#include <CExperimentSet.h>

Inheritance diagram for CExperimentSet:

Public Member Functions
CExperiment *	addExperiment (const CExperiment &experiment)

bool	calculateStatistics ()

	CExperimentSet (const CCopasiParameterGroup &group, const CDataContainer *pParent)

	CExperimentSet (const CDataContainer *pParent, const std::string &name="Experiment Set")

	CExperimentSet (const CExperimentSet &src, const CDataContainer *pParent)

bool	compile (const CMathContainer *pMathContainer)

virtual bool	elevateChildren ()

void	fixBuild55 ()

size_t	getDataPointCount () const

const CMatrix< C_FLOAT64 > &	getDependentData (const size_t &index) const

const CVector< size_t > &	getDependentDataCount () const

const CVector< C_FLOAT64 > &	getDependentErrorMean () const

const CVector< C_FLOAT64 > &	getDependentErrorMeanSD () const

const CVector< C_FLOAT64 > &	getDependentObjectiveValues () const

const CVector< const CObjectInterface * > &	getDependentObjects () const

const CVector< C_FLOAT64 > &	getDependentRMS () const

CExperiment *	getExperiment (const size_t &index)

const CExperiment *	getExperiment (const size_t &index) const

CExperiment *	getExperiment (const std::string &name)

const CExperiment *	getExperiment (const std::string &name) const

size_t	getExperimentCount () const

const CTaskEnum::Task &	getExperimentType (const size_t &index) const

std::vector< std::string >	getFileNames () const

const CMatrix< C_FLOAT64 > &	getIndependentData (const size_t &index) const

const size_t &	getValidValueCount () const

bool	hasDataForTaskType (const CTaskEnum::Task &type) const

size_t	keyToIndex (const std::string &key) const

void	removeExperiment (const size_t &index)

void	sort ()

virtual	~CExperimentSet ()

Public Member Functions inherited from CCopasiParameterGroup
bool	addGroup (const std::string &name)

void	addParameter (CCopasiParameter *pParameter)

bool	addParameter (const CCopasiParameter &parameter)

bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

CCopasiParameterGroup *	assertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
CType *	assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

index_iterator	beginIndex () const

const_name_iterator	beginName () const

	CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)

	CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")

void	clear ()

virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const

index_iterator	endIndex () const

const_name_iterator	endName () const

CCopasiParameterGroup &	getElementTemplates ()

const CCopasiParameterGroup &	getElementTemplates () const

CCopasiParameterGroup *	getGroup (const size_t &index)

const CCopasiParameterGroup *	getGroup (const size_t &index) const

CCopasiParameterGroup *	getGroup (const std::string &name)

const CCopasiParameterGroup *	getGroup (const std::string &name) const

virtual size_t	getIndex (const CDataObject *pObject) const

size_t	getIndex (const std::string &name) const

std::string	getKey (const size_t &index) const

std::string	getKey (const std::string &name) const

virtual const std::string &	getName (const size_t &index) const

virtual const CObjectInterface *	getObject (const CCommonName &cn) const

CCopasiParameter *	getParameter (const size_t &index)

const CCopasiParameter *	getParameter (const size_t &index) const

CCopasiParameter *	getParameter (std::string name)

const CCopasiParameter *	getParameter (std::string name) const

CCopasiParameter::Type	getType (const size_t &index) const

CCopasiParameter::Type	getType (const std::string &name) const

std::string	getUniqueParameterName (const CCopasiParameter *pParameter) const

template<class CType >
CType &	getValue (const size_t &index)

template<class CType >
const CType &	getValue (const size_t &index) const

template<class CType >
CType &	getValue (const std::string &name)

template<class CType >
const CType &	getValue (const std::string &name) const

bool	haveTemplate () const

virtual CUndoObjectInterface *	insert (const CData &data)

CCopasiParameterGroup &	operator= (const CCopasiParameterGroup &rhs)

virtual void	print (std::ostream *ostream) const

virtual bool	remove (CDataObject *pObject)

bool	removeParameter (CCopasiParameter *pParameter)

bool	removeParameter (const size_t &index)

bool	removeParameter (const std::string &name)

virtual void	setUserInterfaceFlag (const UserInterfaceFlag &flag)

template<class CType >
bool	setValue (const size_t &index, const CType &value)

template<class CType >
bool	setValue (const std::string &name, const CType &value)

size_t	size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const

bool	swap (const size_t &iFrom, const size_t &iTo)

bool	swap (index_iterator &from, index_iterator &to)

virtual CData	toData () const

virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)

virtual	~CCopasiParameterGroup ()

