Here is a list of all class members with links to the classes they belong to:

- s -

• CCopasiSelectionDialog() : CCopasiSelectionDialog
• CCopasiSelectionWidget() : CCopasiSelectionWidget
• CCopasiSpringLayout() : CCopasiSpringLayout
• CCopasiStaticString() : CCopasiStaticString
• CSBMLExporter() : CSBMLExporter
• CSBMLunit() : CSBMLunit
• CSBMLunitInformation() : CSBMLunitInformation
• CSBMLunitInterface() : CSBMLunitInterface
• CSC : CEvaluationNodeFunction , CNormalFunction
• CScanContainerWidget() : CScanContainerWidget
• CScanItem() : CScanItem
• CScanItemData() : CScanItemData
• CScanItemLinear() : CScanItemLinear
• CScanItemRandom() : CScanItemRandom
• CScanItemRepeat() : CScanItemRepeat
• CScanMethod() : CScanMethod
• CScanProblem() : CScanProblem
• CScanTask() : CScanTask
• CScanWidgetRandom() : CScanWidgetRandom
• CScanWidgetRepeat() : CScanWidgetRepeat
• CScanWidgetScan() : CScanWidgetScan
• CScanWidgetTask() : CScanWidgetTask
• CSCH : CEvaluationNodeFunction , CNormalFunction
• CSEDMLExporter() : CSEDMLExporter
• CSensItem() : CSensItem
• CSensMethod() : CSensMethod
• CSensProblem() : CSensProblem
• CSensTask() : CSensTask
• CSimSummaryInfo() : CSimSummaryInfo
• CSlider() : CSlider
• CSparseMatrix() : CSparseMatrix
• CSparseMatrixElement() : CSparseMatrixElement
• CSpeciesOrderNode() : CEFMAlgorithm::CSpeciesOrderNode
• CSPImportanceIndex() : CCSPMethod
• CSPOutput() : CCSPMethod
• CSPParticipationIndex() : CCSPMethod
• CSPradicalPointer() : CCSPMethod
• CSSAMethod() : CSSAMethod
• CStackElement() : CMathDependencyNodeIterator::CStackElement , CNodeContextIterator< Node, Context >::CStackElement
• CState() : CState
• CStateRecord() : CStateRecord
• CStateTemplate : CState , CStateTemplate
• CSteadyStateMethod() : CSteadyStateMethod
• CSteadyStateMethod::createMethod : CNewtonMethod
• CSteadyStateProblem() : CSteadyStateProblem
• CSteadyStateTask() : CSteadyStateTask
• CStepMatrix() : CStepMatrix
• CStepMatrixColumn() : CStepMatrixColumn
• CStochDirectMethod() : CStochDirectMethod
• CStochMethod() : CStochMethod
• CStochNextReactionMethod() : CStochNextReactionMethod
• CStructureParser() : CStructureParser
• s : CModel , CRandom::PoissonVars
• save() : CConfigurationFile::CXML , CConfigurationFile , CCopasiXML , CCopasiXMLInterface , CFunctionDB , CMIRIAMInfo
• Save : copasi::option_locations , copasi::options
• save() : CQCompartment , CQFittingItemWidget , CQModelValue , CQModelWidget , CQNotes , CQReportDefinition , CQSpeciesDetail , CQTabWidget , CScanItemData , CScanWidgetRandom , CScanWidgetRepeat , CScanWidgetScan , CScanWidgetTask , CTimeSeries
• save1DAttributes() : CCopasiXML
• save2DAttributes() : CCopasiXML
• save_current_attributes() : CLLayoutRenderer
• saveAnnotation() : CCopasiXML
• saveArrowHeadAttributes() : CCopasiXML
• saveBoundingBox() : CCopasiXML
• saveChanges() : CQAnimationSettingsEditor
• saveColorDefinition() : CCopasiXML
• saveCommon() : TaskWidget
• saveCurve() : CCopasiXML
• saveCurveElements() : CCopasiXML
• saved() : CQTaskHeaderWidget , CQValidator< Type >
• saveData() : CCopasiXMLInterface , CopasiPlot
• saveDataToFile() : CQBarChart , CQTSSAResultSubWidget
• saveDimensions() : CCopasiXML
• saveElement() : CCopasiXMLInterface
• saveEllipseElement() : CCopasiXML
• saveExperiment() : CQExperimentData
• saveFunctionDB() : DataModelGUI
• saveFunctionList() : CCopasiXML
• saveGlobalRenderInformation() : CCopasiXML
• saveGlobalStyle() : CCopasiXML
• saveGradientAttributes() : CCopasiXML
• saveGradientElements() : CCopasiXML
• saveGradientStop() : CCopasiXML
• saveGroupElement() : CCopasiXML
• saveGUI() : CCopasiXML
• saveImage() : CQLayoutMainWindow
• saveImageElement() : CCopasiXML
• saveLayoutList() : CCopasiXML
• saveLinearGradient() : CCopasiXML
• saveLineEnding() : CCopasiXML
• saveListOfGlobalRenderInformation() : CCopasiXML
• saveListOfLocalRenderInformation() : CCopasiXML
• saveLocalRenderInformation() : CCopasiXML
• saveLocalStyle() : CCopasiXML
• saveMethod() : CQTaskMethodWidget , TaskWidget
• saveMML() : CQDifferentialEquations , CQExpressionMmlStackedWidget
• saveModel() : CCopasiDataModel , CCopasiXML , DataModelGUI
• saveModelFinished() : DataModelGUI
• saveModelParameter() : CCopasiXML
• saveModelRun() : DataModelGUI
• saveParameter() : CCopasiXMLInterface
• saveParameterGroup() : CCopasiXMLInterface
• saveParameterTable() : CQLNAWidget , CQMCAWidget
• savePlotList() : CCopasiXML
• savePNG() : CQDifferentialEquations , CQExpressionMmlStackedWidget
• savePolygonElement() : CCopasiXML
• savePosition() : CCopasiXML
• saveRadialGradient() : CCopasiXML
• saveRectangleElement() : CCopasiXML
• saveRenderCurveElement() : CCopasiXML
• saveRenderInformationAttributes() : CCopasiXML
• saveRenderInformationDefinitionElements() : CCopasiXML
• saveRenderPoint() : CCopasiXML
• saveRenderTextElement() : CCopasiXML
• saveReportList() : CCopasiXML
• saveReportSection() : CCopasiXML
• saveSBMLReference() : CCopasiXML
• saveSelection() : CQFittingItemWidget
• saveState() : CInternalSolver
• saveStyleAttributes() : CCopasiXML
• saveStyleElements() : CCopasiXML
• saveTable() : CQExperimentData
• saveTask() : CQCrossSectionTaskWidget , CQEFMWidget , CQFittingWidget , CQLNAWidget , CQLyapWidget , CQMCAWidget , CQMoietiesTaskWidget , CQOptimizationWidget , CQOscillationTaskWidget , CQTrajectoryWidget , CQTSSAWidget , ScanWidget , SensitivitiesWidget , SteadyStateWidget , TaskWidget
• saveTaskList() : CCopasiXML
• saveTeX() : CQDifferentialEquations , CQExpressionMmlStackedWidget
• saveTextAttributes() : CCopasiXML
• saveTo() : CQAnimationSettingsEditor , CQEffectDescriptionEdit
• saveToBackend() : CLNAResultWidget , CMCAResultWidget , CQTSSAResultWidget
• SaveToCurveSpec() : BandedGraphWidget , CQPlotEditWidget , Curve2DWidget , HistoWidget
• saveToEvent() : CQEventWidget1
• saveToFile() : CQLayoutScene , CQLyapResultWidget , CQSensResultWidget , CWindowInterface , PlotWindow
• saveToFunction() : FunctionWidget1
• saveToPlotSpec() : CQPlotSubwidget
• saveToReaction() : ReactionsWidget1
• saveToStream() : CModelParameterSet
• saveTransformation2D() : CCopasiXML
• saveTransformationAttributes() : CCopasiXML
• saveWholeOutput() : CMiaseOutput
• saveXhtml() : CCopasiXMLInterface
• SBML : CCopasiDataModel
• SBML2Copasi() : CRDFGraphConverter
• SBML2CopasiChanges : CRDFGraphConverter
• SBML_MODEL_1 : test000097 , test000098
• SBML_MODEL_2 : test000097
• SBML_MODEL_BAD : test000099
• SBML_MODEL_GOOD : test000099
• SBML_STRING : test000101 , test000102 , test000103 , test000104
• sbmlId2CopasiCN() : SBMLImporter
• sbmlIdMap : SBMLImporter
• SBMLImporter() : SBMLImporter
• SBMLIncompatibility() : SBMLIncompatibility
• SBMLMap : CCopasiXMLParser::SBMLMapElement , CCopasiXMLParser::SBMLReferenceElement
• SBMLMapElement() : CCopasiXMLParser::SBMLMapElement
• SBMLReference : CCopasiXMLParser::COPASIElement , CCopasiXMLParser::SBMLReferenceElement , SBMLReference
• SBMLReferenceElement() : CCopasiXMLParser::SBMLReferenceElement
• SBMLSchema : copasi::option_locations , copasi::options
• scalarmult() : CLyapWolfMethod
