COPASI API
4.16.103
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#include <CRealProblem.h>
Public Member Functions | |
virtual bool | calculate () |
CRealProblem () | |
~CRealProblem () | |
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COptItem & | addOptItem (const CCopasiObjectName &objectCN) |
virtual bool | calculateStatistics (const C_FLOAT64 &factor=1.0e-003, const C_FLOAT64 &resolution=1.0e-009) |
virtual bool | checkFunctionalConstraints () |
virtual bool | checkParametricConstraints () |
COptProblem (const CCopasiTask::Type &type=CCopasiTask::optimization, const CCopasiContainer *pParent=NULL) | |
COptProblem (const COptProblem &src, const CCopasiContainer *pParent=NULL) | |
virtual bool | elevateChildren () |
const bool & | getCalculateStatistics () const |
const C_FLOAT64 & | getCalculateValue () const |
const std::vector < UpdateMethod * > & | getCalculateVariableUpdateMethods () const |
const std::vector< COptItem * > & | getConstraintList () const |
const C_FLOAT64 & | getExecutionTime () const |
const unsigned C_INT32 & | getFunctionEvaluations () const |
const std::string | getObjectiveFunction () |
COptItem & | getOptItem (const size_t &index) |
const std::vector< COptItem * > & | getOptItemList () const |
size_t | getOptItemSize () const |
const bool & | getRandomizeStartValues () const |
const C_FLOAT64 & | getSolutionValue () const |
const CVector< C_FLOAT64 > & | getSolutionVariables () const |
CCopasiTask::Type | getSubtaskType () const |
const CVector< C_FLOAT64 > & | getVariableGradients () const |
size_t | getVariableSize () const |
void | incrementEvaluations (unsigned C_INT32 increment) |
virtual bool | initialize () |
virtual bool | initializeSubtaskBeforeOutput () |
const bool & | maximize () const |
virtual void | print (std::ostream *ostream) const |
virtual void | printResult (std::ostream *ostream) const |
void | randomizeStartValues () |
void | rememberStartValues () |
bool | removeOptItem (const size_t &index) |
void | reset () |
void | resetEvaluations () |
virtual bool | restore (const bool &updateModel) |
void | restoreModel (const bool &updateModel) |
void | setCalculateStatistics (const bool &calculate) |
virtual bool | setCallBack (CProcessReport *pCallBack) |
void | setMaximize (const bool &maximize) |
virtual bool | setModel (CModel *pModel) |
bool | setObjectiveFunction (const std::string &infix) |
void | setRandomizeStartValues (const bool &randomize) |
virtual bool | setSolution (const C_FLOAT64 &value, const CVector< C_FLOAT64 > &variables) |
bool | setSubtaskType (const CCopasiTask::Type &subtaskType) |
bool | swapOptItem (const size_t &iFrom, const size_t &iTo) |
virtual | ~COptProblem () |
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CCopasiProblem (const CCopasiProblem &src, const CCopasiContainer *pParent=NULL) | |
CModel * | getModel () const |
const CCopasiTask::Type & | getType () const |
virtual | ~CCopasiProblem () |
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bool | addGroup (const std::string &name) |
bool | addParameter (const CCopasiParameter ¶meter) |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type) |
template<class CType > | |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value) |
void | addParameter (CCopasiParameter *pParameter) |
CCopasiParameterGroup * | assertGroup (const std::string &name) |
template<class CType > | |
CCopasiParameter * | assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) |
index_iterator | beginIndex () const |
name_iterator | beginName () const |
CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | |
CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | |
void | clear () |
index_iterator | endIndex () const |
name_iterator | endName () const |
CCopasiParameterGroup * | getGroup (const std::string &name) |
const CCopasiParameterGroup * | getGroup (const std::string &name) const |
CCopasiParameterGroup * | getGroup (const size_t &index) |
const CCopasiParameterGroup * | getGroup (const size_t &index) const |
size_t | getIndex (const std::string &name) const |
std::string | getKey (const std::string &name) const |
std::string | getKey (const size_t &index) const |
virtual const std::string & | getName (const size_t &index) const |
virtual const CObjectInterface * | getObject (const CCopasiObjectName &cn) const |
CCopasiParameter * | getParameter (const std::string &name) |
const CCopasiParameter * | getParameter (const std::string &name) const |
CCopasiParameter * | getParameter (const size_t &index) |
const CCopasiParameter * | getParameter (const size_t &index) const |
CCopasiParameter::Type | getType (const std::string &name) const |
CCopasiParameter::Type | getType (const size_t &index) const |
std::string | getUniqueParameterName (const CCopasiParameter *pParameter) const |
