COPASI API  4.16.103
Public Types | Public Member Functions | Static Public Member Functions | Private Member Functions | Private Attributes | List of all members
CScanProblem Class Reference

#include <CScanProblem.h>

Inheritance diagram for CScanProblem:
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Collaboration diagram for CScanProblem:
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Public Types

enum  Type { SCAN_REPEAT = 0, SCAN_LINEAR, SCAN_RANDOM, SCAN_BREAK }
 
- Public Types inherited from CCopasiParameterGroup
typedef parameterGroup::iterator index_iterator
 
typedef
CCopasiContainer::objectMap::iterator 
name_iterator
 
typedef std::vector
< CCopasiParameter * > 
parameterGroup
 
- Public Types inherited from CCopasiParameter
enum  Type {
  DOUBLE = 0, UDOUBLE, INT, UINT,
  BOOL, GROUP, STRING, CN,
  KEY, FILE, EXPRESSION, INVALID
}
 
- Public Types inherited from CCopasiContainer
typedef std::multimap
< std::string, CCopasiObject * > 
objectMap
 
- Public Types inherited from CCopasiObject
typedef std::set< const
CCopasiObject * > 
DataObjectSet
 
typedef std::vector< Refresh * > DataUpdateSequence
 
- Public Types inherited from CObjectInterface
typedef std::set< const
CObjectInterface * > 
ObjectSet
 
typedef std::vector
< CObjectInterface * > 
UpdateSequence
 

Public Member Functions

CCopasiParameterGroupaddScanItem (CScanProblem::Type type, size_t steps=5, const CCopasiObject *obj=NULL)
 
void clearScanItems ()
 
 CScanProblem (const CCopasiContainer *pParent=NULL)
 
 CScanProblem (const CScanProblem &src, const CCopasiContainer *pParent=NULL)
 
void fixBuild81 ()
 
bool getContinueFromCurrentState () const
 
size_t getNumberOfScanItems () const
 
const bool & getOutputInSubtask () const
 
const CCopasiParameterGroupgetScanItem (size_t index) const
 
CCopasiParameterGroupgetScanItem (size_t index)
 
CCopasiTask::Type getSubtask () const
 
void load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::NEXT)
 
bool removeScanItem (const size_t &index)
 
void setContinueFromCurrentState (bool aic)
 
void setOutputInSubtask (bool ois)
 
void setSubtask (CCopasiTask::Type type)
 
 ~CScanProblem ()
 
- Public Member Functions inherited from CCopasiProblem
 CCopasiProblem (const CCopasiProblem &src, const CCopasiContainer *pParent=NULL)
 
CModelgetModel () const
 
const CCopasiTask::TypegetType () const
 
virtual bool initialize ()
 
virtual void print (std::ostream *ostream) const
 
virtual void printResult (std::ostream *ostream) const
 
virtual bool restore (const bool &updateModel)
 
virtual bool setCallBack (CProcessReport *pCallBack)
 
virtual bool setModel (CModel *pModel)
 
virtual ~CCopasiProblem ()
 
- Public Member Functions inherited from CCopasiParameterGroup
bool addGroup (const std::string &name)
 
bool addParameter (const CCopasiParameter &parameter)
 
bool addParameter (const std::string &name, const CCopasiParameter::Type type)
 
template<class CType >
bool addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value)
 
void addParameter (CCopasiParameter *pParameter)
 
CCopasiParameterGroupassertGroup (const std::string &name)
 
template<class CType >
CCopasiParameterassertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)
 
index_iterator beginIndex () const
 
name_iterator beginName () const
 
 CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)
 
 CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")
 
void clear ()
 
virtual bool elevateChildren ()
 
index_iterator endIndex () const
 
name_iterator endName () const
 
CCopasiParameterGroupgetGroup (const std::string &name)
 
const CCopasiParameterGroupgetGroup (const std::string &name) const
 
CCopasiParameterGroupgetGroup (const size_t &index)
 
const CCopasiParameterGroupgetGroup (const size_t &index) const
 
size_t getIndex (const std::string &name) const
 
std::string getKey (const std::string &name) const
 
std::string getKey (const size_t &index) const
 
virtual const std::string & getName (const size_t &index) const
 
virtual const CObjectInterfacegetObject (const CCopasiObjectName &cn) const
 
CCopasiParametergetParameter (const std::string &name)
 
const CCopasiParametergetParameter (const std::string &name) const
 
CCopasiParametergetParameter (const size_t &index)
 
const CCopasiParametergetParameter (const size_t &index) const
 
CCopasiParameter::Type getType (const std::string &name) const
 
CCopasiParameter::Type getType (const size_t &index) const
 
std::string getUniqueParameterName (const CCopasiParameter *pParameter) const
 
const CCopasiParameter::ValuegetValue (const std::string &name) const
 
const CCopasiParameter::ValuegetValue (const size_t &index) const
 
CCopasiParameter::ValuegetValue (const std::string &name)
 
CCopasiParameter::ValuegetValue (const size_t &index)
 
CCopasiParameterGroupoperator= (const CCopasiParameterGroup &rhs)
 
bool removeParameter (const std::string &name)
 
bool removeParameter (const size_t &index)
 
template<class CType >
bool setValue (const std::string &name, const CType &value)
 
template<class CType >
bool setValue (const size_t &index, const CType &value)
 
size_t size () const
 
bool swap (const size_t &iFrom, const size_t &iTo)
 
bool swap (index_iterator &from, index_iterator &to)
 
virtual ~CCopasiParameterGroup ()
 
- Public Member Functions inherited from CCopasiParameter
 CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)
 
 CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")
 
virtual CCopasiObjectName getCN () const
 
virtual const std::string & getKey () const
 
virtual std::string getObjectDisplayName (bool regular=true, bool richtext=false) const
 
const CCopasiParameter::TypegetType () const
 
const ValuegetValue () const
 
ValuegetValue ()
 
virtual voidgetValuePointer () const
 
CCopasiObjectgetValueReference () const
 
bool isValidValue (const C_FLOAT64 &value) const
 
bool isValidValue (const C_INT32 &value) const
 
bool isValidValue (const unsigned C_INT32 &value) const
 
bool isValidValue (const bool &value) const
 
bool isValidValue (const std::string &value) const
 
bool isValidValue (const CCopasiObjectName &value) const
 
bool isValidValue (const std::vector< CCopasiParameter * > &value) const
 
CCopasiParameteroperator= (const CCopasiParameter &rhs)
 
template<class CType >
bool setValue (const CType &value)
 
bool setValue (const std::vector< CCopasiParameter * > &value)
 
virtual ~CCopasiParameter ()
 
- Public Member Functions inherited from CCopasiContainer
virtual bool add (CCopasiObject *pObject, const bool &adopt=true)
 
 CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)
 
 CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)
 
virtual std::string getChildObjectUnits (const CCopasiObject *pObject) const
 
virtual const objectMapgetObjects () const
 
virtual std::string getUnits () const
 
virtual const CCopasiObjectgetValueObject () const
 
virtual bool remove (CCopasiObject *pObject)
 
virtual ~CCopasiContainer ()
 
- Public Member Functions inherited from CCopasiObject
void addDirectDependency (const CCopasiObject *pObject)
 
 CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL)
 
void clearDirectDependencies ()
 
void clearRefresh ()
 
bool dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const
 
void getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const
 
virtual const DataObjectSetgetDirectDependencies (const DataObjectSet &context=DataObjectSet()) const
 
CCopasiContainergetObjectAncestor (const std::string &type) const
 
CCopasiDataModelgetObjectDataModel ()
 
const CCopasiDataModelgetObjectDataModel () const
 
const std::string & getObjectName () const
 
CCopasiContainergetObjectParent () const
 
const std::string & getObjectType () const
 
virtual const
CObjectInterface::ObjectSet
getPrerequisites () const
 
virtual RefreshgetRefresh () const
 
UpdateMethodgetUpdateMethod () const
 
bool hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const
 
bool hasUpdateMethod () const
 
bool isArray () const
 
bool isContainer () const
 
bool isDataModel () const
 
bool isMatrix () const
 
bool isNameVector () const
 
bool isNonUniqueName () const
 
virtual bool isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const
 
bool isReference () const
 
bool isRoot () const
 
bool isSeparator () const
 
bool isStaticString () const
 
bool isValueBool () const
 
bool isValueDbl () const
 
bool isValueInt () const
 
bool isValueInt64 () const
 
bool isValueString () const
 
bool isVector () const
 
virtual bool mustBeDeleted (const DataObjectSet &deletedObjects) const
 
void removeDirectDependency (const CCopasiObject *pObject)
 