• scale() : CArrow , CGraphCurve , CGraphNode , CLabel , CLayout , CLBoundingBox , CLCurve , CLDimensions , CLLineSegment , CLPoint
• Scale : CQEffectDescription , CSlider
• scaleFactor() : CQBaseWidget
• scaleHeadSize() : CArrow
• scaleMCA() : CMCAMethod
• ScaleMode : CQCopasiAnimation
• ScaleName : CSlider
• scalePosition() : CArrow , CLabel
• SCALING_MODE : CVisParameters
• scaling_targetfunction() : CSensMethod
• scaling_variables() : CSensMethod
• scan : CCopasiTask , CScanMethod
• SCAN_BREAK : CScanProblem
• SCAN_LINEAR : CScanProblem
• SCAN_RANDOM : CScanProblem
• SCAN_REPEAT : CScanProblem
• scanMethod : CCopasiMethod
• scanWidget : ListViews
• ScanWidget() : ScanWidget
• ScanWidgetLayout : ScanWidget
• ScatterSearch : CCopasiMethod
• schur() : CTSSAMethod
• schur_desc() : CTSSAMethod
• SCopasiXMLGUI() : SCopasiXMLGUI
• SCopasiXMLParserCommon() : SCopasiXMLParserCommon
• ScrollBar() : ScrollBar
• scrollBar : ScrollData , ScrollZoomer
• scrollBarMoved() : ScrollZoomer
• ScrollBarPosition : ScrollZoomer
• ScrollData() : ScrollData
• scrollview : ScanWidget
• ScrollZoomer() : ScrollZoomer
• SD : CExperiment
• SEARCH : CReadConfig
• SEC : CEvaluationNodeFunction
• sec() : CEvaluationNodeFunction
• SEC : CNormalFunction
• sech() : CEvaluationNodeFunction
• SECH : CEvaluationNodeFunction , CNormalFunction
• secure : soap_cookie
• SEDML : CCopasiDataModel
• SEDMLImporter() : SEDMLImporter
• SEDMLUtils() : SEDMLUtils
• segment_data() : CLLayoutRenderer
• segments_intersect_2d() : CLLayoutRenderer
• select() : CGA , COptMethodEP2 , COptMethodEP , COptMethodGA , COptMethodGASR , COptMethodHGASA , COptMethodSRES
• selectControl() : CQPlotSubwidget
• SELECTION_FRAME_WIDTH : CLLayoutRenderer
• SELECTION_PAGE_ID : CQAutolayoutWizard
• selectMetabolite() : CQNewMainWindow
• selectModelObject() : CQExperimentData
• selectObjects() : CQSimpleSelectionTree , ObjectBrowserDialog , ObjectBrowserWidget
• selectPlotItem() : CQPlotSubwidget
• selectReaction() : CQNewMainWindow
• selectRow() : CQFittingItemWidget
• selectTab() : CQTabWidget
• send_timeout : soap
• sendfd : soap
• sens : CCopasiTask
• SensitivitiesWidget() : SensitivitiesWidget
• sensMethod : CCopasiMethod
• sensResultWidget : ListViews
• sensWidget : ListViews
• SensWidgetComboBox() : SensWidgetComboBox
• separate() : CCopasiTask , CopasiPlot , COutputHandler , COutputInterface , CReport , CTimeSeries , PlotWindow
• separateProductArguments() : SBMLImporter
• Separator : CCopasiObject , CDirEntry
• separator : CQIconResource
• separatorChanged() : CQReportDefinition
• serializechildren() : COptMethodSS
• serializepool() : COptMethodSS
• serializepop() : COptMethodGA
• serializeprob() : COptMethodSS
• serializerefset() : COptMethodSS
• serializevector() : COptMethodSS
• session : soap , soap_cookie
• session_host : soap
• session_port : soap
• Set : CModelParameter
• set() : CXMLAttributeList
• Set_BestFoundSoFar() : COptMethodEP2 , COptMethodHGASA
• Set_CandidateValue() : COptMethodEP2 , COptMethodHGASA
• set_debug() : FlexLexer
• set_font_renderer() : CLLayoutRenderer
• Set_individual() : COptMethodEP2 , COptMethodHGASA
• Set_Maximum() : COptMethodEP2 , COptMethodHGASA
• Set_Minimum() : COptMethodEP2 , COptMethodHGASA
• Set_murvar() : COptMethodEP2 , COptMethodHGASA
• Set_NumGeneration() : COptMethodEP2 , COptMethodHGASA
• Set_NumParameter() : COptMethodEP2 , COptMethodHGASA
• Set_PopulationSize() : COptMethodEP2 , COptMethodHGASA
• setAbsoluteValue() : CLRelAbsVector
• setActive() : CPlotSpecification
• setActiveMethod() : CQTaskMethodWidget
• setActivity() : CPlotItem
• setAdvancedMode() : CQReportDefinition
• setAllBoxesChecked() : CQCurrentValueTable
• setAllBoxesUnchecked() : CQCurrentValueTable
• setAlpha() : BarColor , CLColorDefinition
• setAndSets() : CNormalLogical
• setAnimation() : CQAnimationWindow
• setAnimationMenu() : CQNewMainWindow
• setAnimationRunning() : CQLayoutMainWindow
• setAnimationToolbar() : CQNewMainWindow
• setAnnotationCN() : CArrayAnnotation
• setAnnotationM() : CCSPMethod , CILDMMethod , CILDMModifiedMethod , CTSSAMethod
• setAnnotationString() : CArrayAnnotation
• setAnyNote() : CMiaseAnnotation , CMiaseBase
• setAppend() : CReport
• setApplicationFont() : CConfigurationFile , CopasiUI3Window
• setAreaUnit() : CModel
• setArray() : CArrayAnnotation , CQMatrixDialog
• setArrayAnnotation() : CQArrayAnnotationsWidget
• setArrow() : CGraphCurve
• setArrowP() : CGraphCurve
• setAspect() : CLLayoutRenderer , CQGLLayoutPainter
• setAssociatedEntityKey() : CSlider
• setAssumeDimensionlessOne() : CSBMLunitInterface
• setAvogadro() : CModel
• setAxes() : CQBarChart
• setAxisUnits() : CopasiPlot
• setBackground() : CQRenderConverter
• setBackgroundColor() : CLRenderInformationBase , CLRenderResolver
• setBase() : ScrollBar
• setBase1() : CLLineSegment
• setBase2() : CLLineSegment
• setBasePoint1() : CLRenderCubicBezier
• setBasePoint1_X() : CLRenderCubicBezier
• setBasePoint1_Y() : CLRenderCubicBezier
• setBasePoint1_Z() : CLRenderCubicBezier
• setBasePoint2() : CLRenderCubicBezier
• setBasePoint2_X() : CLRenderCubicBezier
• setBasePoint2_Y() : CLRenderCubicBezier
• setBasePoint2_Z() : CLRenderCubicBezier
• setBest() : CGA
• setBit() : CZeroSet
• setBlankNodeId() : CRDFObject , CRDFSubject
• setBlue() : CLColorDefinition
• setBoolean() : CQExpressionWidget
• setBooleanRequired() : CEvaluationNodeCall , CQValidatorExpression
• setBoundingBox() : CLGraphicalObject , CLLineEnding
• setBounds() : CQGLLayoutPainter
• setBrowserObject() : ObjectBrowserItem
• setCalculateStatistics() : COptProblem
• setCallBack() : CCopasiMethod , CCopasiProblem , CCopasiTask , CEFMProblem , CEFMTask , CFitProblem , CFitTask , CMoietiesTask , COptProblem , COptTask , COscillationProblem , COscillationTask
• setCallParameter() : CFunctionParameterMap
• setCandx() : CGA
• setCenter() : CLRadialGradient
• setCenter2D() : CLEllipse
• setCenter3D() : CLEllipse
• setChanged() : CMathDependencyNode , SliderDialog
• setCheck() : ObjectBrowserWidget
• setCheckMark() : ObjectBrowserWidget
• setChemEqFromString() : CChemEqInterface
• setChemEqString() : CChemEqInterface , CReactionInterface
• setChemicalEquation() : CFindDimensions
• setChild() : CCopasiNode< _Data >
• setChildren() : ConverterASTNode
• setChoices() : CNormalLogical
• setCN() : CModelParameter , CModelParameterSpecies , CQEffectDescription
• setColor() : CQValidator< Type >
• setColorCoding() : CQArrayAnnotationsWidget
• setColorMax() : CColorScaleAdvanced
• setColorMin() : CColorScaleAdvanced
• setColorMode() : CQLayoutMainWindow , CQParaPanel
• setColors() : CQBarChart
• setColorScalingAutomatic() : CQArrayAnnotationsWidget
• setColorValue() : CLColorDefinition
• setColorVector() : BarColor
• setColumnSize() : CQArrayAnnotationsWidget
• setComment() : CReportDefinition
• setCommitOnSelect() : CQComboDelegate
• setCompareResult() : CModelParameter
• setCompileFlag() : CModel
• setConcentration() : CMetab
• setConcentrationName() : CODEExporter , CODEExporterBM , CODEExporterC , CODEExporterXPPAUT
• setCondition() : CNormalChoice , CNormalChoiceLogical
• setConfiguration() : CConfigurationFile::CXML
