Here is a list of all class members with links to the classes they belong to:

- r -

• CCopasiReportSeparator() : CCopasiReportSeparator
• CCopasiRootContainer() : CCopasiRootContainer
• Cr250() : Cr250
• CRandom() : CRandom
• CRandom::createGenerator : Cmt19937 , Cmt19937HR , Cr250
• CRandomSearch() : CRandomSearch
• CRandomSearchMaster() : CRandomSearchMaster
• CRaptorInit() : CRaptorInit
• CRDFGraph() : CRDFGraph
• CRDFLiteral() : CRDFLiteral
• CRDFNode() : CRDFNode
• CRDFNode::addTripletToGraph : CRDFGraph
• CRDFNode::removeTripletFromGraph : CRDFGraph
• CRDFObject() : CRDFObject
• CRDFParser() : CRDFParser
• CRDFPredicate() : CRDFPredicate
• CRDFSubject() : CRDFSubject
• CRDFTriplet() : CRDFTriplet
• CRDFUtilities() : CRDFUtilities
• CRDFWriter() : CRDFWriter
• CReaction() : CReaction
• CReactionDependencies() : CStochDirectMethod::CReactionDependencies , CTauLeapMethod::CReactionDependencies , CTrajAdaptiveSA::CReactionDependencies , CTrajectoryMethodDsaLsodar::CReactionDependencies
• CReactionInterface() : CReactionInterface
• CReadConfig() : CReadConfig
• CRealProblem() : CRealProblem
• CRecentFiles() : CRecentFiles
• CReference() : CReference
• CRegisteredObjectName() : CRegisteredObjectName
• CReport() : CReport
• CReportBody() : CReportBody
• CReportDefinition() : CReportDefinition
• CReportDefinitionVector() : CReportDefinitionVector
• CReportTable() : CReportTable
• CResult() : CCopasiTask::CResult
• CRoot() : CMathEventN::CTrigger::CRoot
• CRootFinder() : CMathTrigger::CRootFinder
• CrossPoint : COptMethodEP2 , COptMethodHGASA
• CrossSection : CSensProblem
• r : complex , doublecomplex , Multitype
• r250() : Cr250 , CRandom
• r250n() : Cr250
• RadialGradient : CCopasiXMLParser::RadialGradientElement
• RadialGradientElement() : CCopasiXMLParser::RadialGradientElement
• radius_ : Bar
• randfile : soap
• RANDOM : CQStartValueReset
• randomize() : CCopasiSpringLayout , COptMethodSS
• randomizeLayout() : CQLayoutThread , CQNewMainWindow
• randomizeStartValues() : COptProblem
• RandomSearch : CCopasiMethod
• RandomSearchMaster : CCopasiMethod
• range : CProcessQueue
• Rate : CMath
• ratio : dlsa01
• RATIONALE : CEvaluationNodeNumber
• RAW : CCopasiMessage
• RAW_FILTERED : CCopasiMessage
• rc : dls001
• RDF : CCopasiXMLParser::MiriamAnnotationElement
• rdf__n : CRDFPredicate
• rdf_li : CRDFPredicate
• rdf_object : CRDFPredicate
• rdf_predicate : CRDFPredicate
• rdf_subject : CRDFPredicate
• rdf_type : CRDFPredicate
• rdum3 : dlsr01
• reachedStdDeviation() : COptMethodPS
• ReactantLink() : ReactantLink
• Reaction : CCopasiXMLParser::ListOfReactionsElement , CCopasiXMLParser::ReactionElement , CMath , CModelParameter
• REACTION : ListViews
• REACTION_2V : CCopasiSpringLayout::UpdateAction
• REACTION_CONC_FLUXES : CObjectLists
• REACTION_GLYPH : CQNewMainWindow
• REACTION_METAB_CONCENTRATIONS : CObjectLists
• REACTION_METAB_NUMBERS : CObjectLists
• REACTION_PART_FLUXES : CObjectLists
• REACTION_SELECTION_BITS : CQNewMainWindow
