#include <CTimeSensProblem.h>

Inheritance diagram for CTimeSensProblem:

Public Member Functions
void	addParameterCN (const CCommonName &cn)

void	addTargetCN (const CCommonName &cn)

void	clearParameterCNs ()

void	clearTargetCNs ()

	CTimeSensProblem (const CDataContainer *pParent=NO_PARENT)

	CTimeSensProblem (const CTimeSensProblem &src, const CDataContainer *pParent)

virtual bool	elevateChildren ()

size_t	getNumParameters ()

size_t	getNumTargets ()

CCommonName	getParameterCN (size_t index)

CArray &	getScaledStateResult ()

const CArray &	getScaledStateResult () const

CDataArray *	getScaledStateResultAnnotated ()

const CDataArray *	getScaledStateResultAnnotated () const

CArray &	getScaledTargetsResult ()

const CArray &	getScaledTargetsResult () const

CDataArray *	getScaledTargetsResultAnnotated ()

const CDataArray *	getScaledTargetsResultAnnotated () const

CArray &	getStateResult ()

const CArray &	getStateResult () const

CDataArray *	getStateResultAnnotated ()

const CDataArray *	getStateResultAnnotated () const

CCommonName	getTargetCN (size_t index)

CArray &	getTargetsResult ()

const CArray &	getTargetsResult () const

CDataArray *	getTargetsResultAnnotated ()

const CDataArray *	getTargetsResultAnnotated () const

void	removeParameterCN (const CCommonName &cn)

void	removeParameterCN (size_t index)

void	removeTargetCN (const CCommonName &cn)

void	removeTargetCN (size_t index)

	~CTimeSensProblem ()

Public Member Functions inherited from CTrajectoryProblem
	CTrajectoryProblem (const CDataContainer *pParent=NO_PARENT)

	CTrajectoryProblem (const CTrajectoryProblem &src, const CDataContainer *pParent)

bool	getAutomaticStepSize () const

const C_FLOAT64 &	getDuration () const

const bool &	getOutputEvent () const

const C_FLOAT64 &	getOutputStartTime () const

bool	getStartInSteadyState () const

const unsigned C_INT32 &	getStepNumber () const

const C_FLOAT64 &	getStepSize () const

bool	getUseValues () const

std::set< C_FLOAT64 >	getValues () const

const std::string &	getValueString () const

void	load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::NEXT)

virtual void	printResult (std::ostream *ostream) const

void	setAutomaticStepSize (const bool &automaticStepSize)

void	setDuration (const C_FLOAT64 &duration)

void	setOutputEvent (const bool &outputEvent)

void	setOutputStartTime (const C_FLOAT64 &endTime)

void	setStartInSteadyState (bool flag)

void	setStepNumber (const unsigned C_INT32 &stepNumber)

void	setStepSize (const C_FLOAT64 &stepSize)

void	setTimeSeriesRequested (bool flag)

void	setUseValues (bool flag)

void	setValues (const std::string &values)

void	setValues (const std::vector< C_FLOAT64 > &values)

bool	timeSeriesRequested () const

	~CTrajectoryProblem ()

Public Member Functions inherited from CCopasiProblem
	CCopasiProblem (const CCopasiProblem &src, const CDataContainer *pParent)

virtual void	clearCallBack ()

CCopasiProblem *	copy () const

const CProcessReportLevel &	getCallBack () const

CMathContainer *	getMathContainer () const

virtual CCopasiTask *	getSubTask () const

const CTaskEnum::Task &	getType () const

virtual bool	initialize ()

virtual void	print (std::ostream *ostream) const

virtual bool	restore (const bool &updateModel)

virtual bool	setCallBack (CProcessReportLevel callBack)

void	setMathContainer (CMathContainer *pContainer)

virtual bool	setModel (CModel *model)

virtual	~CCopasiProblem ()

Public Member Functions inherited from CCopasiParameterGroup
bool	addGroup (const std::string &name)

void	addParameter (CCopasiParameter *pParameter)

bool	addParameter (const CCopasiParameter &parameter)

bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
bool	addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

virtual bool	applyData (const CData &data, CUndoData::CChangeSet &changes)