• setConfirmOverwrite() : CReport
• setConflict() : CSBMLunitInformation
• setConstant() : CNodeK
• setConstantNodeSize() : CQGLNetworkPainter
• setConstantNodeSizeForAllSteps() : CQGLNetworkPainter
• setContinueFromCurrentState() : CScanProblem
• setContinueSimultaneousEvents() : CProcessQueue , CTrajectoryProblem
• setContradiction() : CDimension
• setConvergenceOutTolerance() : CCrossSectionProblem
• setConvergenceTolerance() : CCrossSectionProblem
• setCoordinate() : CLRelAbsVector
• setCoordinates() : CLImage , CLLinearGradient , CLRadialGradient , CLRectangle , CLText
• setCoordinatesAndSize() : CLRectangle
• setCopasiDM() : CQBrowserPaneDM
• setCopasiMainWindow() : WizardDialog
• setCopasiVector() : CArrayAnnotation
• setCornerWidget() : ScrollZoomer
• setCorrectSliderObject() : SliderDialog
• setCorrectUsage() : SBMLImporter
• setCreatedDT() : CMIRIAMInfo
• setCreateParameterSets() : CFitProblem
• setCrossingsLimit() : CCrossSectionProblem
• setCrossValidationSet() : CQFittingItemWidget
• setCurrentFolderId() : SliderDialog
• setCurrentIndex() : CQPlotSubwidget
• setCurrentObjectList() : SensWidgetComboBox
• setCurrentPosition() : CQGLLayoutPainter , CQGLNetworkPainter
• setCurrentPositionX() : CQGLLayoutPainter , CQGLNetworkPainter
• setCurrentPositionY() : CQGLLayoutPainter , CQGLNetworkPainter
• setCurrentSlider() : SliderDialog
• setCurrentState() : CTrajectoryMethod , CTSSAMethod
• setCurrentStep() : CQAnimationControls , CQPlayerControlWidget
• setCurve() : CLGlyphWithCurve
• setCurvesVisibility() : CopasiPlot
• setCX() : CLEllipse
• setCY() : CLEllipse
• setCZ() : CLEllipse
• setDashArray() : CLGraphicalPrimitive1D
• setData() : CCopasiNode< _Data > , CEvaluationNodeCall , CEvaluationNodeObject , CQBarChart , CQBaseDataModel , CQBiologicalDescriptionDM , CQCompartmentDM , CQCreatorDM , CQEFMNetReactionDM , CQEFMReactionDM , CQEFMSpeciesDM , CQEventDM , CQFluxModeDM , CQFunctionDM , CQGlobalQuantityDM , CQLayoutsDM , CQModifiedDM , CQParameterOverviewDM , CQParameterSetsDM , CQPlotDM , CQReactionDM , CQReferenceDM , CQReportDM , CQSpecieDM , CQTimeSeriesDM
• setDatamodel() : CCopasiXML , CCopasiXMLParser
• setDataModel() : CQLayoutView , ListViews
• setDataSize() : C2DPlotCurve
• setDataType() : CRDFLiteral
• setDate() : CModification
• setDeducedObjectRoles() : CLRenderResolver
• setDeduceSpeciesReferenceRoles() : CLLayoutRenderer
• setDefault() : SliderDialog
• setDefaults() : CWriteConfig
• setDefinedSliders() : SliderSettingsDialog
• setDelayAssignment() : CEvent
• setDelayExpression() : CEvent , CMathEventN
• setDelayExpressionPtr() : CEvent
• setDenominator() : CNormalFraction
• setDenominatorOne() : CNormalFraction
• setDenominatorsOne() : CNormalProduct
• setDependentOn() : CMetab
• setDepth() : CLDimensions
• setDerivedElement() : CCopasiXMLParser::ParameterGroupElement
• setDescription() : CArrayAnnotation , CReference
• setDescriptions() : CQBarChart
• setDimension() : CDimension
• setDimensionality() : CCompartment
• setDimensionDescription() : CArrayAnnotation
• setDimensions() : CLayout , CLBoundingBox , CLGraphicalObject , CLImage
• setDirectDependencies() : CCopasiObject
• setDisplayName() : CMIRIAMResourceObject
• setDisplayRole() : CQBrowserPaneDM::CNode
• setDivergenceRequested() : CLyapProblem
• setDuration() : CTrajectoryProblem , CTSSAProblem
• setEditorData() : CQComboDelegate , CQDateTimeEditDelegate , CQPushButtonDelegate , CQSpinBoxDelegate
• setEigenValueStatus() : CLNAMethod
• setEmail() : CCreator
• setEnabled() : CDataModelRenameHandler , CRenameHandler
• setEnableRotationalMapping() : CLLineEnding
• setEnd() : CLLineSegment
• setEndColor() : CQEffectDescription
• setEndHead() : CLGroup , CLRenderCurve
• setEquation() : CQReactionDM
• setEventCallBack() : CProcessQueue
• setExp() : CNormalItemPower
• setExperimentSet() : CQFittingItemWidget
• setExperimentType() : CExperiment
• setExpertMode() : CCopasiSelectionWidget
• setExponentNumber() : CLyapProblem
• setExportCOPASIMIRIAM() : CSBMLExporter
• setExportName() : CODEExporterC
• setExportNameOfFunction() : CODEExporterC
• setExpression() : CEventAssignment , CMathEventN::CAssignment , CMathEventN::CTrigger , CMathObject , CModelEntity , CQExpressionWidget
• setExpressionPtr() : CEventAssignment , CMathObject , CModelEntity
• setExpressionType() : CQExpressionWidget
• setFactor() : CColorScaleAverage , CMCAMethod , CNormalProduct
• setFalseExpression() : CNormalChoice , CNormalChoiceLogical
• setFamilyName() : CCreator
• setFast() : CReaction
• setFieldValue() : CRDFNode
• setFileName() : CExperiment , CExperimentFileInfo
• setFilename() : CFunctionDB
• setFillColor() : CLGraphicalPrimitive2D
• setFillRule() : CLGraphicalPrimitive2D
• setFilteredText() : CQMessageBox
• setFireAtInitialTime() : CEvent
• setFirstRow() : CExperiment
• setFlagConc() : CQSpecieDM
• setFlagLimitConvergence() : CCrossSectionProblem
• setFlagLimitCrossings() : CCrossSectionProblem
• setFlagLimitOutConvergence() : CCrossSectionProblem
• setFlagLimitOutCrossings() : CCrossSectionProblem
• setFlagLimitOutTime() : CCrossSectionProblem
• setFocalPoint() : CLRadialGradient
• setFocusOnBars() : CQArrayAnnotationsWidget
• setFocusOnTable() : CQArrayAnnotationsWidget
• setFogColor() : CLLayoutRenderer , CQGLLayoutPainter
• setFogDensity() : CLLayoutRenderer , CQGLLayoutPainter
• setFontFamily() : CLGroup , CLText
• setFontSize() : CLGroup , CLText , CQGLNetworkPainter
• setFontSizeAction : CQGLNetworkPainter
• setFontSizeForLabels() : CQGLNetworkPainter , CQLayoutMainWindow
• setFontStyle() : CLGroup , CLText
• setFontWeight() : CLGroup , CLText
• setFraction() : CNormalFunction
• setFractions() : CNormalCall , CNormalSum
• setFramework() : CopasiWidget , CQMoietiesTaskResult , CQParameterOverviewDM , CQParameterOverviewWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesDetail , CQSpeciesWidget , CQTimeSeriesDM , CQTimeSeriesWidget , DataModelGUI , ListViews , ReactionsWidget1 , SliderDialog , StateSubwidget
• setFunction() : CQExpressionWidget , CReaction
• setFunctionAndDoMapping() : CReactionInterface
• setFunctionFromExpressionTree() : CReaction
• setFunctionList() : CCopasiXML , CCopasiXMLParser
• setFunctionSBMLIds() : CSBMLExporter
• setFunctionWithEmptyMapping() : CReactionInterface
• setGeneration() : CGA
• setGivenName() : CCreator
• setGlobalQuantityCN() : CModelParameterReactionParameter
• setGlobalScaling() : CQLayoutMainWindow , CQParaPanel
• setGraphicalObjectKey() : CLTextGlyph
• setGraphMenu() : CQNewMainWindow
• setGraphSize() : CQGLNetworkPainter
• setGraphToolbar() : CQNewMainWindow
• setGreen() : CLColorDefinition
• setGroup() : CLLineEnding , CLStyle
• setGUI() : CCopasiXML , CCopasiXMLParser
• setGuiDM() : CQBrowserPaneDM
• setHeaderRow() : CExperiment
• setHeight() : CLDimensions , CLGraphicalObject , CLImage , CLRectangle
• setHighlightColor() : CLLayoutRenderer , CQGLLayoutPainter
• setHighlightedObjects() : CLLayoutRenderer , CQGLLayoutPainter
• setHighlightFlag() : CLLayoutRenderer , CQGLLayoutPainter
• setHScrollBarMode() : ScrollZoomer
