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COPASI API
4.40.278
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#include <CRealProblem.h>
Public Member Functions | |
| virtual bool | calculate () |
| CRealProblem () | |
| ~CRealProblem () | |
Public Member Functions inherited from COptProblem | |
| COptItem & | addOptConstraint (const CCommonName &objectCN) |
| COptItem & | addOptItem (const CCommonName &objectCN) |
| C_FLOAT64 | adjustForIntervals (C_FLOAT64 *pValue, const C_FLOAT64 &min, const C_FLOAT64 &max) |
| bool | adjustStartValue (COptItem &optItem) |
| bool | adjustStartValuesForIntervals () |
| virtual bool | calculateStatistics (const C_FLOAT64 &factor=1.0e-003, const C_FLOAT64 &resolution=1.0e-009) |
| virtual void | calculateValue () override |
| virtual bool | checkFunctionalConstraints () |
| bool | checkIntervals () |
| virtual bool | checkParametricConstraints () |
| COptProblem (const COptProblem &src, const CDataContainer *pParent) | |
| COptProblem (const CTaskEnum::Task &type=CTaskEnum::Task::optimization, const CDataContainer *pParent=NO_PARENT) | |
| virtual bool | elevateChildren () override |
| C_FLOAT64 | evalMinimizeIntervals (const C_FLOAT64 &value) |
| const unsigned C_INT32 & | geFailedConstraintCounter () const |
| const bool & | getCalculateStatistics () const |
| const C_FLOAT64 & | getCalculateValue () const |
| const unsigned C_INT32 & | getConstraintEvaluations () const |
| const std::vector< COptItem * > & | getConstraintList () const |
| CVectorCore< C_FLOAT64 * > & | getContainerVariables (const bool &algorithmOrder=false) const |
| const sCounter & | getCounters () const |
| const C_FLOAT64 & | getExecutionTime () const |
| const unsigned C_INT32 & | getFailedEvaluationsExc () const |
| const unsigned C_INT32 & | getFailedEvaluationsNaN () const |
| const unsigned C_INT32 & | getFunctionEvaluations () const |
| const std::string | getObjectiveFunction () |
| COptItem & | getOptConstraint (const size_t &index) |
| size_t | getOptConstraintSize () const |
| COptItem & | getOptItem (const size_t &index) |
| const std::vector< COptItem * > & | getOptItemList (const bool &algorithmOrder=false) const |
| size_t | getOptItemSize () const |
| const bool & | getRandomizeStartValues () const |
| const C_FLOAT64 & | getSolutionValue () const |
| const CVector< C_FLOAT64 > & | getSolutionVariables (const bool &algorithmOrder=false) const |
| virtual CCopasiTask * | getSubTask () const override |
| CTaskEnum::Task | getSubtaskType () const |
| virtual void * | getValuePointer () const override |
| const CVector< C_FLOAT64 > & | getVariableGradients () const |
| size_t | getVariableSize () const |
| void | incrementCounters (const sCounter &increment) |
| virtual bool | initialize () override |
| virtual bool | initializeSubtaskBeforeOutput () |
| const bool & | maximize () const |
| virtual void | print (std::ostream *ostream) const override |
| virtual void | printResult (std::ostream *ostream) const override |
| void | randomizeStartValues () |
| void | rememberStartValues () |
| bool | removeOptConstraint (const size_t &index) |
| bool | removeOptItem (const size_t &index) |
| void | reset () |
| void | resetCounters () |
| virtual bool | restore (const bool &updateModel) override |
| void | setCalculateStatistics (const bool &calculate) |
| virtual bool | setCallBack (CProcessReportLevel callBack) override |
| void | setMaximize (const bool &maximize) |
| bool | setObjectiveFunction (const std::string &infix) |
| void | setParameters (const CVectorCore< C_FLOAT64 > ¶meters) |
| void | setRandomizeStartValues (const bool &randomize) |
| virtual bool | setSolution (const C_FLOAT64 &value, const CVector< C_FLOAT64 > &variables, const bool &algorithmOrder=false) |
| CCommonName | setSubtaskType (const CTaskEnum::Task &subtaskType) |
| bool | swapOptItem (const size_t &iFrom, const size_t &iTo) |
| virtual | ~COptProblem () |
Public Member Functions inherited from CCopasiProblem | |
| CCopasiProblem (const CCopasiProblem &src, const CDataContainer *pParent) | |
| virtual void | clearCallBack () |
| CCopasiProblem * | copy () const |
| const CProcessReportLevel & | getCallBack () const |
| CMathContainer * | getMathContainer () const |
| const CTaskEnum::Task & | getType () const |
| void | setMathContainer (CMathContainer *pContainer) |
| virtual bool | setModel (CModel *model) |
| virtual | ~CCopasiProblem () |
Public Member Functions inherited from CCopasiParameterGroup | |
| bool | addGroup (const std::string &name) |
| void | addParameter (CCopasiParameter *pParameter) |
| bool | addParameter (const CCopasiParameter ¶meter) |
| bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