CCopasiParameterGroup *	assertGroup (const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

template<class CType >
CType *	assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)

index_iterator	beginIndex () const

const_name_iterator	beginName () const

	CCopasiParameterGroup (const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)

	CCopasiParameterGroup (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")

void	clear ()

virtual void	createUndoData (CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) const

index_iterator	endIndex () const

const_name_iterator	endName () const

CCopasiParameterGroup &	getElementTemplates ()

const CCopasiParameterGroup &	getElementTemplates () const

CCopasiParameterGroup *	getGroup (const size_t &index)

const CCopasiParameterGroup *	getGroup (const size_t &index) const

CCopasiParameterGroup *	getGroup (const std::string &name)

const CCopasiParameterGroup *	getGroup (const std::string &name) const

virtual size_t	getIndex (const CDataObject *pObject) const

size_t	getIndex (const std::string &name) const

std::string	getKey (const size_t &index) const

std::string	getKey (const std::string &name) const

virtual const std::string &	getName (const size_t &index) const

virtual const CObjectInterface *	getObject (const CCommonName &cn) const

CCopasiParameter *	getParameter (const size_t &index)

const CCopasiParameter *	getParameter (const size_t &index) const

CCopasiParameter *	getParameter (std::string name)

const CCopasiParameter *	getParameter (std::string name) const

CCopasiParameter::Type	getType (const size_t &index) const

CCopasiParameter::Type	getType (const std::string &name) const

std::string	getUniqueParameterName (const CCopasiParameter *pParameter) const

template<class CType >
CType &	getValue (const size_t &index)

template<class CType >
const CType &	getValue (const size_t &index) const

template<class CType >
CType &	getValue (const std::string &name)

template<class CType >
const CType &	getValue (const std::string &name) const

bool	haveTemplate () const

virtual CUndoObjectInterface *	insert (const CData &data)

CCopasiParameterGroup &	operator= (const CCopasiParameterGroup &rhs)

virtual bool	remove (CDataObject *pObject)

bool	removeParameter (CCopasiParameter *pParameter)

bool	removeParameter (const size_t &index)

bool	removeParameter (const std::string &name)

virtual void	setUserInterfaceFlag (const UserInterfaceFlag &flag)

template<class CType >
bool	setValue (const size_t &index, const CType &value)

template<class CType >
bool	setValue (const std::string &name, const CType &value)

size_t	size (const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) const

bool	swap (const size_t &iFrom, const size_t &iTo)

bool	swap (index_iterator &from, index_iterator &to)

virtual CData	toData () const

virtual void	updateIndex (const size_t &index, const CUndoObjectInterface *pUndoObject)

virtual	~CCopasiParameterGroup ()

Public Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src, const CDataContainer *pParent)

	CCopasiParameter (const std::string &name, const Type &type, const void pValue=NULL, const CDataContainer pParent=NO_PARENT, const std::string &objectType="Parameter")

virtual CCommonName	getCN () const override

template<class CType >
const CType &	getDefault () const

virtual const std::string &	getKey () const override

virtual std::string	getObjectDisplayName () const override

const CCopasiParameter::Type &	getType () const

const UserInterfaceFlag &	getUserInterfaceFlag () const

template<class CType >
std::vector< std::pair< CType, CType > > &	getValidValues ()

template<class CType >
const std::vector< std::pair< CType, CType > > &	getValidValues () const

void *	getValidValuesPointer () const

template<class CType >
CType &	getValue ()

template<class CType >
const CType &	getValue () const

virtual void *	getValuePointer () const override

CDataObject *	getValueReference () const

bool	hasValidValues () const

bool	isBasic () const

bool	isDefault () const

bool	isEditable () const

bool	isUnsupported () const

bool	isValidValue (const bool &value) const

bool	isValidValue (const C_FLOAT64 &value) const

bool	isValidValue (const C_INT32 &value) const

bool	isValidValue (const CCommonName &value) const

template<class CType >
bool	isValidValue (const CType &) const

bool	isValidValue (const std::string &value) const

bool	isValidValue (const std::vector< CCopasiParameter * > &value) const

bool	isValidValue (const unsigned C_INT32 &value) const

CCopasiParameter &	operator= (const CCopasiParameter &rhs)

template<class CType >
bool	setDefault (const CType &defaultValue)

bool	setDefault (const std::vector< CCopasiParameter * > &defaultValue)

virtual bool	setObjectParent (const CDataContainer *pParent) override

template<class CType , class Enum >
bool	setValidValues (const CEnumAnnotation< CType, Enum > &validValues)

template<class CType >
bool	setValidValues (const std::vector< std::pair< CType, CType > > &validValues)

template<class CType >
bool	setValue (const CType &value)

bool	setValue (const std::vector< CCopasiParameter * > &value)

virtual	~CCopasiParameter ()