• setHScrollBarPosition() : ScrollZoomer
• setId() : CBiologicalDescription , CLColorDefinition , CLGradientBase , CLLineEnding , CMiaseBaseEnhanced , CMiaseColumn , CMiasePlot2D , CMIRIAMResourceObject , CRDFNode , CReference
• setIgnoreUpdates() : CopasiWidget
• setImageReference() : CLImage
• setImageTexturizer() : CLLayoutRenderer
• setImportCOPASIMIRIAM() : SBMLImporter
• setImportHandler() : SBMLImporter , SEDMLImporter
• setIncrement() : C2DPlotCurve
• setIndex() : CNodeK , CUpDownSubwidget
• setIndividualScaling() : CQLayoutMainWindow , CQParaPanel
• setIndv() : CGA
• setInfix() : CEvaluationTree , CExpression , CFunction , CMassAction
• setInfo() : CSBMLunitInformation
• setInitialConcentration() : CMetab
• setInitialExpression() : CModelEntity , CModelParameter
• setInitialExpressionPtr() : CModelEntity
• setInitialState() : CLNAProblem , CMathContainer , CMCAProblem , CModel , CSteadyStateTask
• setInitialTime() : CMiaseUniformTimeCourse , CModel
• setInitialValue() : CModelEntity
• setInitialValuePtr() : CModelEntity
• setInitialValues() : SBMLImporter
• setInverted() : ScrollBar
• setIsBezier() : CLLineSegment
• setIsBoolean() : CExpression
• setIsGUI() : CCopasiMessage
• setIsNegated() : CNormalLogical
• setIsRowOriented() : CExperiment
• setIsTable() : CReportDefinition
• setIsUsed() : CColorScale , CFunctionParameter
• setItem() : CNormalItemPower
• setItemAnimated() : CQGLNetworkPainter
• setItemPowers() : CNormalProduct
• setItems() : CQComboDelegate
• setItemSelection() : CQFittingItemWidget
• setItemType() : CQFittingItemWidget
• setIterator() : CStepMatrixColumn
• setJacobianRequested() : CSteadyStateProblem
• setKey() : CQBrowserPaneDM::CNode
• setKeyIndex() : CQCurrentValueTable
• setKeyList() : CLLocalStyle
• setLabelText() : CGraphNode
• setLanguage() : CRDFLiteral
• setLastRow() : CExperiment
• setLayout() : CQLayoutMainWindow , CQLayoutScene
• setLayoutList() : CCopasiXML , CCopasiXMLParser
• setLeft() : CNodeK , CNormalGeneralPower , CNormalLogicalItem
• setLegend() : CQBarChart
• setLegendEnabled() : CQArrayAnnotationsWidget
• setLengthUnit() : CModel
• setLexicalData() : CRDFLiteral
• setLine() : CArrow
• setListOfLayouts() : CQLayoutsDM
• setListOfModelParameterSets() : CQParameterSetsDM
• setListType() : CSensItem
• setLiteral() : CRDFObject
• setLocal() : CReactionInterface
• setLocalValue() : CFitItem , CReactionInterface
• setLog() : CColorScaleSimple
• setLogScale() : ScrollBar
• setLogX() : CPlotSpecification
• setLogY() : CPlotSpecification
• setLowerBound() : COptItem
• setMainWindow() : CQCopasiApplication
• setMapping() : CReactionInterface
• setMaster() : COutputHandler
• setMatrix() : CLTransformation2D , CLTransformation
• setMatrix2D() : CLTransformation2D
• setMax() : CGA
• setMaximize() : COptProblem
• setMaxIntensityPoint() : CColorScaleBiLog
• setMaxNodeSize() : CQLayoutMainWindow
• setMaxOverallConcentration() : CSimSummaryInfo
• setMaxValue() : CopasiSlider , CQLayoutMainWindow , CSlider , NodeSizePanel
• setMaxX() : CQGLLayoutPainter
• setMaxY() : CQGLLayoutPainter
• setMessageShown() : CopasiUI3Window
• setMetabGlyphKey() : CLMetabReferenceGlyph
• setMetabolite() : CChemEqElement
• setMetaId() : CMiaseBase
• setMethodType() : CCopasiTask , CCrossSectionTask , CEFMTask , CFitTask , CLyapTask , CMoietiesTask , COptTask , COscillationTask , CTrajectoryTask , CTSSATask
• setMiaseSed() : CMiaseML
• setMin() : CGA
• setMinAndMaxValue() : CQLayoutMainWindow
• setMinAndMaxValues() : NodeSizePanel
• setMinMax() : CColorScaleSimple
• setMinNodeSize() : CQLayoutMainWindow
• setMinorMajorFactor() : CopasiSlider
• setMinValue() : CopasiSlider , CQLayoutMainWindow , CSlider , NodeSizePanel
• setMinX() : CQGLLayoutPainter
• setMinY() : CQGLLayoutPainter
• setMiriamAnnotation() : CAnnotation
• setMIRIAMCitation() : CMIRIAMResource
• setMIRIAMDisplayName() : CMIRIAMResource
• setMIRIAMLastUpdateDate() : CMIRIAMResources
• setMIRIAMPattern() : CMIRIAMResource
• setMIRIAMResources() : CMIRIAMResourceObject
• setMIRIAMUpdateFrequencyInDays() : CMIRIAMResources
• setMIRIAMURI() : CMIRIAMResource
• setMode() : CArrayAnnotation , CQEffectDescription , CQNewMainWindow
• setModel() : CCopasiPlotSelectionDialog , CCopasiProblem , CCopasiSelectionDialog , CCopasiXML , CFitProblem , CLNAMethod , CLNAProblem , CMCAMethod , CMCAProblem , CModelAdd , CModelExpansion , CModelMerging , CModelParameterSet , COptProblem , COscillationProblem , CPlotSelectionDialog , CQPlotEditWidget , CQTableView , CTSSAMethod , Expression2PresentationMML , SliderSettingsDialog
• setModelData() : CQComboDelegate , CQDateTimeEditDelegate , CQIndexComboDelegate , CQPushButtonDelegate , CQSpinBoxDelegate
• setModelObjectKey() : CLGraphicalObject
• setModelParameterset() : CQParameterOverviewDM
• setModelReference() : CMiaseTask
• setModelType() : CModel
• setModulus() : CRandom
• setMolecularitiesForMassAction() : CFindDimensions
• setMultipleEditMode() : BandedGraphWidget , CQPlotEditWidget , Curve2DWidget , HistoWidget
• setMultiplicity() : CChemEq , CChemEqElement
• setMutVar() : CGA
• setName() : CLRenderInformationBase , CMiaseBaseEnhanced , CMiaseColumn , CMiaseMeasurementData , CMiasePlot2D , CNodeK , CNormalCall , CNormalItem , CProcessReport , CProgressBar , CXMLAttributeList
• setNewMath() : CMiaseChangeMath
• setNewValue() : CMiaseChangeAttribute
• setNode() : CMIRIAMResourceObject
• setNodeSize() : CQGLNetworkPainter
• setNodeSizeWithoutChangingCurves() : CQGLNetworkPainter
• setNormalizePerExperiment() : CConfigurationFile
• setNormalizeWeightsPerExperiment() : CExperiment
• setNotes() : CAnnotation , CMiaseNotes
• setNumberOfPoints() : CMiaseUniformTimeCourse
• setNumCols() : CExperimentObjectMap , CQCurrentValueTable
• setNumColumns() : CExperiment
• setNumerator() : CNormalFraction
• setNumMinorTicks() : CopasiSlider
• setNumRows() : CQCurrentValueTable
• setNumSteps() : CQAnimationControls , CQPlayerControlWidget
• setObject() : CopasiSlider , CRDFNode
• setObjectCN() : CExperimentObjectMap::CDataColumn , CExperimentObjectMap , COptItem
• setObjectiveFunction() : COptProblem
• setObjectKey() : CCompartmentGraphNode , CGraphNode
• setObjectName() : CCopasiObject
• setObjectNameVector() : CReportTable
• setObjectParent() : CCopasiObject , CEvent , CEventAssignment , CMetab , CModelEntity , CModelParameterSet , CMoiety , CReaction
• setObjectRole() : CLGraphicalObject
• setObjectType() : ObjectBrowserItem
• setObjectValue() : CCopasiObject
• setObjectValuePtr() : CEvaluationNodeObject
• setODEName() : CODEExporter , CODEExporterBM , CODEExporterC , CODEExporterXPPAUT
• setOfConstantMetabolites : CQGLNetworkPainter
• setOfDisabledMetabolites : CQGLNetworkPainter
• setOffset() : CLGradientStop
• setOffsets() : CLRenderPoint
• setOldIndex() : CNodeK
• setOnlyAlgebraicDependencies() : CDotOutput
• setORG() : CCreator
• setOriginalValue() : CopasiSlider , CSlider
• setOstream() : CInternalSolver , Cxerrwd
• setOutCrossingsLimit() : CCrossSectionProblem
• setOutputDefinitionVector() : COutputHandlerPlot
• setOutputEndTime() : CMiaseUniformTimeCourse
• setOutputEvent() : CTrajectoryProblem
• setOutputInSubtask() : CScanProblem
• setOutputStartTime() : CMiaseUniformTimeCourse , CTrajectoryProblem , CTSSAProblem
• setOutputVector() : CCopasiSelectionDialog , CCopasiSelectionWidget , CQSimpleSelectionTree , ObjectBrowserDialog , ObjectBrowserWidget
• setOutputVectors() : CCopasiPlotSelectionDialog , CPlotSelectionDialog
• setpar_() : CTruncatedNewton
• setParameterMapping() : CReaction
• setParameterMappingVector() : CReaction
• setParameterValue() : CReaction
• setParamNum() : CGA
• setParent() : CCopasiNode< _Data > , CModelParameter
• setParentWindow() : SliderDialog
• setPersistentTrigger() : CEvent
• setPlotList() : CCopasiXML
• setPlotTitle() : CQBarChart
• setPoint() : CArrow
• setPoint1() : CLLinearGradient
• setPoint2() : CLLinearGradient
• setPopSize() : CGA
• setPosition() : CLBoundingBox , CLGraphicalObject
• setPositiveDirection() : CCrossSectionProblem
• setPrecision() : CReportDefinition
• setPredicate() : CBiologicalDescription
• setPrintTitle() : CReportTable
• setPriorityExpression() : CEvent , CMathEventN
• setPriorityExpressionPtr() : CEvent
• setProblem() : CLyapMethod , CMoietiesMethod , COptMethod , COscillationMethod , CScanMethod , CTrajectoryMethod , CTSSAMethod
• setProcessingModes() : CMathDependencyNodeIterator , CNodeContextIterator< Node, Context >
• setProducts() : CNormalSum
• setQuantityUnit() : CModel
• setRadii() : CLEllipse , CLRectangle
• setRadius() : CLRadialGradient
• setRadiusX() : CLRectangle
• setRadiusY() : CLRectangle
• setRandomizeStartValues() : COptProblem
• setRange() : CQValidatorDouble , CQValidatorInt
• setRate() : CModelEntity
• setReaction() : Expression2PresentationMML
• setReadOnly() : CQExpressionMmlStackedWidget
• setRealProblem() : CGA
• setRecentMIRIAMResources() : CConfigurationFile
• setRed() : CLColorDefinition
• setReference() : CCopasiObjectReference< CType >
• setReferenceRenderInformationKey() : CLRenderInformationBase
• setRefresh() : CCopasiObject
• setRelativeValue() : CLRelAbsVector
• setRenameHandler() : CCopasiObject
• setRenderInformation() : CQLayoutScene
• setReport() : CQReportDefinitionSelect
• setReportDefinition() : CReport
• setReportList() : CCopasiXML
• setRequested() : CMathDependencyNode
• setReservedNames() : CODEExporter , CODEExporterBM , CODEExporterC , CODEExporterXPPAUT
• setResidualsRequired() : CFitProblem
• setResolver() : CQCopasiGraphicsItem , CQLayoutScene
• setResource() : CBiologicalDescription , CRDFObject , CRDFSubject , CReference
• setReversibility() : CChemEq , CChemEqInterface , CReactionInterface
• setReversible() : CFunction , CReaction
• setRGBA() : CLColorDefinition
• setRight() : CNodeK , CNormalGeneralPower , CNormalLogicalItem
• setRole() : CExperimentObjectMap::CDataColumn , CExperimentObjectMap , CGraphCurve , CLMetabReferenceGlyph , CLReferenceGlyph
• setRoleList() : CLStyle
• setRoot() : CEvaluationTree , CMathExpression
• setRowInTable() : CQCurrentValueTable
• setRX() : CLEllipse
• setRY() : CLEllipse
• setSBMLDocument() : CCellDesignerImporter
• setSBMLFileName() : CCopasiDataModel
• setSBMLId() : CEvent , CFunction , CModelEntity , CReaction
• setSBMLNotes() : CSBMLExporter
• setScale() : CExperimentObjectMap::CDataColumn , CExperimentObjectMap , CQBarChart , CQCopasiEffect
• setScaleEnd() : CQEffectDescription
• setScaleMode() : CQCopasiAnimation , CQGLNetworkPainter
• setScaleStart() : CQEffectDescription
• setScaling() : CSlider
• setScalingFactor() : CReaction
• setScene() : CQAnimationWindow
• setScheduled() : CCopasiTask
• setSelection() : CQGLLayoutPainter
• setSelectionBox() : CLLayoutRenderer
• setSelectionList() : CQNameSelectionDialog
• setSeparator() : CExperiment , CReportDefinition , CReportTable , CTableCell
• setSibling() : CCopasiNode< _Data >
• setSimulationReference() : CMiaseTask
• setSimulationType() : CMathObject , CModelParameter
• setSingleObject() : CQCrossSectionTaskWidget
• setSingleObjectCN() : CCrossSectionProblem , CSensItem
• setSingleSelection() : CCopasiSelectionDialog , CCopasiSelectionWidget
• setSize() : C2DCurveData , CBandedGraphData , CGraphNode , CHistoCurveData , CLRectangle
• setSizeMode() : CQLayoutMainWindow , CQParaPanel
• setSkipDependenciesOnCompartments() : CDotOutput
• setSlider() : CQBarChart , CQBaseWidget , SliderSettingsDialog
• setSliderActive() : CQBaseWidget
• setSliderObject() : CSlider
• setSliderType() : CSlider
• setSliderValue() : CSlider
• setSolution() : CFitProblem , COptProblem
• setSource() : CMiaseMeasurementData , CMiaseModel
• setSpeciesGlyphId() : CCellDesignerImporter
• setSpeciesList() : CQSideCompoundWizardPage
• setSpeciesReferenceId() : CCellDesignerImporter
• setSpreadMethod() : CLGradientBase
• setStabilityAnalysisRequested() : CSteadyStateProblem
• setStart() : CLLineSegment
• setStartColor() : CQEffectDescription
• setStartHead() : CLGroup , CLRenderCurve
• setStartValue() : COptItem
• setState() : CAbstractLayoutInterface , CCopasiSpringLayout , CHybridMethod , CHybridMethodLSODA , CMathContainer , CModel
• setStateReduced() : CMathContainer
• setStatus() : CFunctionAnalyzer::CValue , CMetab , CModelEntity
• setStatusMessage() : CQNewMainWindow
• setSteadyStateRequested() : CLNAProblem , CMCAProblem
• setSteadyStateResolution() : CLNAMethod , CMCAMethod
• setSteadyStateStatus() : CLNAMethod
• setSteadyStateTask() : CMCAMethod
• setStepNumber() : CQParaPanel , CTrajectoryProblem , CTSSAProblem
• setStepSize() : CTrajectoryProblem , CTSSAProblem
• setStepsPerSecond() : CQLayoutMainWindow
• setStopColor() : CLGradientStop
• setString() : CVersion
• setStroke() : CLGraphicalPrimitive1D
• setStrokeWidth() : CLGraphicalPrimitive1D
• setStyle() : CQCopasiGraphicsItem
• setSubject() : CRDFNode
• setSubtask() : CScanProblem
• setSubtaskType() : COptProblem
• setSubTaskType() : CSensProblem
• setSubtype() : CNodeK
• setSymmetric() : CColorScaleSimple
• setSynced() : CSlider
• setTable() : CReportBody
• setTableText() : CQFittingItemWidget
• setTabOrder() : CCopasiPlotSelectionDialog , CPlotSelectionDialog
• setTag() : CLBase
• setTarget() : CMathEventN::CAssignment , CMiaseChange , CReport
• setTargetGlyphKey() : CLReferenceGlyph
• setTargetKey() : CEventAssignment
• setTargetValues() : CMathEvent
• setTask() : CQEFMNetReactionDM , CQEFMReactionDM , CQEFMSpeciesDM , CQFluxModeDM , CQTaskMethodWidget , DefaultPlotDialog
• setTaskList() : CCopasiXML
• setTaskName() : CQTaskHeaderWidget
• setTaskType() : CReportDefinition
• setText() : CLText , CLTextGlyph , CQMessageBox , MyLineEdit
• setTextAnchor() : CLGroup , CLText
• setThreshold() : CColorScale1 , CCrossSectionProblem , CCrossValidationSet
• setTickFactor() : CSlider
• setTickNumber() : CSlider
• setTime() : CModel , CState
• setTimeLimit() : CCrossSectionProblem
• setTimeSeries() : CQTimeSeriesDM
• setTimeSeriesRequested() : CTrajectoryProblem , CTSSAProblem
• setTimeUnit() : CModel
• setTitle() : CPlotItem , CQTimeSeriesWidget , CReportDefinition
• setTransientTime() : CLyapProblem
• setTransitionTime() : CMetab
• setTree() : CEvaluationTree
• setTreshold() : CSparseMatrix