| template<class CType > | |
| bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
| virtual bool | applyData (const CData &data, CUndoData::CChangeSet &changes) |
| CCopasiParameterGroup * | assertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
| template<class CType > | |
| CType * | assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All) |
| index_iterator | beginIndex () const |
| const_name_iterator | beginName () const |
| CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL) | |
| CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup") | |
| void | clear () |
| virtual void | createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const |
| index_iterator | endIndex () const |
| const_name_iterator | endName () const |
| CCopasiParameterGroup & | getElementTemplates () |
| const CCopasiParameterGroup & | getElementTemplates () const |
| CCopasiParameterGroup * | getGroup (const size_t &index) |
| const CCopasiParameterGroup * | getGroup (const size_t &index) const |
| CCopasiParameterGroup * | getGroup (const std::string &name) |
| const CCopasiParameterGroup * | getGroup (const std::string &name) const |
| virtual size_t | getIndex (const CDataObject *pObject) const |
| size_t | getIndex (const std::string &name) const |
| std::string | getKey (const size_t &index) const |
| std::string | getKey (const std::string &name) const |
| virtual const std::string & | getName (const size_t &index) const |
| virtual const CObjectInterface * | getObject (const CCommonName &cn) const |
| CCopasiParameter * | getParameter (const size_t &index) |
| const CCopasiParameter * | getParameter (const size_t &index) const |
| CCopasiParameter * | getParameter (std::string name) |
| const CCopasiParameter * | getParameter (std::string name) const |
| CCopasiParameter::Type | getType (const size_t &index) const |
| CCopasiParameter::Type | getType (const std::string &name) const |
| std::string | getUniqueParameterName (const CCopasiParameter *pParameter) const |
| template<class CType > | |
| CType & | getValue (const size_t &index) |
| template<class CType > | |
| const CType & | getValue (const size_t &index) const |
| template<class CType > | |
| CType & | getValue (const std::string &name) |
| template<class CType > | |
| const CType & | getValue (const std::string &name) const |
| bool | haveTemplate () const |
| virtual CUndoObjectInterface * | insert (const CData &data) |
| CCopasiParameterGroup & | operator= (const CCopasiParameterGroup &rhs) |
| virtual bool | remove (CDataObject *pObject) |
| bool | removeParameter (CCopasiParameter *pParameter) |
| bool | removeParameter (const size_t &index) |
| bool | removeParameter (const std::string &name) |
| virtual void | setUserInterfaceFlag (const UserInterfaceFlag &flag) |
| template<class CType > | |
| bool | setValue (const size_t &index, const CType &value) |
| template<class CType > | |
| bool | setValue (const std::string &name, const CType &value) |
| size_t | size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const |
| bool | swap (const size_t &iFrom, const size_t &iTo) |
| bool | swap (index_iterator &from, index_iterator &to) |
| virtual CData | toData () const |
| virtual void | updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject) |
| virtual | ~CCopasiParameterGroup () |
Public Member Functions inherited from CCopasiParameter | |
| CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent) | |
| CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter") | |
| virtual CCommonName | getCN () const override |
| template<class CType > | |
| const CType & | getDefault () const |
| virtual const std::string & | getKey () const override |
| virtual std::string | getObjectDisplayName () const override |
| const CCopasiParameter::Type & | getType () const |
| const UserInterfaceFlag & | getUserInterfaceFlag () const |
| template<class CType > | |
| std::vector< std::pair< CType, CType > > & | getValidValues () |
| template<class CType > | |
| const std::vector< std::pair< CType, CType > > & | getValidValues () const |
| void * | getValidValuesPointer () const |
| template<class CType > | |
| CType & | getValue () |
| template<class CType > | |
| const CType & | getValue () const |
| CDataObject * | getValueReference () const |
| bool | hasValidValues () const |
| bool | isBasic () const |
| bool | isDefault () const |
| bool | isEditable () const |
| bool | isUnsupported () const |
| bool | isValidValue (const bool &value) const |
| bool | isValidValue (const C_FLOAT64 &value) const |
| bool | isValidValue (const C_INT32 &value) const |
| bool | isValidValue (const CCommonName &value) const |
| template<class CType > | |