Public Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent)

	CCopasiParameter (const std::string &name, const Type &type, const void pValue=NULL, const CDataContainer pParent=NO_PARENT, const std::string &objectType="Parameter")

virtual CCommonName	getCN () const override

template<class CType >
const CType &	getDefault () const

virtual const std::string &	getKey () const override

virtual std::string	getObjectDisplayName () const override

const CCopasiParameter::Type &	getType () const

const UserInterfaceFlag &	getUserInterfaceFlag () const

template<class CType >
std::vector< std::pair< CType, CType > > &	getValidValues ()

template<class CType >
const std::vector< std::pair< CType, CType > > &	getValidValues () const

void *	getValidValuesPointer () const

template<class CType >
CType &	getValue ()

template<class CType >
const CType &	getValue () const

virtual void *	getValuePointer () const override

CDataObject *	getValueReference () const

bool	hasValidValues () const

bool	isBasic () const

bool	isDefault () const

bool	isEditable () const

bool	isUnsupported () const

bool	isValidValue (const bool &value) const

bool	isValidValue (const C_FLOAT64 &value) const

bool	isValidValue (const C_INT32 &value) const

bool	isValidValue (const CCommonName &value) const

template<class CType >
bool	isValidValue (const CType &) const

bool	isValidValue (const std::string &value) const

bool	isValidValue (const std::vector< CCopasiParameter * > &value) const

bool	isValidValue (const unsigned C_INT32 &value) const

CCopasiParameter &	operator= (const CCopasiParameter &rhs)

template<class CType >
bool	setDefault (const CType &defaultValue)

bool	setDefault (const std::vector< CCopasiParameter * > &defaultValue)

virtual bool	setObjectParent (const CDataContainer *pParent) override

template<class CType , class Enum >
bool	setValidValues (const CEnumAnnotation< CType, Enum > &validValues)

template<class CType >
bool	setValidValues (const std::vector< std::pair< CType, CType > > &validValues)

template<class CType >
bool	setValue (const CType &value)

bool	setValue (const std::vector< CCopasiParameter * > &value)

virtual	~CCopasiParameter ()

Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)

virtual bool	appendDeletedDependentData (CUndoData &undoData) const

	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)

	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

virtual std::string	getChildObjectUnits (const CDataObject *pObject) const

void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const

virtual objectMap &	getObjects ()

virtual const objectMap &	getObjects () const

virtual const std::string	getUnits () const override

virtual const CDataObject *	getValueObject () const override

void	objectRenamed (CDataObject *pObject, const std::string &oldName)

virtual	~CDataContainer ()

Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)

void	addReference (const CDataContainer *pReference)

virtual void	calculateValue () override

	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)

virtual void	destruct () override

virtual const CDataObject *	getDataObject () const override

CDataContainer *	getObjectAncestor (const std::string &type) const

CDataModel *	getObjectDataModel () const

const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const

const std::string &	getObjectName () const

CDataContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override

virtual const CValidity &	getValidity () const override

bool	hasFlag (const Flag &flag) const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override

bool	prerequisitsContains (const DataObjectSet &objects) const

void	removeIssue (const CIssue &issue)

void	removeReference (const CDataContainer *pReference)

bool	setObjectName (const std::string &name)

void	validityChanged (const CValidity &changedValidity) override

void	validityRemoved (const CValidity &changedValidity)

virtual	~CDataObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

	CObjectInterface (const CObjectInterface &src)

virtual	~CObjectInterface ()

Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()

	CUndoObjectInterface (const CUndoObjectInterface &src)

bool	generateUuid ()

const xg::Guid &	getUuid () const

bool	setUuid (const std::string &uuid)

bool	setUuid (const xg::Guid &uuid)

virtual	~CUndoObjectInterface ()

Protected Member Functions
	CExperimentSet (const CExperimentSet &src)

Protected Member Functions inherited from CCopasiParameterGroup
	CCopasiParameterGroup ()

Protected Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src)

Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

	CDataContainer (const CDataContainer &src)

void	initObjects ()

Protected Member Functions inherited from CDataObject
	CDataObject ()