• ReactionAnnotation() : ReactionAnnotation
• ReactionElement() : CCopasiXMLParser::ReactionElement
• ReactionGlyph : CCopasiXMLParser::ListOfReactionGlyphsElement , CCopasiXMLParser::ReactionGlyphElement
• ReactionGlyphElement() : CCopasiXMLParser::ReactionGlyphElement
• reactionInvolvesCompartment() : CModelAdd
• ReactionModification() : ReactionModification
• reactionModifier : CQIconResource
• ReactionParameter : CModelParameter
• reactionProduct : CQIconResource
• ReactionResult() : CModelAnalyzer::ReactionResult
• REACTIONS : CModelEntity , CObjectLists
• reactionSubstrate : CQIconResource
• reactionsWidget1 : ListViews
• ReactionsWidget1() : ReactionsWidget1
• reactionTypeToEnum() : CCellDesignerImporter
• read() : CExperiment
• readColumnNames() : CExperiment
• readIntoSet() : CLStyle
• readLine() : CTableRow
• readListOfLayouts() : SBMLDocumentLoader
• readListOfPlotsFromSedMLOutput() : SEDMLImporter
• ReadOnly : CRDFPredicate::sAllowedLocation
• readSBML() : SBMLImporter
• readSEDML() : SEDMLImporter
• reallocated() : C2DCurveData , CBandedGraphData , CHistoCurveData
• reallocatedData() : C2DPlotCurve
• RecordingActivityName : CPlotItem
• recordReset() : CInterpolation
• recordState() : CInterpolation
• recreate() : CQLayoutScene
• recreateNeeded() : CQLayoutScene
• Rectangle : CCopasiXMLParser::RectangleElement
• RECTANGLE : CQGLNetworkPainter
• RectangleElement() : CCopasiXMLParser::RectangleElement
• recursion() : CSBMLunitInterface
• RECURSION_LIMIT : CNormalTranslation
• recursion_limit_exception() : recursion_limit_exception
• recursionDivide() : CSBMLunitInterface
• recursionEqual() : CSBMLunitInterface
• recursionPiecewise() : CSBMLunitInterface
• recursionPower() : CSBMLunitInterface
• recursionTimes() : CSBMLunitInterface
• Recursive : CMathDependencyNodeIterator
• recv_timeout : soap
• recvfd : soap
• reDimensionalize() : CArrayAnnotation
• redrawNow() : CQNewMainWindow
• reduce() : CTableauLine
• REDUCED_JACOBIAN_EV_IM : CObjectLists
• REDUCED_JACOBIAN_EV_RE : CObjectLists
• Reference : CCopasiObject
• referenceList : CBrowserObject
• referenceType : CCopasiMatrixReference< CType > , CCopasiObject , CCopasiObjectReference< CType > , CCopasiVectorReference< CType >
• REFLECT : CLGradientBase
• refresh() : CCopasiTimer , CExpression , COutputHandler
• Refresh() : Refresh
• refreshActiveParameterSet() : CModel
• refreshAmount() : CMoiety
• refreshCompartments() : CQSpeciesWidget
• refreshConcentration() : CMetab
• refreshConcentrationRate() : CMetab
• refreshDependentNumber() : CMoiety
• refreshFromModel() : CModelParameter , CModelParameterGroup
• refreshInitialConcentration() : CMetab
• refreshInitialValue() : CMetab , CModelEntity , CMoiety
• refreshInitialValues() : DataModelGUI
• refreshList : ObjectBrowserWidget
• refreshNumber() : CMetab
• refreshRate() : CMetab
• refreshRecentFileMenu() : CopasiUI3Window
• refreshRecentSBMLFileMenu() : CopasiUI3Window
• RefreshTemplate() : RefreshTemplate< CClass >