Public Member Functions inherited from CDataContainer
virtual bool	add (CDataObject *pObject, const bool &adopt=true)

virtual bool	appendDeletedDependentData (CUndoData &undoData) const

	CDataContainer (const CDataContainer &src, const CDataContainer *pParent)

	CDataContainer (const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

virtual std::string	getChildObjectUnits (const CDataObject *pObject) const

void	getDescendants (CDataObject::DataObjectSet &descendants, const bool &recursive=false) const

virtual objectMap &	getObjects ()

virtual const objectMap &	getObjects () const

virtual const std::string	getUnits () const override

virtual const CDataObject *	getValueObject () const override

void	objectRenamed (CDataObject *pObject, const std::string &oldName)

virtual	~CDataContainer ()

Public Member Functions inherited from CDataObject
void	addIssue (const CIssue &issue)

void	addReference (const CDataContainer *pReference)

virtual void	calculateValue () override

	CDataObject (const CDataObject &src, const CDataContainer *pParent=NULL)

virtual void	destruct () override

virtual const CDataObject *	getDataObject () const override

CDataContainer *	getObjectAncestor (const std::string &type) const

CDataModel *	getObjectDataModel () const

const CObjectInterface *	getObjectFromCN (const CCommonName &cn) const

const std::string &	getObjectName () const

CDataContainer *	getObjectParent () const

const std::string &	getObjectType () const

virtual const CObjectInterface::ObjectSet &	getPrerequisites () const override

virtual const CValidity &	getValidity () const override

bool	hasFlag (const Flag &flag) const

virtual bool	isPrerequisiteForContext (const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const override

bool	prerequisitsContains (const DataObjectSet &objects) const

void	removeIssue (const CIssue &issue)

void	removeReference (const CDataContainer *pReference)

bool	setObjectName (const std::string &name)

void	validityChanged (const CValidity &changedValidity) override

void	validityRemoved (const CValidity &changedValidity)

virtual	~CDataObject ()

Public Member Functions inherited from CObjectInterface
	CObjectInterface ()

	CObjectInterface (const CObjectInterface &src)

virtual	~CObjectInterface ()

Public Member Functions inherited from CUndoObjectInterface
	CUndoObjectInterface ()

	CUndoObjectInterface (const CUndoObjectInterface &src)

bool	generateUuid ()

const xg::Guid &	getUuid () const

bool	setUuid (const std::string &uuid)

bool	setUuid (const xg::Guid &uuid)

virtual	~CUndoObjectInterface ()

Protected Member Functions
	CTimeSensProblem (const CTimeSensProblem &src)

Protected Member Functions inherited from CTrajectoryProblem
	CTrajectoryProblem (const CTaskEnum::Task &type, const CDataContainer *pParent)

	CTrajectoryProblem (const CTrajectoryProblem &src)

Protected Member Functions inherited from CCopasiProblem
	CCopasiProblem (const CCopasiProblem &src)

	CCopasiProblem (const CTaskEnum::Task &type, const CDataContainer *pParent)

virtual void	signalMathContainerChanged ()

Protected Member Functions inherited from CCopasiParameterGroup
	CCopasiParameterGroup ()

Protected Member Functions inherited from CCopasiParameter
	CCopasiParameter (const CCopasiParameter &src)

Protected Member Functions inherited from CDataContainer
template<class CType >
CDataMatrixReference< CType > *	addMatrixReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataObjectReference< CType > *	addObjectReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

template<class CType >
CDataVectorReference< CType > *	addVectorReference (const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)

	CDataContainer (const CDataContainer &src)

void	initObjects ()

Protected Member Functions inherited from CDataObject
	CDataObject ()

	CDataObject (const std::string &name, const CDataContainer pParent=static_cast< CDataContainer >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)