• setTriggerExpression() : CEvent , CMathEventN
• setTriggerExpressionPtr() : CEvent
• setTriplet() : CQRDFTreeViewItem
• setTrueExpression() : CNormalChoice , CNormalChoiceLogical
• setType() : CCopasiTask , CEvaluationTree , CEvent , CFunctionParameter , CMiaseModel , CNodeK , CNormalCall , CNormalFunction , CNormalGeneralPower , CNormalItem , CNormalLogicalItem , CopasiSlider , CPlotItem , CRDFLiteral , CRDFObject , CRDFSubject
• setTypeItems() : CQExperimentData
• setTypeList() : CLStyle
• setucr_() : CTruncatedNewton
• setUncheck() : ObjectBrowserWidget
• setUnitInterface() : Expression2PresentationMMLUnits
• setUnknown() : CDimension
• setUp() : test000021 , test000022 , test000023 , test000024 , test000025 , test000026 , test000027 , test000028 , test000029 , test000030 , test000031 , test000032 , test000033 , test000034 , test000035 , test000036 , test000037 , test000038 , test000039 , test000040 , test000041 , test000042 , test000043 , test000044 , test000045 , test000046 , test000047 , test000048 , test000049 , test000050 , test000051 , test000052 , test000053 , test000054 , test000055 , test000056 , test000057 , test000058 , test000059 , test000060 , test000061 , test000062 , test000063 , test000064 , test000065 , test000066 , test000067 , test000068 , test000069 , test000070 , test000071 , test000072 , test000073 , test000074 , test000075 , test000076 , test000077 , test000078 , test000079 , test000080 , test000081 , test000082 , test000083 , test000084 , test000085 , test000086 , test000087 , test000088 , test000089 , test000090 , test000091 , test000092 , test000093 , test000094 , test000095 , test000096 , test000097 , test000098 , test000099 , test000100 , test000101 , test000102 , test000103 , test000104 , test_biomodels217_expression , test_compare_utilities , test_depth_first_iterator , test_simplify
• setupBalances() : CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45
• setupCalculateSet() : CHybridMethodODE45
• setUpdateMethod() : CCopasiObject
• setUpdateModel() : CCopasiTask
• setupDependencyGraph() : CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45
• setupDependencyGraphAndBalances() : CStochMethod
• setupDimensions() : CFindDimensions
• setupMetab2React() : CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45
• setupMetab2ReactComplete() : CHybridMethod , CHybridMethodLSODA
• setupMetab2ReactPlusModifier() : CHybridMethod , CHybridMethodLSODA
• setupMetabFlags() : CHybridMethodODE45
• setupMethod() : CHybridMethodODE45
• setupPartition() : CHybridMethod , CHybridMethodLSODA
• setUpperBound() : COptItem
• setupPriorityQueue() : CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45 , CStochNextReactionMethod
• setupReactAffect() : CHybridMethodODE45
• setupReactionFlags() : CHybridMethodODE45
• setupWidget() : MyLineEdit
• setURI() : CMIRIAMResourceObject , CRDFPredicate
• setURL() : SBMLReference
• setUsage() : CFunctionParameter
• setUseAdvancedEditing() : CConfigurationFile
• setUseAdvancedSliders() : CConfigurationFile
• setUsed() : CModelEntity
• setUseHeuristics() : CFindDimensions
• setUseOpenGL() : CConfigurationFile
• setUseReactionNameInLocalParameters() : Expression2PresentationMML
• setUserOrder() : CStateTemplate
• setValidateUnits() : CConfigurationFile
• setValidMethods() : CQTaskMethodWidget
• setValue() : CCopasiParameter , CCopasiParameterGroup , CFunctionAnalyzer::CValue , CModelEntity , CModelParameter , CModelParameterCompartment , CModelParameterSpecies , CopasiSlider , COptions::COptionValue , COptions , CQCurrentValueTable , CSensMethod , CXMLAttributeList
• setValueFromDOUBLE() : CQProgressItemBar , CQProgressItemText
• setValueFromINT() : CQProgressItemBar , CQProgressItemText
• setValueFromSTRING() : CQProgressItemText
• setValueFromUINT() : CQProgressItemBar , CQProgressItemText
• setValueOnSlider() : CQLayoutMainWindow
• setValuePtr() : CModelEntity
• setValues() : CFittingPoint , CMathContainer
• setVariable() : CWriteConfig
• setVData() : CMiasePlot2D
• setVectors() : CCSPMethod , CILDMMethod , CILDMModifiedMethod , CTSSAMethod
• setVectorsToNaN() : CCSPMethod
• setVersion() : CMiaseML , CVersion
• setVolumeUnit() : CModel
• setVScrollBarMode() : ScrollZoomer
• setVScrollBarPosition() : ScrollZoomer
• setVTextAnchor() : CLGroup , CLText
• setWeight() : CCrossValidationSet
• setWeightMethod() : CExperiment
• setWhitepoint() : CColorScaleBiLog
• setWidth() : CLDimensions , CLGraphicalObject , CLImage , CLRectangle
• setWorkingDirectory() : CConfigurationFile
• setX() : CLGraphicalObject , CLImage , CLLayoutRenderer , CLPoint , CLRectangle , CLRenderPoint , CLText
• setXData() : CMiasePlot2D
• setXmlNs() : CMiaseAnnotation , CMiaseBase
• setXmlns() : CMiaseML
• setXmlNs() : CMiaseNotes
• setXOffset() : CLRenderPoint
• setY() : CLGraphicalObject , CLImage , CLLayoutRenderer , CLPoint , CLRectangle , CLRenderPoint , CLText
• setYOffset() : CLRenderPoint
• setZ() : CLImage , CLPoint , CLRectangle , CLRenderPoint , CLText
• setZOffset() : CLRenderPoint
• setZoom() : CQBarChart
• setZoomFactor() : CLLayoutRenderer , CQGLLayoutPainter , CQGLLayoutViewer , CQGLNetworkPainter , CQGLViewport , CQLayoutMainWindow
• SEVERITY : SBMLIncompatibility
• sexpo : CRandom::ExpVars
• sFun() : COptMethodTruncatedNewton
• shallowCopy() : ConverterASTNode
• shapeOfLabels : CQGLNetworkPainter
• showAnimation() : CQLayoutMainWindow
• showButtons() : CQLayoutsWidget
• showColorLegend() : CQBarChart
• showColumn : ColumnScale
• showCurve() : CopasiPlot
• showDelayExpression() : CQEventWidget1
• showEvent() : CQMiriamWidget , SliderDialog
• showLegend() : CQBarChart
• showMethodParameters() : CQTaskMethodWidget
• showOptionsControls() : SliderSettingsDialog
• showRow : RowScale
• showStep() : CQAnimationControls , CQGLNetworkPainter , CQLayoutMainWindow
• showUnits() : CQCrossSectionTaskWidget , CQTrajectoryWidget , StateSubwidget
• shuffle() : CGA , CPermutation
• SIDE_COMPOUND_PAGE_ID : CQAutolayoutWizard
• SIDEPRODUCT : CLMetabReferenceGlyph
• SIDESUBSTRATE : CLMetabReferenceGlyph
• signalAddItem() : CProgressBar
• signalChanged() : ParameterTable
• signalCheckValidity() : CQExpressionMmlStackedWidget
• signalCloseEditor() : CQParameterOverviewDM
• signalFinishItem() : CProgressBar
• signalFolderChanged() : ListViews
• signalLoadFile() : CopasiUI3Window
• signalOpenEditor() : CQParameterOverviewDM
• signalProgressAll() : CProgressBar
• signalQuit() : CopasiUI3Window
• signalSetName() : CProgressBar
• signalZoomIn() : CQGLNetworkPainter
• signalZoomOut() : CQGLNetworkPainter
• simpleCall() : CDotOutput , CModelAdd , CModelExpansion , CModelMerging
• simplify() : CNormalBase , CNormalCall , CNormalChoice , CNormalChoiceLogical , CNormalFraction , CNormalFunction , CNormalGeneralPower , CNormalItem , CNormalItemPower , CNormalLogical , CNormalLogicalItem , CNormalProduct , CNormalSum , CNormalTranslation
• SIMPLIFY : recursion_limit_exception
• simplifyNode() : CEvaluationNode , CEvaluationNodeFunction , CEvaluationNodeOperator
• simplifyTree() : CNormalTranslation
• simplifyTreeReptdly() : CNormalTranslation
• SimulatedAnnealing : CCopasiMethod