void setDirectDependencies (const DataObjectSet &directDependencies)
 
bool setObjectName (const std::string &name)
 
virtual bool setObjectParent (const CCopasiContainer *pParent)
 
void setObjectValue (const C_FLOAT64 &value)
 
void setObjectValue (const C_INT32 &value)
 
void setObjectValue (const bool &value)
 
template<class CType >
void setRefresh (CType *pType, void(CType::*method)(void))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &))
 
template<class CType >
void setUpdateMethod (CType *pType, void(CType::*method)(const bool &))
 
virtual ~CCopasiObject ()
 
- Public Member Functions inherited from CObjectInterface
 CObjectInterface ()
 
virtual ~CObjectInterface ()
 

Static Public Member Functions

static CCopasiParameterGroupcreateScanItem (CScanProblem::Type type, size_t steps=5, const CCopasiObject *obj=NULL)
 
- Static Public Member Functions inherited from CCopasiObject
static std::vector< Refresh * > buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())
 
static void setRenameHandler (CRenameHandler *rh)
 

Private Member Functions

void initializeParameter ()
 

Private Attributes

CCopasiParameterGroupmpScanItems
 

Additional Inherited Members

- Static Public Attributes inherited from CCopasiParameter
static const std::string TypeName []
 
static const char * XMLType []
 
- Static Public Attributes inherited from CCopasiContainer
static const std::vector
< CCopasiContainer * > 
EmptyList
 
- Protected Types inherited from CCopasiObject
enum  Flag {
  Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8,
  Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80,
  ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800,
  Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000,
  Root = 0x10000, Gui = 0x20000
}
 
- Protected Member Functions inherited from CCopasiProblem
 CCopasiProblem (const CCopasiTask::Type &type, const CCopasiContainer *pParent=NULL)
 
- Protected Member Functions inherited from CCopasiParameterGroup
 CCopasiParameterGroup ()
 
- Protected Member Functions inherited from CCopasiContainer
template<class CType >
CCopasiObjectaddMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObjectaddObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
template<class CType >
CCopasiObjectaddVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)
 
void initObjects ()
 
- Protected Member Functions inherited from CCopasiObject
 CCopasiObject ()
 
 CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)
 
- Protected Attributes inherited from CCopasiProblem
CProcessReportmpCallBack
 
CModelmpModel
 
CReportmpReport
 
- Protected Attributes inherited from CCopasiParameter
std::string mKey
 
CCopasiObjectmpValueReference
 
size_t mSize
 
Value mValue
 
- Protected Attributes inherited from CCopasiContainer
objectMap mObjects
 
- Static Protected Attributes inherited from CCopasiObject
static CRenameHandlersmpRenameHandler = NULL
 

Detailed Description

CScanProblem class.

Definition at line 30 of file CScanProblem.h.

Member Enumeration Documentation

Enumerator
SCAN_REPEAT 
SCAN_LINEAR 
SCAN_RANDOM 
SCAN_BREAK 

Definition at line 33 of file CScanProblem.h.

Constructor & Destructor Documentation

CScanProblem::CScanProblem ( const CCopasiContainer pParent = NULL)

Default constructor.

Parameters
constCCopasiContainer * pParent (default: NULL)

CScanProblem class. Default constructor.

Parameters
CModel *pModel

Definition at line 31 of file CScanProblem.cpp.

References initializeParameter().

31  :
33  mpScanItems(NULL)
34 {
36 }
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
void initializeParameter()
CScanProblem::CScanProblem ( const CScanProblem src,
const CCopasiContainer pParent = NULL 
)

Copy constructor.

Parameters
constCTrajectoryProblem & src CCopasiContainer * pParent (default: NULL)

Copy constructor.

Parameters
const CScanProblem &src

Definition at line 42 of file CScanProblem.cpp.

References initializeParameter().