Protected Attributes
CCopasiParameterGroup *	mpParametersGroup

CDataArray *	mpScaledStateResultAnnotation

CDataArray *	mpScaledTargetsResultAnnotation

CDataArray *	mpStateResultAnnotation

CCopasiParameterGroup *	mpTargetsGroup

CDataArray *	mpTargetsResultAnnotation

CArray	mScaledStateResult

CArray	mScaledTargetsResult

CArray	mStateResult

CArray	mTargetsResult

Protected Attributes inherited from CTrajectoryProblem
bool *	mpAutomaticStepSize

C_FLOAT64 *	mpDuration

bool *	mpOutputEvent

C_FLOAT64 *	mpOutputStartTime

bool *	mpStartInSteadyState

unsigned C_INT32 *	mpStepNumber

C_FLOAT64 *	mpStepSize

bool *	mpTimeSeriesRequested

bool *	mpUseValues

std::string *	mpValueString

bool	mStepNumberSetLast

Protected Attributes inherited from CCopasiProblem
CMathContainer *	mpContainer

CReport *	mpReport

CProcessReportLevel	mProcessReport

Protected Attributes inherited from CCopasiParameter
std::string	mKey

void *	mpDefault

void *	mpValidValues

void *	mpValue

CDataObject *	mpValueReference

UserInterfaceFlag	mUserInterfaceFlag

Protected Attributes inherited from CDataContainer
objectMap	mObjects

Protected Attributes inherited from CDataObject
ObjectSet	mPrerequisits

std::set< CDataContainer * >	mReferences

Protected Attributes inherited from CObjectInterface
CValidity	mValidity

Private Member Functions
void	initializeParameter ()

void	initObjects ()

Additional Inherited Members
Public Types inherited from CCopasiParameterGroup
typedef CDataObjectMap::const_type_iterator< CCopasiParameter >	const_name_iterator

typedef std::vector< CCopasiParameter * >	elements

typedef elements::iterator	index_iterator

typedef CDataObjectMap::type_iterator< CCopasiParameter >	name_iterator

Public Types inherited from CCopasiParameter
enum class	eUserInterfaceFlag { editable , basic , unsupported , __SIZE }

enum class	Type { DOUBLE = 0 , UDOUBLE , INT , UINT , BOOL , GROUP , STRING , CN , KEY , FILE , EXPRESSION , INVALID , __SIZE }

typedef CFlags< eUserInterfaceFlag >	UserInterfaceFlag

Public Types inherited from CDataContainer
typedef CDataObjectMap	objectMap

Public Types inherited from CDataObject
typedef std::set< const CDataObject * >	DataObjectSet

enum	Flag { Container , Vector , Matrix , NameVector , Reference , ValueBool , ValueInt , ValueInt64 , ValueDbl , NonUniqueName , StaticString , ValueString , Separator , DisplayName , ModelEntity , Array , DataModel , Root , Gui , __SIZE }

Public Types inherited from CObjectInterface
typedef std::vector< const CDataContainer * >	ContainerList

typedef std::set< const CObjectInterface * >	ObjectSet

Static Public Member Functions inherited from CCopasiParameter
static void	allocateValidValues (const Type &type, void *&pValidValues)

static void	allocateValue (const Type &type, void *&pValue)

static void	assignValue (const Type &type, void &pValue, const void pNewValue)

static void	deleteValidValues (const Type &type, void *&pValidValues)

static void	deleteValue (const Type &type, void *&pValue)

static CCopasiParameter *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataContainer
static CDataContainer *	fromData (const CData &data, CUndoObjectInterface *pParent)

Static Public Member Functions inherited from CDataObject
static CDataObject *	fromData (const CData &data, CUndoObjectInterface *pParent)

static void	sanitizeObjectName (std::string &name)

Static Public Member Functions inherited from CObjectInterface
static const CDataObject *	DataObject (const CObjectInterface *pInterface)

static CObjectInterface *	GetObjectFromCN (const ContainerList &listOfContainer, const CCommonName &objName)

Static Public Member Functions inherited from CUndoObjectInterface
template<class CType >
static CType *	fromData (const CData &, CUndoObjectInterface *)

Static Public Attributes inherited from CCopasiParameter
static const CEnumAnnotation< std::string, Type >	TypeName

static const CEnumAnnotation< std::string, Type >	XMLType

Static Public Attributes inherited from CDataContainer
static const CObjectInterface::ContainerList	EmptyList

Detailed Description

CTimeSensProblem class. This class describes the time sensitivities problem, i.e., it allows to specify for example initial conditions and number of steps.