• SimulationContext : CMath
• SimulationContextFlag : CMath
• SimulationType : CMath
• SimulationTypeUndefined : CMath
• simWiz : CPlotItem
• SIN : CEvaluationNodeFunction , CNormalFunction
• SINGLE_OBJECT : CObjectLists
• singleCurveSelected() : CQGLLayoutPainter , CQGLLayoutViewer
• singularJacobian : CNewtonMethod
• SINH : CEvaluationNodeFunction , CNormalFunction
• size() : C2DCurveData , CArrayAnnotation , CBandedGraphData , CBitPatternTree , CCallParameters< Type > , CCopasiAbstractArray , CCopasiArray , CCopasiMatrixInterface< CMatrixType > , CCopasiMessage , CCopasiParameterGroup , CCopasiVector< T > , CCopasiVectorInterface< VectorType > , CFluxMode , CFunctionParameters , CHistoCurveData , CIndexedPriorityQueue , CMath::CAllocationStack , CMath::CVariableStack , CMatrix< CType > , CModelParameterGroup , CReactionInterface , CStateTemplate , CTableauMatrix , CTableRow , CVectorCore< CType > , CXMLAttributeList , soap_attribute , soap_blist , soap_clist , soap_dime , soap_ilist , soap_multipart , soap_xlist
• SIZE_AREA_MODE : CVisParameters
• SIZE_DIAMETER_MODE : CVisParameters
• size_type : copasi::option_locations
• skip() : CXMLAttributeList
• skipBackward : CQIconResource
• skipChildren() : CMathDependencyNodeIterator , CNodeContextIterator< Node, Context >
• skipForward : CQIconResource
• skippedEntity() : CStructureParser
• skippedEntityHandler() : CExpatTemplate< CType >
• Slider : CCopasiXMLParser::ListOfSlidersElement , CCopasiXMLParser::SliderElement
• slider : CQIconResource
• sliderChanged() : SliderSettingsDialog
• SliderDialog() : SliderDialog
• SliderElement() : CCopasiXMLParser::SliderElement
• sliderMoved() : CQBarChart , CQBaseWidget , ScrollBar
• sliderObjectChanged() : SliderDialog
• sliderPressed() : CopasiSlider , SliderDialog
• sliderRange() : ScrollBar
• sliderReleased() : CopasiSlider , SliderDialog
• SliderSettingsDialog() : SliderSettingsDialog
• sliderValueChanged() : CopasiSlider , SliderDialog
• slot_backward_clicked() : CQPlayerControlWidget
• slot_forward_clicked() : CQPlayerControlWidget
• slot_pause_clicked() : CQPlayerControlWidget
• slot_play_clicked() : CQPlayerControlWidget
• slot_step_backward_clicked() : CQPlayerControlWidget
• slot_step_forward_clicked() : CQPlayerControlWidget
• slot_stop_clicked() : CQPlayerControlWidget
• slotActivateWindowTriggered() : CopasiUI3Window
• slotActualizeAssignmentExpression() : CQEventWidget1
• slotAddButtonClicked() : CQSideCompoundWizardPage
• slotAddItem() : CProgressBar , ScanWidget
• slotAddTarget() : CQEventWidget1
• slotAndAllReactions() : CQCompartmentCopyOptions
• slotAndIntReactions() : CQCompartmentCopyOptions
• slotAndSpecies() : CQCompartmentCopyOptions
• slotApplyInitialState() : CopasiUI3Window
• slotAutoLayout() : CQAnimationWindow
• slotBack() : CQAnimationControls
• slotBrowse() : CQReportDefinitionSelect
• slotBtnActivateAllClicked() : CQPlotsWidget
• slotBtnAll() : CQExperimentSelection
• slotBtnBrowseDescription() : CQMiriamWidget
• slotBtnBrowseReference() : CQMiriamWidget
• slotBtnCancel() : CQExperimentSelection , CQMergingData , CQPreferenceDialog
• slotBtnClearClicked() : CQCompartmentsWidget , CQEventsWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQMiriamWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotBtnCommit() : CQParameterOverviewWidget , CQTabWidget
• slotBtnCopy() : CQCompartment , CQEventWidget1 , CQMiriamWidget , CQModelValue , CQNotes , CQParameterOverviewWidget , CQSpeciesDetail , CQTabWidget , FunctionWidget1 , ReactionsWidget1
• slotBtnDeactivateAllClicked() : CQPlotsWidget
• slotBtnDelete() : CQCompartment , CQEventWidget1 , CQModelValue , CQParameterOverviewWidget , CQSpeciesDetail , CQTabWidget , FunctionWidget1 , ReactionsWidget1
• slotBtnDeleteClicked() : CQCompartmentsWidget , CQEventsWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQMiriamWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotBtnMerge() : CQMergingData
• slotBtnNew() : CQCompartment , CQEventWidget1 , CQModelValue , CQParameterOverviewWidget , CQSpeciesDetail , CQTabWidget , FunctionWidget1 , ReactionsWidget1
• slotBtnNewClicked() : CQCompartmentsWidget , CQEventsWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotBtnNone() : CQExperimentSelection
• slotBtnOK() : CQExperimentSelection
• slotBtnOk() : CQPreferenceDialog
• slotBtnOKClicked() : CQModelWidget
• slotBtnRevert() : CQParameterOverviewWidget , CQTabWidget
• slotBtnRevertClicked() : CQModelWidget
• slotBtnSaveAs() : CQParameterOverviewWidget
• slotBtnSaveToFile() : CQParameterOverviewWidget
• slotButtonClicked() : CQPushButtonDelegate
• slotCalculateDimensions() : CQNewMainWindow
• slotCancel() : CQExpandModelData , CQExperimentData
• slotCancelButtonClicked() : CCopasiPlotSelectionDialog , CPlotSelectionDialog
• slotCapture() : CopasiUI3Window
• slotCellChanged() : ParameterTable
• slotChangeInterval() : CQAnimationControls
• slotCheckAllClicked() : CQCurrentValueTable
• slotCheckAllCrossValidations() : CQFittingItemWidget
• slotCheckAllExperiments() : CQFittingItemWidget
• slotCheckBoxClicked() : ReactionsWidget1
• slotCheckFrom() : CQExperimentData
• slotCheckHeader() : CQExperimentData
• slotCheckLowerInf() : CQFittingItemWidget
• slotCheckModel() : CopasiUI3Window
• slotCheckNormalizeWeightsPerExperiment() : CQExperimentData
• slotCheckTab() : CQExperimentData
• slotCheckTo() : CQExperimentData
• slotCheckUpperInf() : CQFittingItemWidget
• slotChooseDelay() : CQEventWidget1
• slotChooseFunction() : SensitivitiesWidget
• slotChooseObject() : CScanWidgetRandom , CScanWidgetScan
• slotChooseSingleFunction() : SensitivitiesWidget
• slotChooseSingleVariable() : SensitivitiesWidget
• slotChooseSingleVariable2() : SensitivitiesWidget
• slotChooseSubTask() : SensitivitiesWidget
• slotChooseVariable() : CQCrossSectionTaskWidget , SensitivitiesWidget
• slotChooseVariable2() : SensitivitiesWidget
• slotCloseAllWindows() : CopasiUI3Window
• slotCloseEditor() : CQParameterOverviewWidget
• slotCloseWindow() : PlotWindow
• slotColumnSelectionChanged() : CQArrayAnnotationsWidget
• slotComboBoxSelectionChanged() : ReactionsWidget1
• slotCompartment() : CQCompartmentCopyOptions
• slotCompartmentActivated() : CQExpandModelData
• slotCompartmentChanged() : CQSpeciesDetail
• slotConstraintNumberChanged() : CQFittingWidget , CQOptimizationWidget
• slotContentCellClicked() : CQArrayAnnotationsWidget
• slotContentDoubleClicked() : CQArrayAnnotationsWidget
• slotConvertToIrreversible() : CopasiUI3Window
• slotCopy() : CQFittingItemWidget , CScanContainerWidget , CUpDownSubwidget
• slotCopyEvent() : CQMiriamWidget
• slotCreate() : DefaultPlotDialog
• slotCreateCompartments() : CQSelectionWizardPage
• slotCreatedDTChanged() : CQMiriamWidget
• slotCreateGlobalQuantity() : CQMoietiesTaskResult
• slotCrossValidationChanged() : CQFittingItemWidget
• slotCrossValidationData() : CQFittingWidget
• slotCrossValidations() : CQFittingItemWidget
• slotCurrentIdChanged() : CQAutolayoutWizard
• slotCurrentIndexChanged() : CQComboDelegate
• slotCurrentSelectionIndexChanged() : CQArrayAnnotationsWidget
