CTableauMatrix Class Reference

#include <CTableauMatrix.h>

Public Member Functions
void	addLine (const CTableauLine *src, const bool &check=true)
std::list< const CTableauLine * >::iterator	begin ()
std::list< const CTableauLine * >::const_iterator	begin () const
	CTableauMatrix ()
	CTableauMatrix (const std::vector< std::vector< double > > &stoi, const size_t &reversibleNumber)
std::list< const CTableauLine * >::iterator	end ()
std::list< const CTableauLine * >::const_iterator	end () const
void	removeLine (const std::list< const CTableauLine * >::iterator line)
size_t	size () const
	~CTableauMatrix ()

Private Member Functions
bool	isValid (const CTableauLine *src)

Private Attributes
std::list< const CTableauLine * >::iterator	mFirstIrreversible
std::list< const CTableauLine * >	mLine

Friends
std::ostream &	operator<< (std::ostream &, const CTableauMatrix &)

Detailed Description

CTableauMatrix class. Used to calculate elementary flux modes

Created for Copasi by Stefan Hoops 2002-05-08 (C) Stefan Hoops 2002

Constructor & Destructor Documentation

CTableauMatrix() [1/2]

CTableauMatrix::CTableauMatrix

(

)

Default constructor

CTableauMatrix class. Used to calculate elementary flux modes

Created for Copasi by Stefan Hoops 2002-05-08 (C) Stefan Hoops 2002

CTableauMatrix() [2/2]

CTableauMatrix::CTableauMatrix	(	const std::vector< std::vector< double > > &	stoi,
		const size_t &	reversibleNumber
	)

Specific constructor The first reversibleNumber lines of stoi must be reversible reactions. Note: stoi is actually the transpose of the stoichiometry matrix

Parameters

const	std::vector < std::vector < double > > & stoi
const	size_t & reversibleNumber

~CTableauMatrix()

CTableauMatrix::~CTableauMatrix

(

)

Destructor

References mLine, and pdelete.

Member Function Documentation

addLine()

void CTableauMatrix::addLine	(	const CTableauLine *	src,
		const bool &	check = true
	)

Add a line to the matrix

Parameters

const	CTableauLine * src
const	bool & check (Default: true)

References CTableauLine::isReversible(), isValid(), mFirstIrreversible, mLine, and pdelete.

Referenced by CEFMAlgorithm::calculateNextTableau().

begin() [1/2]

std::list< const CTableauLine * >::iterator CTableauMatrix::begin

(

)

Retrieves the first line from the matrix

Returns

list< const CTableauLine * >::iterator begin

References mLine.

Referenced by CEFMAlgorithm::buildFluxModes(), CEFMAlgorithm::calculateCombinations(), CEFMAlgorithm::calculateNextTableau(), and CEFMAlgorithm::CSpeciesOrderNode::update().

begin() [2/2]

std::list< const CTableauLine * >::const_iterator CTableauMatrix::begin

(

)

const

Retrieves the first line from the matrix

Returns

list< const CTableauLine * >::const_iterator begin

References mLine.

end() [1/2]

std::list< const CTableauLine * >::iterator CTableauMatrix::end

(

)

Retrieves the last line from the matrix

Returns

list< const CTableauLine * >::iterator end

References mLine.

Referenced by CEFMAlgorithm::buildFluxModes(), CEFMAlgorithm::calculateCombinations(), CEFMAlgorithm::calculateNextTableau(), and CEFMAlgorithm::CSpeciesOrderNode::update().

end() [2/2]

std::list< const CTableauLine * >::const_iterator CTableauMatrix::end

(

)

const

Retrieves the last line from the matrix

Returns

list< const CTableauLine * >::const_iterator end

References mLine.

isValid()

bool CTableauMatrix::isValid ( const CTableauLine *  src )

private

Check whether the new line fullfills the constraints

Parameters

const CTableauLine *

src

References CTableauLine::getScore(), mLine, and removeLine().

Referenced by addLine().

removeLine()

void CTableauMatrix::removeLine

(

const std::list< const CTableauLine * >::iterator

line

)

Remove the indexed line of the matrix

Parameters

list< const CTableauLine * >::const_iterator

line

References mFirstIrreversible, and mLine.

Referenced by CEFMAlgorithm::calculateNextTableau(), and isValid().

size()

size_t CTableauMatrix::size

(

)

const

Retrieve the number of tableau lines

Returns

size_t size

References mLine.

Referenced by CEFMAlgorithm::calculateNextTableau().

Friends And Related Function Documentation

operator<<

std::ostream& operator<< ( std::ostream &  os, const CTableauMatrix &  m  )

friend

Member Data Documentation

mFirstIrreversible

std::list< const CTableauLine * >::iterator CTableauMatrix::mFirstIrreversible

private

Iterator pointing to the first irreversible reaction

Referenced by addLine(), and removeLine().

mLine

std::list< const CTableauLine * > CTableauMatrix::mLine

private

Vector containing the lines of the Matrix @associates <{CTableauLine}> @supplierCardinality 0..*

Referenced by addLine(), begin(), end(), isValid(), removeLine(), size(), and ~CTableauMatrix().

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The documentation for this class was generated from the following files:

• CTableauMatrix.h
• CTableauMatrix.cpp