• refreshText() : CQReportListItem
• refreshTransitionTime() : CMetab
• refreshValue() : CMoiety
• refreshWindowsMenu() : CopasiUI3Window
• registerListView() : DataModelGUI
• registerMethods() : Copasi2SBMLTranslator
• regularTimer : CQGLNetworkPainter
• reject() : CQProgressDialog , CQReportDefinitionSelect
• relativeDifferenceOfStates() : CCrossSectionTask
• rememberStartValue() : COptItem
• rememberStartValues() : COptProblem
• remove() : CCopasiContainer , CCopasiVector< T > , CCopasiVectorN< CType > , CDirEntry , CFunctionParameters , CKeyFactory::HashTable , CKeyFactory , CModelParameterGroup , CNormalLcm , CNormalProduct , CQBrowserPaneDM , CSparseMatrix , CStateTemplate
• removeBiologicalDescription() : CMIRIAMInfo
• removeCallParameter() : CFunctionParameterMap
• removeCharactersFromString() : SEDMLUtils
• removeChild() : CCopasiNode< _Data > , CEvaluationNodeCall , ConverterASTNode
• removeColorDefinition() : CLRenderInformationBase
• removeColumn() : CStepMatrix
• removeCompartment() : CModel
• removeCOPASIkey() : SBMLReference
• removeCreator() : CMIRIAMInfo
• removeCrossValidation() : CFitItem
• removeCurve() : CQPlotSubwidget
• removeCurveElement() : CLRenderCurve
• removeDatamodel() : CCopasiRootContainer
• removeDependentModelObjects() : CModel
• removeDeterministicReaction() : CHybridMethod , CHybridMethodLSODA
• removeDirectDependency() : CCopasiObject
• removeDuplicate() : ObjectBrowserWidget
• removeEdge() : CRDFNode
• removeElement() : CLPolygon
• removeEmptyNodes() : CRDFGraph
• removeEmptySubTree() : CQSimpleSelectionTree
• removeEvent() : CCrossSectionTask , CModel
• removeExperiment() : CExperimentSet , CFitItem
• removeFiles() : CDirEntry
• removeFromHistory() : CQTaskMethodWidget
• removeFromMainWindow() : CWindowInterface
• removeFromScene() : CQCopasiAnimation , CQEffectDescription
• removeFromSelection() : CLLayoutRenderer
• removeFunction() : CFunctionDB
• removeGradientDefinition() : CLRenderInformationBase
• removeInitialAssignment() : CSBMLExporter
• removeInterface() : COutputHandler , COutputHandlerPlot
• removeInvalidColumns() : CStepMatrix
• removeItemInAnimation() : CQLayoutMainWindow
• removeKey() : CLLocalStyle
• removeLayout() : CCopasiDataModel
• removeLine() : CTableauMatrix
• removeLineEnding() : CLRenderInformationBase
• removeLocalReactionParameter() : CModel
• removeMapping() : CReactionInterface
• removeMetabolite() : CModel
• removeMetaboliteForAnimation() : CQGLNetworkPainter
• removeModelValue() : CModel
• removeModification() : CMIRIAMInfo
• removeNode() : CCopasiTree< _Node >
• removeOptItem() : COptProblem
• removeParameter() : CCopasiParameterGroup
• removePlotSpec() : COutputDefinitionVector
• removeProgressItem() : CQProgressDialog
• removeReaction() : CModel
• removeReference() : CMIRIAMInfo
• removeReportDefinition() : CReportDefinitionVector
• removeRole() : CLStyle
• removeRow() : CQBaseDataModel