const CCopasiParameter::Value & | getValue (const std::string &name) const |
const CCopasiParameter::Value & | getValue (const size_t &index) const |
CCopasiParameter::Value & | getValue (const std::string &name) |
CCopasiParameter::Value & | getValue (const size_t &index) |
CCopasiParameterGroup & | operator= (const CCopasiParameterGroup &rhs) |
bool | removeParameter (const std::string &name) |
bool | removeParameter (const size_t &index) |
template<class CType > | |
bool | setValue (const std::string &name, const CType &value) |
template<class CType > | |
bool | setValue (const size_t &index, const CType &value) |
size_t | size () const |
bool | swap (const size_t &iFrom, const size_t &iTo) |
bool | swap (index_iterator &from, index_iterator &to) |
virtual | ~CCopasiParameterGroup () |
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CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | |
CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | |
virtual CCopasiObjectName | getCN () const |
virtual const std::string & | getKey () const |
virtual std::string | getObjectDisplayName (bool regular=true, bool richtext=false) const |
const CCopasiParameter::Type & | getType () const |
const Value & | getValue () const |
Value & | getValue () |
virtual void * | getValuePointer () const |
CCopasiObject * | getValueReference () const |
bool | isValidValue (const C_FLOAT64 &value) const |
bool | isValidValue (const C_INT32 &value) const |
bool | isValidValue (const unsigned C_INT32 &value) const |
bool | isValidValue (const bool &value) const |
bool | isValidValue (const std::string &value) const |
bool | isValidValue (const CCopasiObjectName &value) const |
bool | isValidValue (const std::vector< CCopasiParameter * > &value) const |
CCopasiParameter & | operator= (const CCopasiParameter &rhs) |
template<class CType > | |
bool | setValue (const CType &value) |
bool | setValue (const std::vector< CCopasiParameter * > &value) |
virtual | ~CCopasiParameter () |
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virtual bool | add (CCopasiObject *pObject, const bool &adopt=true) |
CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | |
CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | |
virtual std::string | getChildObjectUnits (const CCopasiObject *pObject) const |
virtual const objectMap & | getObjects () const |
virtual std::string | getUnits () const |
virtual const CCopasiObject * | getValueObject () const |
virtual bool | remove (CCopasiObject *pObject) |
virtual | ~CCopasiContainer () |
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void | addDirectDependency (const CCopasiObject *pObject) |
CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | |
void | clearDirectDependencies () |
void | clearRefresh () |
bool | dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const |
void | getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const |
virtual const DataObjectSet & | getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const |
CCopasiContainer * | getObjectAncestor (const std::string &type) const |
CCopasiDataModel * | getObjectDataModel () |
const CCopasiDataModel * | getObjectDataModel () const |
const std::string & | getObjectName () const |
CCopasiContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const |
virtual Refresh * | getRefresh () const |
UpdateMethod * | getUpdateMethod () const |
bool | hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const |
bool | hasUpdateMethod () const |
bool | isArray () const |
bool | isContainer () const |
bool | isDataModel () const |
bool | isMatrix () const |
bool | isNameVector () const |
bool | isNonUniqueName () const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const |
bool | isReference () const |
bool | isRoot () const |
bool | isSeparator () const |
bool | isStaticString () const |
bool | isValueBool () const |
bool | isValueDbl () const |
bool | isValueInt () const |
bool | isValueInt64 () const |
bool | isValueString () const |
bool | isVector () const |
virtual bool | mustBeDeleted (const DataObjectSet &deletedObjects) const |
void | removeDirectDependency (const CCopasiObject *pObject) |
void | setDirectDependencies (const DataObjectSet &directDependencies) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CCopasiContainer *pParent) |
void | setObjectValue (const C_FLOAT64 &value) |
void | setObjectValue (const C_INT32 &value) |
void | setObjectValue (const bool &value) |
template<class CType > | |
void | setRefresh (CType *pType, void(CType::*method)(void)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const bool &)) |
virtual | ~CCopasiObject () |
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CObjectInterface () | |
virtual | ~CObjectInterface () |
Additional Inherited Members | |
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typedef parameterGroup::iterator | index_iterator |
typedef CCopasiContainer::objectMap::iterator | name_iterator |
typedef std::vector < CCopasiParameter * > | parameterGroup |
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enum | Type { DOUBLE = 0, UDOUBLE, INT, UINT, BOOL, GROUP, STRING, CN, KEY, FILE, EXPRESSION, INVALID } |
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typedef std::multimap < std::string, CCopasiObject * > | objectMap |
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typedef std::set< const CCopasiObject * > | DataObjectSet |
typedef std::vector< Refresh * > | DataUpdateSequence |
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typedef std::set< const CObjectInterface * > | ObjectSet |
typedef std::vector < CObjectInterface * > | UpdateSequence |
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static std::vector< Refresh * > | buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) |
static void | setRenameHandler (CRenameHandler *rh) |
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static const unsigned int | ValidSubtasks [] |
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static const std::string | TypeName [] |
static const char * | XMLType [] |
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static const std::vector < CCopasiContainer * > | EmptyList |
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enum | Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 } |
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CCopasiProblem (const CCopasiTask::Type &type, const CCopasiContainer *pParent=NULL) | |
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CCopasiParameterGroup () | |
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template<class CType > | |
CCopasiObject * | addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
void | initObjects () |
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CCopasiObject () | |
CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | |
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C_FLOAT64 | mCalculateValue |
unsigned C_INT32 | mConstraintCounter |
unsigned C_INT32 | mCounter |
CCopasiTimer | mCPUTime |
unsigned C_INT32 | mFailedConstraintCounter |
unsigned C_INT32 | mFailedCounter |
CVector< C_FLOAT64 > | mGradient |
bool | mHaveStatistics |
size_t | mhCounter |
size_t | mhSolutionValue |
std::vector< Refresh * > | mInitialRefreshMethods |
CVector< C_FLOAT64 > | mOriginalVariables |
std::vector< COptItem * > * | mpConstraintItems |
CCopasiParameterGroup * | mpGrpConstraints |
CCopasiParameterGroup * | mpGrpItems |
CExpression * | mpObjectiveExpression |
std::vector< COptItem * > * | mpOptItems |
bool * | mpParmCalculateStatistics |
bool * | mpParmMaximize |
std::string * | mpParmObjectiveExpression |
bool * | mpParmRandomizeStartValues |
std::string * | mpParmSubtaskCN |
CCopasiTask * | mpSubtask |
std::vector< Refresh * > | mRefreshConstraints |
std::vector< Refresh * > | mRefreshMethods |
C_FLOAT64 | mSolutionValue |
CVector< C_FLOAT64 > | mSolutionVariables |
bool | mStoreResults |
std::vector< UpdateMethod * > | mUpdateMethods |
C_FLOAT64 | mWorstValue |
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CProcessReport * | mpCallBack |
CModel * | mpModel |
CReport * | mpReport |
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std::string | mKey |
CCopasiObject * | mpValueReference |
size_t | mSize |
Value | mValue |
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objectMap | mObjects |
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static CRenameHandler * | smpRenameHandler = NULL |
File name: CRealProblem.h
Programmer: Yongqun He Contact email: yohe@ Purpose: This is the header file of the vt.e duCRealProblem class. It specifies the optimization problem with its own members and functions. It's used by COptAlgorithm class and COptimization class It's a subclass of COptProblem
The specific purpose here is to use it to demonstrate that the system works fine. It is for my independent study project. – Yongqun He
The function I use here is a N-Dimensional Test Function: f(x) = (1/2)Sum(j=1, n)(Xj^4 - 16Xj^2 + 5Xj) where, x = [X1, X2, ... , Xj, ..., Xn] Number of global minima = 1; Global minimum found by TRUST is: [-2.90354, -2.90354, ..., -2.90354].
Definition at line 49 of file CRealProblem.h.
CRealProblem::CRealProblem | ( | ) |
Default constructor
File name: CRealProblem.cpp
Programmer: Yongqun He Contact email: yohe@ functions. It's used by COptAlgorithm class and COptimization class vt.e du
Definition at line 32 of file CRealProblem.cpp.
CRealProblem::~CRealProblem | ( | ) |
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virtual |
calculate function for optimization
Reimplemented from COptProblem.
Definition at line 47 of file CRealProblem.cpp.
References max.
Referenced by CGA::evaluate().