	CDataObject (const std::string &name, const CDataContainer pParent=static_cast< CDataContainer >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Private Member Functions
void	initializeParameter ()

Private Attributes
CVector< size_t >	mDependentDataCount

CVector< C_FLOAT64 >	mDependentErrorMean

CVector< C_FLOAT64 >	mDependentErrorMeanSD

CVector< C_FLOAT64 >	mDependentObjectiveValues

CVector< const CObjectInterface * >	mDependentObjects

CVector< C_FLOAT64 >	mDependentRMS

size_t	mNonExperiments

std::vector< CExperiment * > *	mpExperiments

size_t	mValidValueCount

Additional Inherited Members
Public Types inherited from CCopasiParameterGroup
typedef CDataObjectMap::const_type_iterator< CCopasiParameter >	const_name_iterator

typedef std::vector< CCopasiParameter * >	elements

typedef elements::iterator	index_iterator

typedef CDataObjectMap::type_iterator< CCopasiParameter >	name_iterator

Public Types inherited from CCopasiParameter
enum class	eUserInterfaceFlag { editable , basic , unsupported , __SIZE }

enum class	Type { DOUBLE = 0 , UDOUBLE , INT , UINT , BOOL , GROUP , STRING , CN , KEY , FILE , EXPRESSION , INVALID , __SIZE }

typedef CFlags< eUserInterfaceFlag >	UserInterfaceFlag

Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap

Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet

enum	Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE }

Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList

typedef std::set< const CObjectInterface * >	ObjectSet

Static Public Member Functions inherited from CCopasiParameter
static void	allocateValidValues (const Type &type, void *&pValidValues)

static void	allocateValue (const Type &type, void *&pValue)

static void	assignValue (const Type &type, void &pValue, const void pNewValue)

static void	deleteValidValues (const Type &type, void *&pValidValues)

static void	deleteValue (const Type &type, void *&pValue)

static CCopasiParameter *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)

static void	sanitizeObjectName (std::string &name)

Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)

static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)

Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Static Public Attributes inherited from CCopasiParameter
static const CEnumAnnotation< std::string, Type >	TypeName

static const CEnumAnnotation< std::string, Type >	XMLType

Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Protected Attributes inherited from CCopasiParameter
std::string	mKey

void *	mpDefault

void *	mpValidValues

void *	mpValue

CDataObject *	mpValueReference

UserInterfaceFlag	mUserInterfaceFlag

Protected Attributes inherited from CDataContainer
objectMap	mObjects

Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits

std::set< CDataContainer * >	mReferences

Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Constructor & Destructor Documentation

◆ CExperimentSet() [1/4]

CExperimentSet::CExperimentSet ( const CExperimentSet & src )

protected

◆ CExperimentSet() [2/4]

CExperimentSet::CExperimentSet	(	const CDataContainer *	pParent,
		const std::string &	name = `"Experiment Set"`
	)

Default constructor

Parameters

const	CDataContainer * pParent
const	std::string & name (default: Experiment Set)

References initializeParameter().

◆ CExperimentSet() [3/4]

CExperimentSet::CExperimentSet	(	const CExperimentSet &	src,
		const CDataContainer *	pParent
	)

Copy constructor

Parameters

const	CExperimentSet & src
const	CDataContainer * pParent (default: src data model)

References initializeParameter().

◆ CExperimentSet() [4/4]

CExperimentSet::CExperimentSet	(	const CCopasiParameterGroup &	group,
		const CDataContainer *	pParent
	)

Specific constructor used for reading COPASI files

Parameters

const	CCopasiParameterGroup & group
const	CDataContainer * pParent (default: group data model)

References initializeParameter().

◆ ~CExperimentSet()

CExperimentSet::~CExperimentSet ( )

virtual

Destructor

Member Function Documentation

◆ addExperiment()

CExperiment * CExperimentSet::addExperiment ( const CExperiment & experiment )

Add an experiment

Returns: CExperiment * experiment

References CCopasiParameterGroup::addParameter(), CDataObject::getObjectName(), CCopasiParameterGroup::getParameter(), NO_PARENT, CDataObject::setObjectName(), sort(), and StringPrint().

◆ calculateStatistics()

bool CExperimentSet::calculateStatistics ( )

Calculate statistics across all experiments.