• removeRows() : CQBaseDataModel , CQBiologicalDescriptionDM , CQBrowserPaneDM , CQCompartmentDM , CQCreatorDM , CQEFMNetReactionDM , CQEFMReactionDM , CQEFMSpeciesDM , CQEventDM , CQFluxModeDM , CQFunctionDM , CQGlobalQuantityDM , CQLayoutsDM , CQModifiedDM , CQParameterSetsDM , CQPlotDM , CQReactionDM , CQReferenceDM , CQReportDM , CQSpecieDM , CQTimeSeriesDM
• removeRule() : CSBMLExporter
• removeSBMLid() : SBMLReference
• removeSBMLIdFromFunctions() : CCopasiDataModel
• removeScanItem() : CScanProblem
• removeSibling() : CCopasiNode< _Data >
• removeSlider() : SliderDialog
• removeSpecies() : CModelParameterCompartment
• removeStochReaction() : CIndexedPriorityQueue
• removeTriplet() : CRDFGraph
• removeTripletFromGraph() : CRDFNode
• removeType() : CLStyle
• removeUnsupportedAnnotation() : CAnnotation
• removeUnusedFunctions() : SBMLImporter
• removeUnusedObjects() : CSBMLExporter
• removeVariables() : CSensProblem
• removeWindow() : CopasiUI3Window
• rename() : CQBrowserPaneDM
• RENAME : ListViews
• renameMassActionParameters() : SBMLImporter
• RenderCurve : CCopasiXMLParser::RenderCurveElement
• RenderCurveElement() : CCopasiXMLParser::RenderCurveElement
• renderMarkup : CQIconResource
• renderMathML : CQIconResource
• RenderText : CCopasiXMLParser::TextElement
• reorder() : CStateTemplate
• reorderNodes() : CEvaluationNodeNormalizer
• rePartition() : CTrajectoryMethodDsaLsodar::CPartition
• REPEAT : CLGradientBase
• replace_delay_nodes() : SBMLImporter
• replace_local_parameters() : CSBMLExporter
• replace_name_nodes() : SBMLImporter
• replace_time_with_initial_time() : SBMLImporter
• replaceAmountReferences() : SBMLImporter
• replaceCallNodeNames() : SBMLImporter
• replaceChild() : CSBMLExporter
• replaceDiscontinuousNode() : CMathContainer
• replaceInCompartment() : CModelExpansion
• replaceInEvent() : CModelExpansion
• replaceInExpression() : CModelExpansion
• replaceInMetab() : CModelExpansion
• replaceInModel() : CModelExpansion
• replaceInModelEntity() : CModelExpansion
• replaceInReaction() : CModelExpansion
• replaceL1IncompatibleNodes() : CSBMLExporter
• replaceLog() : SBMLImporter
• replaceLogicOperators() : CMathMLToTeX
• replaceMathOperators() : CMathMLToTeX
• replaceObjectNames() : SBMLImporter
• replaceOtherOperators() : CMathMLToTeX
• replacePowerFunctionNodes() : SBMLImporter
• replaceRoot() : SBMLImporter
• replaceSpeciesReferences() : CSBMLExporter
• replaceTimeAndAvogadroNodeNames() : SBMLImporter
• replaceTimeDependentFunctionCalls() : SBMLImporter
• replaceTimeNodesInFunctionDefinition() : SBMLImporter
• replaceTrigoOperators() : CMathMLToTeX
• replaceUnsupportedAnnotation() : CAnnotation
• replicate() : CGA , COptMethodDE , COptMethodEP , COptMethodGA , COptMethodGASR , COptMethodHGASA , COptMethodSRES
• replot() : CopasiPlot
• replotSignal() : CopasiPlot
• REPORT : CCopasiTask
• Report : CCopasiXMLParser::BodyElement , CCopasiXMLParser::FooterElement , CCopasiXMLParser::HeaderElement , CCopasiXMLParser::ListOfReportsElement , CCopasiXMLParser::ReportElement , CCopasiXMLParser::ReportInstanceElement , CCopasiXMLParser::TaskElement