43  :
44  CCopasiProblem(src, pParent),
45  mpScanItems(NULL)
46 {
48 }
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
void initializeParameter()
CScanProblem::~CScanProblem ( )

Destructor.

Definition at line 53 of file CScanProblem.cpp.

54 {}

Member Function Documentation

CCopasiParameterGroup * CScanProblem::addScanItem ( CScanProblem::Type  type,
size_t  steps = 5,
const CCopasiObject obj = NULL 
)

Definition at line 135 of file CScanProblem.cpp.

References CCopasiParameterGroup::addParameter(), createScanItem(), and mpScanItems.

Referenced by SEDMLImporter::importTasks(), and ScanWidget::saveTask().

136 {
137  CCopasiParameterGroup * pItem = createScanItem(type, steps, obj);
138  mpScanItems->addParameter(pItem);
139 
140  return pItem;
141 }
static CCopasiParameterGroup * createScanItem(CScanProblem::Type type, size_t steps=5, const CCopasiObject *obj=NULL)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
bool addParameter(const CCopasiParameter &parameter)
void CScanProblem::clearScanItems ( )

Definition at line 184 of file CScanProblem.cpp.

References CCopasiParameterGroup::clear(), and mpScanItems.

185 {
186  mpScanItems->clear();
187 }
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
CCopasiParameterGroup * CScanProblem::createScanItem ( CScanProblem::Type  type,
size_t  steps = 5,
const CCopasiObject obj = NULL 
)
static

Definition at line 149 of file CScanProblem.cpp.

References CCopasiParameterGroup::addParameter(), CCopasiParameter::BOOL, C_FLOAT64, C_INT32, CCopasiParameterGroup::CCopasiParameterGroup(), CCopasiParameter::CN, CCopasiParameter::DOUBLE, CCopasiObject::getCN(), SCAN_BREAK, SCAN_LINEAR, SCAN_RANDOM, and CCopasiParameter::UINT.

Referenced by addScanItem(), and ScanWidget::slotAddItem().

150 {
151  CCopasiParameterGroup * tmp = new CCopasiParameterGroup("ScanItem");
152 
153  //create common parameters
154  tmp->addParameter("Number of steps", CCopasiParameter::UINT, (unsigned C_INT32) steps);
155  tmp->addParameter("Type", CCopasiParameter::UINT, (unsigned C_INT32) type);
156 
157  if (obj)
158  tmp->addParameter("Object", CCopasiParameter::CN, obj->getCN());
159  else
161 
162  //create specific parameters
163  if ((type == SCAN_LINEAR) || (type == SCAN_RANDOM))
164  {
165  tmp->addParameter("Minimum", CCopasiParameter::DOUBLE, (C_FLOAT64) 0.0);
166  tmp->addParameter("Maximum", CCopasiParameter::DOUBLE, (C_FLOAT64) 1.0);
167  tmp->addParameter("log", CCopasiParameter::BOOL, false);
168  }
169 
170  if (type == SCAN_RANDOM)
171  {
172  tmp->addParameter("Distribution type", CCopasiParameter::UINT, (unsigned C_INT32)0);
173  }
174 
175  if (type == SCAN_BREAK)
176  {
177  tmp->addParameter("Report break", CCopasiParameter::UINT, (unsigned C_INT32)0);
178  tmp->addParameter("Plot break", CCopasiParameter::UINT, (unsigned C_INT32)0);
179  }
180 
181  return tmp;
182 }
virtual CCopasiObjectName getCN() const
#define C_INT32
Definition: copasi.h:90
#define C_FLOAT64
Definition: copasi.h:92
bool addParameter(const CCopasiParameter &parameter)
void CScanProblem::fixBuild81 ( )

Fix files written with Version 4.12.81 and earlier, which wrote the exp(mean) and exp(std. deviation) for normal random distributions in the scan task.

Definition at line 189 of file CScanProblem.cpp.

References CCopasiParameterGroup::beginIndex(), CCopasiParameterGroup::endIndex(), CCopasiParameterGroup::getParameter(), CCopasiParameter::getValue(), CCopasiParameter::GROUP, mpScanItems, CCopasiParameter::Value::pBOOL, CCopasiParameter::Value::pDOUBLE, CCopasiParameter::Value::pUINT, SCAN_RANDOM, and CCopasiParameter::setValue().