| bool | isValidValue (const CType &) const |
| bool | isValidValue (const std::string &value) const |
| bool | isValidValue (const std::vector< CCopasiParameter * > &value) const |
| bool | isValidValue (const unsigned C_INT32 &value) const |
| CCopasiParameter & | operator= (const CCopasiParameter &rhs) |
| template<class CType > | |
| bool | setDefault (const CType &defaultValue) |
| bool | setDefault (const std::vector< CCopasiParameter * > &defaultValue) |
| virtual bool | setObjectParent (const CDataContainer *pParent) override |
| template<class CType , class Enum > | |
| bool | setValidValues (const CEnumAnnotation< CType, Enum > &validValues) |
| template<class CType > | |
| bool | setValidValues (const std::vector< std::pair< CType, CType > > &validValues) |
| template<class CType > | |
| bool | setValue (const CType &value) |
| bool | setValue (const std::vector< CCopasiParameter * > &value) |
| virtual | ~CCopasiParameter () |
Public Member Functions inherited from CDataContainer | |
| virtual bool | add (CDataObject *pObject, const bool &adopt=true) |
| virtual bool | appendDeletedDependentData (CUndoData &undoData) const |
| CDataContainer (const CDataContainer &src, const CDataContainer *pParent) | |
| CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None) | |
| virtual std::string | getChildObjectUnits (const CDataObject *pObject) const |
| void | getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const |
| virtual objectMap & | getObjects () |
| virtual const objectMap & | getObjects () const |
| virtual const std::string | getUnits () const override |
| virtual const CDataObject * | getValueObject () const override |
| void | objectRenamed (CDataObject *pObject, const std::string &oldName) |
| virtual | ~CDataContainer () |
Public Member Functions inherited from CDataObject | |
| void | addIssue (const CIssue &issue) |
| void | addReference (const CDataContainer *pReference) |
| CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL) | |
| virtual void | destruct () override |
| virtual const CDataObject * | getDataObject () const override |
| CDataContainer * | getObjectAncestor (const std::string &type) const |
| CDataModel * | getObjectDataModel () const |
| const CObjectInterface * | getObjectFromCN (const CCommonName &cn) const |
| const std::string & | getObjectName () const |
| CDataContainer * | getObjectParent () const |
| const std::string & | getObjectType () const |
| virtual const CObjectInterface::ObjectSet & | getPrerequisites () const override |
| virtual const CValidity & | getValidity () const override |
| bool | hasFlag (const Flag &flag) const |
| virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override |
| bool | prerequisitsContains (const DataObjectSet &objects) const |
| void | removeIssue (const CIssue &issue) |
| void | removeReference (const CDataContainer *pReference) |
| bool | setObjectName (const std::string &name) |
| void | validityChanged (const CValidity &changedValidity) override |
| void | validityRemoved (const CValidity &changedValidity) |
| virtual | ~CDataObject () |
Public Member Functions inherited from CObjectInterface | |
| CObjectInterface () | |
| CObjectInterface (const CObjectInterface &src) | |
| virtual | ~CObjectInterface () |
Public Member Functions inherited from CUndoObjectInterface | |
| CUndoObjectInterface () | |
| CUndoObjectInterface (const CUndoObjectInterface &src) | |
| bool | generateUuid () |
| const xg::Guid & | getUuid () const |
| bool | setUuid (const std::string &uuid) |
| bool | setUuid (const xg::Guid &uuid) |
| virtual | ~CUndoObjectInterface () |
File name: CRealProblem.h
Programmer: Yongqun He Contact email: yohe@vt.edu Purpose: This is the header file of the CRealProblem class. It specifies the optimization problem with its own members and functions. It's used by COptAlgorithm class and COptimization class It's a subclass of COptProblem
The specific purpose here is to use it to demonstrate that the system works fine. It is for my independent study project. – Yongqun He
The function I use here is a N-Dimensional Test Function: f(x) = (1/2)Sum(j=1, n)(Xj^4 - 16Xj^2 + 5Xj) where, x = [X1, X2, ... , Xj, ..., Xn] Number of global minima = 1; Global minimum found by TRUST is: [-2.90354, -2.90354, ..., -2.90354].
| CRealProblem::CRealProblem | ( | ) |
Default constructor
File name: CRealProblem.cpp
Programmer: Yongqun He Contact email: yohe@vt.edu functions. It's used by COptAlgorithm class and COptimization class
| CRealProblem::~CRealProblem | ( | ) |
Destructor
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virtual |
calculate function for optimization
Reimplemented from COptProblem.