• REPORT : ListViews
• reportBtnClicked() : TaskWidget
• ReportElement() : CCopasiXMLParser::ReportElement
• ReportInstanceElement() : CCopasiXMLParser::ReportInstanceElement
• reportReferenceMap : SCopasiXMLParserCommon
• rescale() : ScrollZoomer
• rescaleDataSets() : CQGLNetworkPainter
• rescaleDataSetsWithNewMinMax() : CQGLNetworkPainter
• rescaleNode() : CQGLNetworkPainter
• reset() : BarColor , CCopasiXMLParser::ParameterDescriptionElement , COptProblem , CProcessReport , CQProgressItem , CQProgressItemBar , CQProgressItemText , CScanItem , CXMLElementHandler< CType, CCommon > , SliderDialog
• resetConstraintViolation() : CFitConstraint
• resetEvaluations() : COptProblem
• resetItem() : CProcessReport , CProgressBar
• resetKeySpace() : ObjectBrowserItem
• resetPlot() : CQPlotSubwidget
• resetRange() : CSlider
• resetState() : CInternalSolver
• resetValue() : CopasiSlider , CSlider , SliderDialog
• resetView() : CQGLLayoutPainter , CQGLLayoutViewer , CQGLNetworkPainter , CQGLViewport , CQNewMainWindow
• resize() : CArrayAnnotation , CCallParameters< Type > , CCopasiArray , CCopasiVector< T > , CDependencyGraph , CLLayoutRenderer , CMatrix< CType > , CSparseMatrix , CState , CStateTemplate , CTableRow , CVector< CType >
• resizeAllMatrices() : CLNAMethod , CMCAMethod
• resizeCoordSys() : CQBarChart
• resizeCurveData() : CopasiPlot
• resizeEvent() : CQGLLayoutViewer , CQGLViewport , CScanContainerWidget
• resizeGL() : CQGLLayoutPainter , CQGLNetworkPainter
• resizeOneDimension() : CArrayAnnotation
• resolve_color() : CLLayoutRenderer
• resolve_text() : CLLayoutRenderer
• resolveDatagenerator() : SEDMLUtils
• resolveFunctionName() : CSBMLunitInterface
• resolveSimultaneousAssignments : CProcessQueue
• resolveStyle() : CLRenderResolver
• resolveStyleForKey() : CLRenderResolver
• resolveStyleForRole() : CLRenderResolver
• resolveStyleForType() : CLRenderResolver
• resolveVariableName() : CSBMLunitInterface
• resolveXPath() : SEDMLUtils
• RESOURCE : CRDFObject , CRDFSubject
• restore() : CCopasiProblem , CCopasiTask , CCrossSectionTask , CFitProblem , CLNATask , CLyapTask , CMCATask , CMoietiesTask , COptProblem , CScanTask , CSensMethod , CSensTask , CSteadyStateTask , CTrajectoryTask , CTSSATask
• restore_current_attributes() : CLLayoutRenderer
• restore_local_parameters() : CSBMLExporter
• restoreDeducedRoles() : CQGLLayoutViewer
• restoreFunctionDB() : SBMLImporter , SEDMLImporter
• restoreModel() : COptProblem
• restoreModelIndependentData() : CExperiment
• restoreValue() : CScanItem
• Result() : CFunctionAnalyzer::Result , CQCompartmentCopyOptions , CQStartValueReset
• result : CSBMLunitInterface::EvaluationResult
• resultAvailable() : CLyapTask
• resultHasDivergence() : CLyapTask
• Results : CQSimpleSelectionTree
• resume() : CQLayoutThread
• ReturnCode : CSteadyStateMethod
• returnCurrentTime() : CTSSAMethod
• returnProcess() : CSteadyStateMethod
• revalidate() : CQValidator< Type >