Referenced by CScanTask::fixBuild81().

190 {
193 
194  for (; it != end; ++it)
195  {
196  if ((*it)->getType() != CCopasiParameter::GROUP)
197  {
198  continue;
199  }
200 
201  CCopasiParameterGroup * pGroup = static_cast< CCopasiParameterGroup * >(*it);
202  CCopasiParameter * pParam = pGroup->getParameter("Type");
203 
204  if (pParam == NULL || * (Type *) pParam->getValue().pUINT != SCAN_RANDOM)
205  {
206  continue;
207  }
208 
209  // Check whether distribution type is set and not uniform
210  pParam = pGroup->getParameter("Distribution type");
211 
212  if (pParam == NULL || * (Type *) pParam->getValue().pUINT == 0)
213  {
214  continue;
215  }
216 
217  // Check whether log is set and true
218  pParam = pGroup->getParameter("log");
219 
220  if (pParam == NULL || * pParam->getValue().pBOOL == false)
221  {
222  continue;
223  }
224 
225  // We need to fix min and max
226  pParam = pGroup->getParameter("Minimum");
227 
228  if (pParam != NULL)
229  {
230  pParam->setValue(log(*pParam->getValue().pDOUBLE));
231  }
232 
233  pParam = pGroup->getParameter("Maximum");
234 
235  if (pParam != NULL)
236  {
237  pParam->setValue(log(*pParam->getValue().pDOUBLE));
238  }
239  }
240 
241  return;
242 }
bool setValue(const CType &value)
index_iterator endIndex() const
index_iterator beginIndex() const
const Value & getValue() const
unsigned C_INT32 * pUINT
CCopasiParameter * getParameter(const std::string &name)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
parameterGroup::iterator index_iterator
bool CScanProblem::getContinueFromCurrentState ( ) const

Retrieve whether the subtask should continue with its last result.

Definition at line 94 of file CScanProblem.cpp.

References CCopasiParameter::getValue(), and CCopasiParameter::Value::pBOOL.

Referenced by CSEDMLExporter::createScanTask(), CScanMethod::init(), CScanTask::initSubtask(), CScanMethod::isValidProblem(), CScanWidgetTask::load(), and CScanWidgetTask::save().

95 {return * getValue("Adjust initial conditions").pBOOL;}
const Value & getValue() const
size_t CScanProblem::getNumberOfScanItems ( ) const
const bool & CScanProblem::getOutputInSubtask ( ) const

Ask if output should be done after every step of the subtask.

Definition at line 84 of file CScanProblem.cpp.

References CCopasiParameter::getValue(), and CCopasiParameter::Value::pBOOL.

Referenced by CScanWidgetTask::load(), and CScanWidgetTask::save().

85 {return * getValue("Output in subtask").pBOOL;}
const Value & getValue() const
const CCopasiParameterGroup * CScanProblem::getScanItem ( size_t  index) const

Definition at line 108 of file CScanProblem.cpp.

References CCopasiParameterGroup::getParameter(), CCopasiParameter::getType(), CCopasiParameter::GROUP, and mpScanItems.

Referenced by CSEDMLExporter::createScanTask(), CScanMethod::init(), CScanMethod::isValidProblem(), ScanWidget::loadTask(), and ScanWidget::saveTask().

109 {
111 
112  if (tmp->getType() != CCopasiParameter::GROUP)
113  {
114  // ERROR: not a parameter group!!!
115  return NULL;
116  }
117 
118  return (CCopasiParameterGroup*)tmp;
119 }
const CCopasiParameter::Type & getType() const
CCopasiParameter * getParameter(const std::string &name)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
CCopasiParameterGroup * CScanProblem::getScanItem ( size_t  index)

Definition at line 121 of file CScanProblem.cpp.

References CCopasiParameterGroup::getParameter(), CCopasiParameter::getType(), CCopasiParameter::GROUP, and mpScanItems.