Constructor & Destructor Documentation

◆ CTimeSensProblem() [1/3]

CTimeSensProblem::CTimeSensProblem ( const CTimeSensProblem & src )

protected

◆ CTimeSensProblem() [2/3]

CTimeSensProblem::CTimeSensProblem ( const CDataContainer * pParent = NO_PARENT )

Default constructor.

Parameters

const CDataContainer * pParent (default: NULL)

CTimeSensProblem class. This class describes the time sensitivities problem, i.e., it allows to specify for example initial conditions and number of steps. Default constructor.

References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().

◆ CTimeSensProblem() [3/3]

CTimeSensProblem::CTimeSensProblem	(	const CTimeSensProblem &	src,
		const CDataContainer *	pParent
	)

Copy constructor.

Parameters

const CTimeSensProblem & src @paramconst CDataContainer * pParent (default: NULL)

Copy constructor.

Parameters

const CTimeSensProblem & src

References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().

◆ ~CTimeSensProblem()

CTimeSensProblem::~CTimeSensProblem ( )

Destructor.

References DESTRUCTOR_TRACE.

Member Function Documentation

◆ addParameterCN()

void CTimeSensProblem::addParameterCN ( const CCommonName & cn )

References CCopasiParameterGroup::addParameter(), CCopasiParameter::CN, and mpParametersGroup.

Referenced by CFitProblem::initialize().

◆ addTargetCN()

void CTimeSensProblem::addTargetCN ( const CCommonName & cn )

References CCopasiParameterGroup::addParameter(), CCopasiParameter::CN, and mpTargetsGroup.

Referenced by CFitProblem::initialize().

◆ clearParameterCNs()

void CTimeSensProblem::clearParameterCNs ( )

References CCopasiParameterGroup::clear(), and mpParametersGroup.

Referenced by CFitProblem::initialize().

◆ clearTargetCNs()

void CTimeSensProblem::clearTargetCNs ( )

References CCopasiParameterGroup::clear(), and mpTargetsGroup.

Referenced by CFitProblem::initialize().

◆ elevateChildren()

bool CTimeSensProblem::elevateChildren ( )

virtual

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns: bool success

Reimplemented from CTrajectoryProblem.

References CTrajectoryProblem::elevateChildren().

◆ getNumParameters()

size_t CTimeSensProblem::getNumParameters ( )

References mpParametersGroup, and CCopasiParameterGroup::size().

Referenced by getParameterCN(), CTimeSensMethod::initResult(), and removeParameterCN().

◆ getNumTargets()

size_t CTimeSensProblem::getNumTargets ( )

References mpTargetsGroup, and CCopasiParameterGroup::size().

Referenced by CTimeSensLsodaMethod::copySensitivitiesToResultMatrix(), getTargetCN(), CTimeSensMethod::initResult(), and removeTargetCN().

◆ getParameterCN()

CCommonName CTimeSensProblem::getParameterCN ( size_t index )

References getNumParameters(), CCopasiParameterGroup::getParameter(), CCopasiParameter::getValue(), and mpParametersGroup.

Referenced by CTimeSensMethod::initializeDerivativesCalculations(), CTimeSensMethod::initResult(), and removeParameterCN().

◆ getScaledStateResult() [1/2]

CArray & CTimeSensProblem::getScaledStateResult ( )

References mScaledStateResult.

Referenced by CTimeSensLsodaMethod::copySensitivitiesToResultMatrix(), and CTimeSensMethod::initResult().

◆ getScaledStateResult() [2/2]

const CArray & CTimeSensProblem::getScaledStateResult ( ) const

References mScaledStateResult.

◆ getScaledStateResultAnnotated() [1/2]

CDataArray * CTimeSensProblem::getScaledStateResultAnnotated ( )

References mpScaledStateResultAnnotation.

Referenced by CTimeSensMethod::initResult().