Returns: bool success

References COutputInterface::AFTER, CVectorCore< CType >::array(), C_FLOAT64, CDataObject::getObjectAncestor(), max, mDependentDataCount, mDependentErrorMean, mDependentErrorMeanSD, mDependentObjectiveValues, mDependentObjects, mDependentRMS, min, mNonExperiments, mpExperiments, mValidValueCount, CCopasiTask::output(), CVector< CType >::resize(), CVectorCore< CType >::size(), and CTaskEnum::timeCourse.

Referenced by CFitProblem::calculateStatistics().

◆ compile()

bool CExperimentSet::compile ( const CMathContainer * pMathContainer )

Compile the experiment set. This function must be called before any evaluations can be performed.

Parameters

const CMathContainer * pMathContainer

Returns: bool success

References CVectorCore< CType >::array(), CCopasiMessage::ERROR, CLocaleString::fromUtf8(), MCFitting, mDependentDataCount, mDependentErrorMean, mDependentErrorMeanSD, mDependentObjectiveValues, mDependentObjects, mDependentRMS, mNonExperiments, mpExperiments, pMathContainer, CVector< CType >::resize(), CVectorCore< CType >::size(), and sort().

Referenced by CFitProblem::initialize(), and CFitTask::initialize().

◆ elevateChildren()

bool CExperimentSet::elevateChildren ( )

virtual

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns: bool success

Reimplemented from CCopasiParameterGroup.

References CCopasiParameterGroup::beginIndex(), CCopasiParameterGroup::endIndex(), mpExperiments, CCopasiParameter::mpValue, and sort().

Referenced by initializeParameter(), and CCrossValidationSet::initializeParameter().

◆ fixBuild55()

void CExperimentSet::fixBuild55 ( )

Fix files written with Version 4.10.55, which wrote the square root of user defined weights for the parameter fitting task

References mNonExperiments, and mpExperiments.

Referenced by CFitProblem::fixBuild55().

◆ getDataPointCount()

size_t CExperimentSet::getDataPointCount ( ) const

Retrieve the number of data points of all experiments combined.

Returns: size_t dataPointCount

References mNonExperiments, and mpExperiments.

Referenced by CFitProblem::calculateCrossValidation(), CFitProblem::initialize(), and CFitProblem::setResidualsRequired().

◆ getDependentData()

const CMatrix< C_FLOAT64 > & CExperimentSet::getDependentData ( const size_t & index ) const

Retrieve the dependent data of the indexed experiment.

Parameters

const size_t & index,

Returns: const CMatrix< C_FLOAT64 > & dependentData

References CExperiment::getDependentData(), and getExperiment().

◆ getDependentDataCount()

const CVector< size_t > & CExperimentSet::getDependentDataCount ( ) const

Retrieve the number of valid data points per dependent variable

References mDependentDataCount.

◆ getDependentErrorMean()

const CVector< C_FLOAT64 > & CExperimentSet::getDependentErrorMean ( ) const

Retrieve all dependent data error mean values.

Returns: const CVector< C_FLOAT64 > & dependentErrorMean

References mDependentErrorMean.

◆ getDependentErrorMeanSD()

const CVector< C_FLOAT64 > & CExperimentSet::getDependentErrorMeanSD ( ) const

Retrieve all dependent data error mean std. deviations.

Returns: const CVector< C_FLOAT64 > & dependentErrorMeanSD

References mDependentErrorMeanSD.

◆ getDependentObjectiveValues()

const CVector< C_FLOAT64 > & CExperimentSet::getDependentObjectiveValues ( ) const

Retrieve all dependent data objective values.

Returns: const CVector< C_FLOAT64 > & dependentObjectiveValues

References mDependentObjectiveValues.

◆ getDependentObjects()

const CVector< const CObjectInterface * > & CExperimentSet::getDependentObjects ( ) const

Retrieve the list of dependent data objects

Returns: const std::vector< const CObjectInterface * > & dependentObjects

References mDependentObjects.

Referenced by CFitProblem::initialize().

◆ getDependentRMS()

const CVector< C_FLOAT64 > & CExperimentSet::getDependentRMS ( ) const

Retrieve all dependent data objective values.

Returns: const CVector< C_FLOAT64 > & dependentRMS

References mDependentRMS.

◆ getExperiment() [1/4]

CExperiment * CExperimentSet::getExperiment ( const size_t & index )

Retrieve the indexed experiment

Parameters

const size_t & index,

Returns: CExperiment * experiment

References mNonExperiments, and mpExperiments.

Referenced by CFitProblem::calculate(), CFitProblem::calculateCrossValidation(), CFitProblem::calculateStatistics(), CDataModel::copyExperimentalDataTo(), COutputAssistant::createDefaultOutput(), CModel::createEventsForTimeseries(), CFitProblem::createParameterSets(), CFitProblem::elevateChildren(), CDataModel::exportCombineArchive(), CDataModel::exportShinyArchive(), getDependentData(), getExperimentType(), getIndependentData(), CFitProblem::initialize(), keyToIndex(), CDataModel::openCombineArchive(), CFitProblem::printResult(), CFitProblem::restore(), CExperimentFileInfo::sync(), and CFitProblem::updateContainer().

◆ getExperiment() [2/4]

const CExperiment * CExperimentSet::getExperiment ( const size_t & index ) const

Retrieve the indexed experiment

Parameters

const size_t & index,

Returns: const CExperiment * experiment

References mNonExperiments, and mpExperiments.

◆ getExperiment() [3/4]

CExperiment * CExperimentSet::getExperiment ( const std::string & name )

Retrieve the indexed experiment

Parameters

const std::string & name,

Returns: CExperiment * experiment

References CCopasiParameterGroup::getGroup().

◆ getExperiment() [4/4]

const CExperiment * CExperimentSet::getExperiment ( const std::string & name ) const

Retrieve the indexed experiment

Parameters

const std::string & name,

Returns: const CExperiment * experiment

References CCopasiParameterGroup::getGroup().

◆ getExperimentCount()

size_t CExperimentSet::getExperimentCount ( ) const

Retrieve the number of the experiments in the set

Returns: size_t experimentCount

References mNonExperiments, and CCopasiParameterGroup::size().

Referenced by CFitProblem::calculate(), CFitProblem::calculateCrossValidation(), CFitProblem::calculateStatistics(), CDataModel::copyExperimentalDataTo(), COutputAssistant::createDefaultOutput(), CFitProblem::createParameterSets(), CDataModel::exportCombineArchive(), CDataModel::exportShinyArchive(), CFitProblem::initialize(), CDataModel::openCombineArchive(), CFitProblem::printResult(), CFitProblem::setSolution(), CExperimentFileInfo::sync(), and CFitProblem::updateContainer().

◆ getExperimentType()

const CTaskEnum::Task & CExperimentSet::getExperimentType ( const size_t & index ) const

Retrieve the indexed experiment type

Parameters

const size_t & index,

Returns: const CCopasiTasK::Type & experimentType

References getExperiment(), and CExperiment::getExperimentType().

◆ getFileNames()

std::vector< std::string > CExperimentSet::getFileNames ( ) const

Retrieve the list of file names

Returns: std::vector< std::string > fileNames

References mNonExperiments, and mpExperiments.

Referenced by CDataModel::copyExperimentalDataTo(), CDataModel::exportCombineArchive(), and CDataModel::exportShinyArchive().

◆ getIndependentData()

const CMatrix< C_FLOAT64 > & CExperimentSet::getIndependentData ( const size_t & index ) const

Retrieve the independent data of the indexed experiment.

Parameters

const size_t & index,

Returns: const CMatrix< C_FLOAT64 > & independentData

References getExperiment(), and CExperiment::getIndependentData().

◆ getValidValueCount()

const size_t & CExperimentSet::getValidValueCount ( ) const

Retrieve the count of valid data points of all experiments combined.

Returns: size_t count

References mValidValueCount.

Referenced by CFitProblem::calculateStatistics().

◆ hasDataForTaskType()

bool CExperimentSet::hasDataForTaskType ( const CTaskEnum::Task & type ) const

Check whether the set contains data for the the given task type

Parameters

const CTaskEnum::Task & type

Returns: bool hasDataForTaskType

References mNonExperiments, and mpExperiments.

Referenced by CFitProblem::initialize().

◆ initializeParameter()

void CExperimentSet::initializeParameter ( )

private

Allocates all group parameters and assures that they are properly initialized.

References elevateChildren().

Referenced by CExperimentSet().

◆ keyToIndex()

size_t CExperimentSet::keyToIndex ( const std::string & key ) const

Convert an experiment key to an index

Parameters

const std::string & key

Returns: size_t index

References C_INVALID_INDEX, CKeyFactory::get(), getExperiment(), CRootContainer::getKeyFactory(), and CCopasiParameterGroup::size().