122 {
124 
125  if (tmp->getType() != CCopasiParameter::GROUP)
126  {
127  // ERROR: not a parameter group!!!
128  return NULL;
129  }
130 
131  return (CCopasiParameterGroup*)tmp;
132 }
const CCopasiParameter::Type & getType() const
CCopasiParameter * getParameter(const std::string &name)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
CCopasiTask::Type CScanProblem::getSubtask ( ) const

Get the type of the subtask.

Definition at line 74 of file CScanProblem.cpp.

References CCopasiParameter::getValue(), and CCopasiParameter::Value::pUINT.

Referenced by COutputAssistant::createPlot(), CSEDMLExporter::createScanTask(), CScanWidgetTask::load(), and CScanWidgetTask::save().

75 {return *(CCopasiTask::Type *) getValue("Subtask").pUINT;}
const Value & getValue() const
unsigned C_INT32 * pUINT
void CScanProblem::initializeParameter ( )
private

Initialize the method parameter

Definition at line 56 of file CScanProblem.cpp.

References CCopasiParameterGroup::addGroup(), CCopasiParameterGroup::addParameter(), CCopasiParameter::BOOL, C_INT32, CCopasiParameterGroup::getParameter(), mpScanItems, CCopasiTask::timeCourse, and CCopasiParameter::UINT.

Referenced by CScanProblem().

57 {
59 
60  addGroup("ScanItems");
61  mpScanItems = dynamic_cast<CCopasiParameterGroup*>(getParameter("ScanItems"));
62 
63  addParameter("Output in subtask", CCopasiParameter::BOOL, true);
64  addParameter("Adjust initial conditions", CCopasiParameter::BOOL, false);
65 }
#define C_INT32
Definition: copasi.h:90
bool addGroup(const std::string &name)
CCopasiParameter * getParameter(const std::string &name)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
bool addParameter(const CCopasiParameter &parameter)
void CScanProblem::load ( CReadConfig configBuffer,
CReadConfig::Mode  mode = CReadConfig::NEXT 
)

Load a scan problem

Parameters
CReadConfig &configBuffer
"CReadConfig::Modemode (Default: CReadConfig::NEXT)

Definition at line 99 of file CScanProblem.cpp.

101 {}
bool CScanProblem::removeScanItem ( const size_t &  index)

Definition at line 143 of file CScanProblem.cpp.

References mpScanItems, and CCopasiParameterGroup::removeParameter().

Referenced by ScanWidget::saveTask().

144 {
145  return mpScanItems->removeParameter(index);
146 }
bool removeParameter(const std::string &name)
CCopasiParameterGroup * mpScanItems
Definition: CScanProblem.h:46
void CScanProblem::setContinueFromCurrentState ( bool  aic)

Set whether the subtask should continue with its last result.

Definition at line 89 of file CScanProblem.cpp.

References CCopasiParameterGroup::setValue().

Referenced by SEDMLImporter::importTasks(), and CScanWidgetTask::save().

90 {
91  setValue("Adjust initial conditions", aic);
92 }
bool setValue(const std::string &name, const CType &value)
void CScanProblem::setOutputInSubtask ( bool  ois)

Set if output should be done after every step of the subtask.

Definition at line 79 of file CScanProblem.cpp.

References CCopasiParameterGroup::setValue().

Referenced by SEDMLImporter::importTasks(), and CScanWidgetTask::save().

80 {
81  setValue("Output in subtask", ois);
82 }
bool setValue(const std::string &name, const CType &value)
void CScanProblem::setSubtask ( CCopasiTask::Type  type)

Set the type of the subtask.

Definition at line 69 of file CScanProblem.cpp.

References C_INT32, and CCopasiParameterGroup::setValue().

Referenced by SEDMLImporter::importTasks(), and CScanWidgetTask::save().

70 {
71  setValue("Subtask", (unsigned C_INT32)type);
72 }
#define C_INT32
Definition: copasi.h:90
bool setValue(const std::string &name, const CType &value)

Member Data Documentation

CCopasiParameterGroup* CScanProblem::mpScanItems
private

This holds the scan items

Definition at line 46 of file CScanProblem.h.

Referenced by addScanItem(), clearScanItems(), fixBuild81(), getNumberOfScanItems(), getScanItem(), initializeParameter(), and removeScanItem().


The documentation for this class was generated from the following files: