQGLNetworkPainter
- rescaleDataSetsWithNewMinMax()
: CQGLNetworkPainter
- rescaleNode()
: CQGLNetworkPainter
- reset()
: BarColor
, CCopasiXMLParser::ParameterDescriptionElement
, COptProblem
, CProcessReport
, CQProgressItem
, CQProgressItemBar
, CQProgressItemText
, CScanItem
, CXMLElementHandler< CType, CCommon >
, SliderDialog
- resetConstraintViolation()
: CFitConstraint
- resetEvaluations()
: COptProblem
- resetItem()
: CProcessReport
, CProgressBar
- resetKeySpace()
: ObjectBrowserItem
- resetPlot()
: CQPlotSubwidget
- resetRange()
: CSlider
- resetState()
: CInternalSolver
- resetValue()
: CopasiSlider
, CSlider
, SliderDialog
- resetView()
: CQGLLayoutPainter
, CQGLLayoutViewer
, CQGLNetworkPainter
, CQGLViewport
, CQNewMainWindow
- resize()
: CArrayAnnotation
, CCallParameters< Type >
, CCopasiArray
, CCopasiVector< T >
, CDependencyGraph
, CLLayoutRenderer
, CMatrix< CType >
, CSparseMatrix
, CState
, CStateTemplate
, CTableRow
, CVector< CType >
- resizeAllMatrices()
: CLNAMethod
, CMCAMethod
- resizeCoordSys()
: CQBarChart
- resizeCurveData()
: CopasiPlot
- resizeEvent()
: CQGLLayoutViewer
, CQGLViewport
, CScanContainerWidget
- resizeGL()
: CQGLLayoutPainter
, CQGLNetworkPainter
- resizeOneDimension()
: CArrayAnnotation
- resolve_color()
: CLLayoutRenderer
- resolve_text()
: CLLayoutRenderer
- resolveDatagenerator()
: SEDMLUtils
- resolveFunctionName()
: CSBMLunitInterface
- resolveSimultaneousAssignments
: CProcessQueue
- resolveStyle()
: CLRenderResolver
- resolveStyleForKey()
: CLRenderResolver
- resolveStyleForRole()
: CLRenderResolver
- resolveStyleForType()
: CLRenderResolver
- resolveVariableName()
: CSBMLunitInterface
- resolveXPath()
: SEDMLUtils
- RESOURCE
: CRDFObject
, CRDFSubject
- restore()
: CCopasiProblem
, CCopasiTask
, CCrossSectionTask
, CFitProblem
, CLNATask
, CLyapTask
, CMCATask
, CMoietiesTask
, COptProblem
, CScanTask
, CSensMethod
, CSensTask
, CSteadyStateTask
, CTrajectoryTask
, CTSSATask
- restore_current_attributes()
: CLLayoutRenderer
- restore_local_parameters()
: CSBMLExporter
- restoreDeducedRoles()
: CQGLLayoutViewer
- restoreFunctionDB()
: SBMLImporter
, SEDMLImporter
- restoreModel()
: COptProblem
- restoreModelIndependentData()
: CExperiment
- restoreValue()
: CScanItem
- Result()
: CFunctionAnalyzer::Result
, CQCompartmentCopyOptions
, CQStartValueReset
- result
: CSBMLunitInterface::EvaluationResult
- resultAvailable()
: CLyapTask
- resultHasDivergence()
: CLyapTask
- Results
: CQSimpleSelectionTree
- resume()
: CQLayoutThread
- ReturnCode
: CSteadyStateMethod
- returnCurrentTime()
: CTSSAMethod
- returnProcess()
: CSteadyStateMethod
- revalidate()
: CQValidator< Type >
- reverse()
: CChemEqInterface
, CReactionInterface
- reverseChecked()
: ObjectBrowserItem
- revert_curve()
: CLLayoutRenderer
- revertBtnClicked()
: TaskWidget