• reverse() : CChemEqInterface , CReactionInterface
• reverseChecked() : ObjectBrowserItem
• revert_curve() : CLLayoutRenderer
• revertBtnClicked() : TaskWidget
• revertCurve() : CQGLLayoutPainter
• revertDeducedRoles() : CQGLLayoutViewer
• rewind() : CReadConfig
• RG_createTextureForText() : CQGLNetworkPainter
• RG_drawStringAt() : CQGLNetworkPainter
• RGAMMA : CEvaluationNodeFunction
• rgamma() : CEvaluationNodeFunction
• right : CEvaluationNode::CPrecedence
• rightChild() : CIndexedPriorityQueue
• rightMultiply() : CLinkMatrix
• rightPrecedence() : CNodeK
• rkf45_() : CHybridMethodODE45
• rkfs_() : CHybridMethodODE45
• rls : dls001
• rlsa : dlsa01
• rlsr : dlsr01
• rmax : dls001
• RNORMAL : CEvaluationNodeFunction
• rnormal() : CEvaluationNodeFunction
• Role : CFunctionParameter , CLMetabReferenceGlyph
• ROLE_ACTIVATOR : CQNewMainWindow
• ROLE_INHIBITOR : CQNewMainWindow
• ROLE_MODIFIER : CQNewMainWindow
• ROLE_PRODUCT : CQNewMainWindow
• ROLE_SIDEPRODUCT : CQNewMainWindow
• ROLE_SIDESUBSTRATE : CQNewMainWindow
• ROLE_SUBSTRATE : CQNewMainWindow
• ROLE_UNSPECIFIED : CQNewMainWindow
• RoleName : CLMetabReferenceGlyph
• RoleNameDisplay : CFunctionParameter
• RoleNameXML : CFunctionParameter
• roll : CQIconResource
• Root : CCopasiObject
• ROOT : CTrajectoryMethod
• root : ObjectList , soap
• RootMasking : CLsodaMethod
• rootsFound() : CProcessQueue
• rotate() : CCellDesignerImporter
• round() : SBMLImporter , SEDMLImporter
• round2powN() : CQGLNetworkPainter
• row() : CSparseMatrixElement
• rowAxeLength : CQBarChart::Data
• rowCount() : CQBiologicalDescriptionDM , CQBrowserPaneDM , CQCompartmentDM , CQCreatorDM , CQEFMNetReactionDM , CQEFMReactionDM , CQEFMSpeciesDM , CQEventDM , CQFluxModeDM , CQFunctionDM , CQGlobalQuantityDM , CQLayoutsDM , CQModifiedDM , CQParameterOverviewDM , CQParameterSetsDM , CQPlotDM , CQReactionDM , CQReferenceDM , CQReportDM , CQSpecieDM , CQTimeSeriesDM
• rownd2 : dlsa01
• rownr3 : dlsr01
• rowns : dls001
• rowns2 : dlsa01
• rows : CQBarChart::Data
• RowScale() : RowScale
• RPOISSON : CEvaluationNodeFunction
• rpoisson() : CEvaluationNodeFunction
• run() : COscillationMethod , COscillationMethodIntegrate , CQLayoutThread , CQTaskThread , CQThread , stress_test
• runAnimation() : CQGLNetworkPainter
• runBtnClicked() : TaskWidget
• runCrossSectionTask() : SliderDialog
• rungeKutta() : CHybridMethod
• runiform() : CEvaluationNodeFunction
• RUNIFORM : CEvaluationNodeFunction
• runLNATask() : SliderDialog
• runMCATask() : SliderDialog
• runOptimizationTask() : SliderDialog
• runParameterEstimationTask() : SliderDialog
• runScanTask() : SliderDialog
• runSteadyStateTask() : SliderDialog
• runTask() : CQCrossSectionTaskWidget , CQEFMWidget , CQFittingWidget , CQLNAWidget , CQLyapWidget , CQMCAWidget , CQMoietiesTaskWidget , CQOptimizationWidget , CQOscillationTaskWidget , CQTrajectoryWidget , CQTSSAWidget , ScanWidget , SensitivitiesWidget , SliderDialog , SteadyStateWidget , TaskWidget
• runTimeCourse() : SliderDialog