◆ getScaledStateResultAnnotated() [2/2]

const CDataArray * CTimeSensProblem::getScaledStateResultAnnotated ( ) const

References mpScaledStateResultAnnotation.

◆ getScaledTargetsResult() [1/2]

CArray & CTimeSensProblem::getScaledTargetsResult ( )

References mScaledTargetsResult.

Referenced by CTimeSensLsodaMethod::copySensitivitiesToResultMatrix(), and CTimeSensMethod::initResult().

◆ getScaledTargetsResult() [2/2]

const CArray & CTimeSensProblem::getScaledTargetsResult ( ) const

References mScaledTargetsResult.

◆ getScaledTargetsResultAnnotated() [1/2]

CDataArray * CTimeSensProblem::getScaledTargetsResultAnnotated ( )

References mpScaledTargetsResultAnnotation.

Referenced by CTimeSensMethod::initResult().

◆ getScaledTargetsResultAnnotated() [2/2]

const CDataArray * CTimeSensProblem::getScaledTargetsResultAnnotated ( ) const

References mpScaledTargetsResultAnnotation.

◆ getStateResult() [1/2]

CArray & CTimeSensProblem::getStateResult ( )

References mStateResult.

Referenced by CTimeSensLsodaMethod::copySensitivitiesToResultMatrix(), and CTimeSensMethod::initResult().

◆ getStateResult() [2/2]

const CArray & CTimeSensProblem::getStateResult ( ) const

References mStateResult.

◆ getStateResultAnnotated() [1/2]

CDataArray * CTimeSensProblem::getStateResultAnnotated ( )

References mpStateResultAnnotation.

Referenced by CTimeSensMethod::initResult().

◆ getStateResultAnnotated() [2/2]

const CDataArray * CTimeSensProblem::getStateResultAnnotated ( ) const

References mpStateResultAnnotation.

◆ getTargetCN()

CCommonName CTimeSensProblem::getTargetCN ( size_t index )

References getNumTargets(), CCopasiParameterGroup::getParameter(), CCopasiParameter::getValue(), and mpTargetsGroup.

Referenced by CTimeSensMethod::initializeDerivativesCalculations(), CTimeSensMethod::initResult(), and removeTargetCN().

◆ getTargetsResult() [1/2]

CArray & CTimeSensProblem::getTargetsResult ( )

References mTargetsResult.

Referenced by CTimeSensLsodaMethod::copySensitivitiesToResultMatrix(), and CTimeSensMethod::initResult().

◆ getTargetsResult() [2/2]

const CArray & CTimeSensProblem::getTargetsResult ( ) const

References mTargetsResult.

◆ getTargetsResultAnnotated() [1/2]

CDataArray * CTimeSensProblem::getTargetsResultAnnotated ( )

References mpTargetsResultAnnotation.

Referenced by CFitProblem::calculate(), and CTimeSensMethod::initResult().

◆ getTargetsResultAnnotated() [2/2]

const CDataArray * CTimeSensProblem::getTargetsResultAnnotated ( ) const

References mpTargetsResultAnnotation.

◆ initializeParameter()

void CTimeSensProblem::initializeParameter ( )

private

Initialize the method parameter

References CCopasiParameterGroup::assertGroup(), mpParametersGroup, and mpTargetsGroup.

Referenced by CTimeSensProblem().

◆ initObjects()

void CTimeSensProblem::initObjects ( )

private

References mpScaledStateResultAnnotation, mpScaledTargetsResultAnnotation, mpStateResultAnnotation, mpTargetsResultAnnotation, mScaledStateResult, mScaledTargetsResult, mStateResult, mTargetsResult, CDataArray::Objects, CDataArray::setDescription(), and CDataArray::setMode().

Referenced by CTimeSensProblem().

◆ removeParameterCN() [1/2]

void CTimeSensProblem::removeParameterCN ( const CCommonName & cn )

References getNumParameters(), CCopasiParameterGroup::getParameter(), getParameterCN(), CCopasiParameter::getValue(), mpParametersGroup, and CCopasiParameterGroup::removeParameter().

◆ removeParameterCN() [2/2]

void CTimeSensProblem::removeParameterCN ( size_t index )

References getNumParameters(), mpParametersGroup, and CCopasiParameterGroup::removeParameter().

◆ removeTargetCN() [1/2]

void CTimeSensProblem::removeTargetCN ( const CCommonName & cn )

References getNumTargets(), CCopasiParameterGroup::getParameter(), getTargetCN(), CCopasiParameter::getValue(), mpTargetsGroup, and CCopasiParameterGroup::removeParameter().

◆ removeTargetCN() [2/2]

void CTimeSensProblem::removeTargetCN ( size_t index )

References getNumTargets(), mpTargetsGroup, and CCopasiParameterGroup::removeParameter().

Member Data Documentation

◆ mpParametersGroup

CCopasiParameterGroup* CTimeSensProblem::mpParametersGroup

protected

Referenced by addParameterCN(), clearParameterCNs(), getNumParameters(), getParameterCN(), initializeParameter(), and removeParameterCN().

◆ mpScaledStateResultAnnotation

CDataArray* CTimeSensProblem::mpScaledStateResultAnnotation

protected

Referenced by getScaledStateResultAnnotated(), and initObjects().

◆ mpScaledTargetsResultAnnotation

CDataArray* CTimeSensProblem::mpScaledTargetsResultAnnotation

protected

Referenced by getScaledTargetsResultAnnotated(), and initObjects().

◆ mpStateResultAnnotation

CDataArray* CTimeSensProblem::mpStateResultAnnotation

protected

Referenced by getStateResultAnnotated(), and initObjects().

◆ mpTargetsGroup

CCopasiParameterGroup* CTimeSensProblem::mpTargetsGroup

protected

Referenced by addTargetCN(), clearTargetCNs(), getNumTargets(), getTargetCN(), initializeParameter(), and removeTargetCN().

◆ mpTargetsResultAnnotation

CDataArray* CTimeSensProblem::mpTargetsResultAnnotation

protected

Referenced by getTargetsResultAnnotated(), and initObjects().

◆ mScaledStateResult

CArray CTimeSensProblem::mScaledStateResult

protected

Referenced by getScaledStateResult(), and initObjects().

◆ mScaledTargetsResult

CArray CTimeSensProblem::mScaledTargetsResult

protected

Referenced by getScaledTargetsResult(), and initObjects().

◆ mStateResult

CArray CTimeSensProblem::mStateResult

protected

These hold the results

Referenced by getStateResult(), and initObjects().

◆ mTargetsResult

CArray CTimeSensProblem::mTargetsResult

protected

Referenced by getTargetsResult(), and initObjects().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CTimeSensProblem() [1/3]

◆ CTimeSensProblem() [2/3]

◆ CTimeSensProblem() [3/3]

◆ ~CTimeSensProblem()

Member Function Documentation

◆ addParameterCN()

◆ addTargetCN()

◆ clearParameterCNs()

◆ clearTargetCNs()

◆ elevateChildren()

◆ getNumParameters()

◆ getNumTargets()

◆ getParameterCN()

◆ getScaledStateResult() [1/2]

◆ getScaledStateResult() [2/2]

◆ getScaledStateResultAnnotated() [1/2]

◆ getScaledStateResultAnnotated() [2/2]

◆ getScaledTargetsResult() [1/2]

◆ getScaledTargetsResult() [2/2]

◆ getScaledTargetsResultAnnotated() [1/2]

◆ getScaledTargetsResultAnnotated() [2/2]

◆ getStateResult() [1/2]

◆ getStateResult() [2/2]

◆ getStateResultAnnotated() [1/2]

◆ getStateResultAnnotated() [2/2]

◆ getTargetCN()

◆ getTargetsResult() [1/2]

◆ getTargetsResult() [2/2]

◆ getTargetsResultAnnotated() [1/2]

◆ getTargetsResultAnnotated() [2/2]

◆ initializeParameter()

◆ initObjects()

◆ removeParameterCN() [1/2]

◆ removeParameterCN() [2/2]

◆ removeTargetCN() [1/2]

◆ removeTargetCN() [2/2]

Member Data Documentation

◆ mpParametersGroup

◆ mpScaledStateResultAnnotation

◆ mpScaledTargetsResultAnnotation

◆ mpStateResultAnnotation

◆ mpTargetsGroup

◆ mpTargetsResultAnnotation

◆ mScaledStateResult

◆ mScaledTargetsResult

◆ mStateResult

◆ mTargetsResult