Referenced by CFitProblem::initialize().

◆ removeExperiment()

void CExperimentSet::removeExperiment ( const size_t & index )

Remove an experiment from the set

Parameters

const size_t & index

References mNonExperiments, and CCopasiParameterGroup::removeParameter().

Referenced by CExperimentFileInfo::removeLastExperiments().

◆ sort()

void CExperimentSet::sort ( )

Sort the experiments in the set

References CCopasiParameterGroup::beginIndex(), CExperiment::compare(), CCopasiParameterGroup::endIndex(), mNonExperiments, mpExperiments, and CCopasiParameterGroup::swap().

Referenced by addExperiment(), compile(), elevateChildren(), and CExperimentFileInfo::sync().

Member Data Documentation

◆ mDependentDataCount

CVector< size_t > CExperimentSet::mDependentDataCount

private

A list of the number of data points for each dependent object;

Referenced by calculateStatistics(), compile(), and getDependentDataCount().

◆ mDependentErrorMean

CVector< C_FLOAT64 > CExperimentSet::mDependentErrorMean

private

A list of all dependent data error mean values;

Referenced by calculateStatistics(), compile(), and getDependentErrorMean().

◆ mDependentErrorMeanSD

CVector< C_FLOAT64 > CExperimentSet::mDependentErrorMeanSD

private

A list of all dependent data error mean std. deviations;

Referenced by calculateStatistics(), compile(), and getDependentErrorMeanSD().

◆ mDependentObjectiveValues

CVector< C_FLOAT64 > CExperimentSet::mDependentObjectiveValues

private

A list of all dependent data objective values;

Referenced by calculateStatistics(), compile(), and getDependentObjectiveValues().

◆ mDependentObjects

CVector< const CObjectInterface * > CExperimentSet::mDependentObjects

private

A set of all dependent data objects;

Referenced by calculateStatistics(), compile(), and getDependentObjects().

◆ mDependentRMS

CVector< C_FLOAT64 > CExperimentSet::mDependentRMS

private

A list of all dependent data objective values;

Referenced by calculateStatistics(), compile(), and getDependentRMS().

◆ mNonExperiments

size_t CExperimentSet::mNonExperiments

private

The number of parameters which are not of type CExperiment

Referenced by calculateStatistics(), compile(), fixBuild55(), getDataPointCount(), getExperiment(), getExperimentCount(), getFileNames(), hasDataForTaskType(), removeExperiment(), and sort().

◆ mpExperiments

std::vector< CExperiment * >* CExperimentSet::mpExperiments

private

This is realized a CCopasiParameter type GROUP

Referenced by calculateStatistics(), compile(), elevateChildren(), fixBuild55(), getDataPointCount(), getExperiment(), getFileNames(), hasDataForTaskType(), and sort().

◆ mValidValueCount

size_t CExperimentSet::mValidValueCount

private

The total count of valid data values.

Referenced by calculateStatistics(), and getValidValueCount().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

◆ CExperimentSet() [1/4]

◆ CExperimentSet() [2/4]

◆ CExperimentSet() [3/4]

◆ CExperimentSet() [4/4]

◆ ~CExperimentSet()

Member Function Documentation

◆ addExperiment()

◆ calculateStatistics()

◆ compile()

◆ elevateChildren()

◆ fixBuild55()

◆ getDataPointCount()

◆ getDependentData()

◆ getDependentDataCount()

◆ getDependentErrorMean()

◆ getDependentErrorMeanSD()

◆ getDependentObjectiveValues()

◆ getDependentObjects()

◆ getDependentRMS()

◆ getExperiment() [1/4]

◆ getExperiment() [2/4]

◆ getExperiment() [3/4]

◆ getExperiment() [4/4]

◆ getExperimentCount()

◆ getExperimentType()

◆ getFileNames()

◆ getIndependentData()

◆ getValidValueCount()

◆ hasDataForTaskType()

◆ initializeParameter()

◆ keyToIndex()

◆ removeExperiment()

◆ sort()

Member Data Documentation

◆ mDependentDataCount

◆ mDependentErrorMean

◆ mDependentErrorMeanSD

◆ mDependentObjectiveValues

◆ mDependentObjects

◆ mDependentRMS

◆ mNonExperiments

◆ mpExperiments

◆ mValidValueCount