- revertCurve()
: CQGLLayoutPainter
- revertDeducedRoles()
: CQGLLayoutViewer
- rewind()
: CReadConfig
- RG_createTextureForText()
: CQGLNetworkPainter
- RG_drawStringAt()
: CQGLNetworkPainter
- RGAMMA
: CEvaluationNodeFunction
- rgamma()
: CEvaluationNodeFunction
- right
: CEvaluationNode::CPrecedence
- rightChild()
: CIndexedPriorityQueue
- rightMultiply()
: CLinkMatrix
- rightPrecedence()
: CNodeK
- rkf45_()
: CHybridMethodODE45
- rkfs_()
: CHybridMethodODE45
- rls
: dls001
- rlsa
: dlsa01
- rlsr
: dlsr01
- rmax
: dls001
- RNORMAL
: CEvaluationNodeFunction
- rnormal()
: CEvaluationNodeFunction
- Role
: CFunctionParameter
, CLMetabReferenceGlyph
- ROLE_ACTIVATOR
: CQNewMainWindow
- ROLE_INHIBITOR
: CQNewMainWindow
- ROLE_MODIFIER
: CQNewMainWindow
- ROLE_PRODUCT
: CQNewMainWindow
- ROLE_SIDEPRODUCT
: CQNewMainWindow
- ROLE_SIDESUBSTRATE
: CQNewMainWindow
- ROLE_SUBSTRATE
: CQNewMainWindow
- ROLE_UNSPECIFIED
: CQNewMainWindow
- RoleName
: CLMetabReferenceGlyph
- RoleNameDisplay
: CFunctionParameter
- RoleNameXML
: CFunctionParameter
- roll
: CQIconResource
- Root
: CCopasiObject
- ROOT
: CTrajectoryMethod
- root
: ObjectList
, soap
- RootMasking
: CLsodaMethod
- rootsFound()
: CProcessQueue
- rotate()
: CCellDesignerImporter
- round()
: SBMLImporter
, SEDMLImporter
- round2powN()
: CQGLNetworkPainter
- row()
: CSparseMatrixElement
- rowAxeLength
: CQBarChart::Data
- rowCount()
: CQBiologicalDescriptionDM
, CQBrowserPaneDM
, CQCompartmentDM
, CQCreatorDM
, CQEFMNetReactionDM
, CQEFMReactionDM
, CQEFMSpeciesDM
, CQEventDM
, CQFluxModeDM
, CQFunctionDM
, CQGlobalQuantityDM
, CQLayoutsDM
, CQModifiedDM
, CQParameterOverviewDM
, CQParameterSetsDM
, CQPlotDM
, CQReactionDM
, CQReferenceDM
, CQReportDM
, CQSpecieDM
, CQTimeSeriesDM
- rownd2
: dlsa01
- rownr3
: dlsr01
- rowns
: dls001
- rowns2
: dlsa01
- rows
: CQBarChart::Data
- RowScale()
: RowScale
- RPOISSON
: CEvaluationNodeFunction
- rpoisson()
: CEvaluationNodeFunction
- run()
: COscillationMethod
, COscillationMethodIntegrate
, CQLayoutThread
, CQTaskThread
, CQThread
, stress_test
- runAnimation()
: CQGLNetworkPainter
- runBtnClicked()
: TaskWidget
- runCrossSectionTask()
: SliderDialog
- rungeKutta()
: CHybridMethod
- runiform()
: CEvaluationNodeFunction
- RUNIFORM
: CEvaluationNodeFunction
- runLNATask()
: SliderDialog
- runMCATask()
: SliderDialog
- runOptimizationTask()
: SliderDialog
- runParameterEstimationTask()
: SliderDialog
- runScanTask()
: SliderDialog
- runSteadyStateTask()
: SliderDialog
- runTask()
: CQCrossSectionTaskWidget
, CQEFMWidget
, CQFittingWidget
, CQLNAWidget
, CQLyapWidget
, CQMCAWidget
, CQMoietiesTaskWidget
, CQOptimizationWidget
, CQOscillationTaskWidget
, CQTrajectoryWidget
, CQTSSAWidget
, ScanWidget
, SensitivitiesWidget
, SliderDialog
, SteadyStateWidget
, TaskWidget
- runTimeCourse()
: SliderDialog