• slotDel() : CScanContainerWidget , CUpDownSubwidget
• slotDelayChecked() : CQLyapWidget
• slotDelete() : CQFittingItemWidget
• slotDeleteTarget() : CQEventWidget1
• slotDeselectAll() : PlotWindow
• slotDisplayButtonClicked() : CQScreenshotOptionsDialog
• slotDocumentChanged() : CQGLLayoutViewer
• slotDoubleClicked() : CQCompartmentsWidget , CQEventsWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotDown() : CQFittingItemWidget , CScanContainerWidget , CUpDownSubwidget
• slotDrawSelectionToggled() : CQScreenshotOptionsDialog
• slotDuplicatePerExperiment() : CQFittingItemWidget
• slotDuration() : CQTrajectoryWidget , CQTSSAWidget
• slotEdit() : CQReportDefinitionSelect
• slotEditExpression() : CQOptimizationWidget
• slotEditorDeleted() : CQComboDelegate , CQPushButtonDelegate
• slotEditSettings() : CQAnimationWindow
• slotEffectAdded() : CQAnimationSettingsEditor
• slotEffectRemoved() : CQAnimationSettingsEditor
• slotExecutable() : CQTaskHeaderWidget
• slotExpandModel() : CopasiUI3Window
• slotExperimentAdd() : CQExperimentData
• slotExperimentChanged() : CQExperimentData , CQFittingItemWidget
• slotExperimentData() : CQFittingWidget
• slotExperimentDelete() : CQExperimentData
• slotExperiments() : CQFittingItemWidget
• slotExpertCheckBoxToggled() : CCopasiPlotSelectionDialog , CPlotSelectionDialog
• slotExportImage() : CQAnimationWindow
• slotExportMathModel() : CopasiUI3Window
• slotExportMathModelFinished() : CopasiUI3Window
• slotExportSBML() : CopasiUI3Window
• slotExportSBMLFinished() : CopasiUI3Window
• slotExportSBMLToStringFinished() : CopasiUI3Window
• slotExpressionValid() : CQCompartment , CQModelValue , CQOptimizationWidget , CQSpeciesDetail
• slotExprimentType() : CQExperimentData
• slotFcnDescriptionChanged() : FunctionWidget1
• slotFileAdd() : CQExperimentData
• slotFileChanged() : CQExperimentData
• slotFileDelete() : CQExperimentData
• slotFileExamplesCopasiFiles() : CopasiUI3Window
• slotFileExamplesSBMLFiles() : CopasiUI3Window
• slotFileOpen() : CopasiUI3Window
• slotFileOpenFinished() : CopasiUI3Window
• slotFilePrint() : CopasiUI3Window
• slotFileSave() : CopasiUI3Window
• slotFileSaveAs() : CopasiUI3Window
• slotFileSaveFinished() : CopasiUI3Window
• slotFilterChanged() : CQCompartmentsWidget , CQEFMListWidget , CQEventsWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotFinishItem() : CProgressBar
• slotFinishThread() : TaskWidget
• slotFirst() : CQExperimentData
• slotFitOnScreen() : CQLayoutView
• slotFitToScreen() : CQLayoutMainWindow , CQNewMainWindow
• slotFolderChanged() : ListViews
• slotFontSelection() : CopasiUI3Window
• slotForceUpdate() : MyLineEdit
• slotForward() : CQAnimationControls
• slotFrameButtonClicked() : CQScreenshotOptionsDialog
• slotFramesTextEdited() : CQScreenshotOptionsDialog
• slotFramesTextEditingFinished() : CQScreenshotOptionsDialog
• slotFrameworkChanged() : CopasiUI3Window
• slotFunctionDBLoad() : CopasiUI3Window
• slotFunctionDBSave() : CopasiUI3Window
• slotGoExpressionWidget() : CQExpressionMmlStackedWidget
• slotGoMmlWidget() : CQExpressionMmlStackedWidget
• slotGotoFunction() : ReactionsWidget1
• slotHeader() : CQExperimentData
• slotHeightChanged() : CQScreenshotOptionsDialog
• slotHValueChanged() : CQGLLayoutViewer , CQGLViewport
• slotImageHeightChanged() : CQScreenshotOptionsDialog
• slotImageWidthChanged() : CQScreenshotOptionsDialog
• slotImportSBML() : CopasiUI3Window
• slotImportSBMLFinished() : CopasiUI3Window
• slotImportSBMLFromStringFinished() : CopasiUI3Window
• slotInitialExpressionValid() : CQCompartment , CQModelValue , CQSpeciesDetail
• slotInitialTypeChanged() : CQCompartment , CQModelValue , CQSpeciesDetail
• slotInitialValueLostFocus() : CQSpeciesDetail
• slotIntervals() : CQTrajectoryWidget , CQTSSAWidget
• slotIntervalSize() : CQTrajectoryWidget , CQTSSAWidget
• slotItemChanged() : CQSelectionWizardPage
• slotItemDoubleClicked() : CQPreferenceDialog
• slotLast() : CQExperimentData
• slotLayoutChanged() : CQLayoutView , CQNewMainWindow
• slotLayoutFinished() : CQNewMainWindow
• slotLayoutSliderChanged() : CQSpringLayoutParameterWindow
• slotLayoutStateChanged() : CQAnimationWindow , CQNewMainWindow
• slotLineEditChanged() : ReactionsWidget1
• slotLoopActivated() : CQLayoutMainWindow
• slotLostFocus() : MyLineEdit
• slotLowerEdit() : CQFittingItemWidget
• slotLowerLostFocus() : CQFittingItemWidget
• slotMetaboliteTableCurrentChanged() : CQCompartment
• slotMode() : CQExpandModelData
• slotModeChanged() : CQEffectDescriptionEdit
• slotModel() : CQStartValueReset
• slotModelObject() : CQExperimentData
• slotModelObjectDelayed() : CQExperimentData
• slotMoveDown() : CQTableView
• slotNameLostFocus() : CQSpeciesDetail
• slotNew() : CQFittingItemWidget
• slotNewFunction() : ReactionsWidget1
• slotNotify() : CQBrowserPaneDM , ListViews , Worker
• slotObjectBrowserDialogWasClosed() : CopasiUI3Window
• slotOK() : CQExpandModelData , CQExperimentData
• slotOKButtonClicked() : CCopasiPlotSelectionDialog , CPlotSelectionDialog
• slotOpenEditor() : CQParameterOverviewWidget
• slotOpenRecentFile() : CopasiUI3Window
• slotOpenRecentSBMLFile() : CopasiUI3Window
• slotOpenUrl() : CQNotes
• slotOutputConvergence() : CQCrossSectionTaskWidget
• slotOutputConvergenceTolerance() : CQCrossSectionTaskWidget
• slotOutputCrossings() : CQCrossSectionTaskWidget
• slotOutputCrossingsLimit() : CQCrossSectionTaskWidget
• slotOutputDelay() : CQCrossSectionTaskWidget , CQTrajectoryWidget
• slotOutputDelayTime() : CQCrossSectionTaskWidget
• slotPageChange() : CQFittingWidget , CQOptimizationWidget
• slotParamEdit() : CQFittingItemWidget
• slotParameterNumberChanged() : CQFittingWidget , CQOptimizationWidget
• slotParameterStatusChanged() : ReactionsWidget1
• slotParameterTableToggled() : CQLayoutMainWindow
• slotPlayerControlToggled() : CQLayoutMainWindow
• slotPreferences() : CopasiUI3Window
• slotProgressAll() : CProgressBar
• slotQuit() : CopasiUI3Window
• slotQuitFinished() : CopasiUI3Window
• slotRandom() : CQStartValueReset
• slotRandomizeLayout() : CQAnimationWindow
• slotRemoveButtonClicked() : CQSideCompoundWizardPage
• slotRenderInfoChanged() : CQNewMainWindow
• slotRenderInformationChanged() : CQLayoutView
• slotReset() : CQFittingItemWidget
• slotResetView() : CQLayoutMainWindow , CQNewMainWindow
• slotResetZoom() : CQLayoutView
• slotResolve() : CQParameterOverviewWidget
• slotReturnPressed() : MyLineEdit
• slotReversibilityChanged() : FunctionWidget1
• slotRevert() : CQExperimentData
• slotRevertCurve() : CQGLLayoutViewer
• slotRowSelectionChanged() : CQArrayAnnotationsWidget
• slotRunRandomizeLayout() : CQNewMainWindow
• slotRunSpringLayout() : CQNewMainWindow
• slotSave() : CLNAResultSubwidget , CMCAResultSubwidget , CQDifferentialEquations , CQEFMResultWidget , CQFittingResult , CQMoietiesTaskResult , CQOptimizationResult , CQSteadyStateResult , CQTimeSeriesWidget
• slotSaveData() : PlotWindow
• slotSaveExpression() : CQExpressionMmlStackedWidget
• slotSaveToFile() : CQLayoutView
• slotScaled() : CLNAResultSubwidget , CMCAResultSubwidget
• slotScaleEndChanged() : CQEffectDescriptionEdit
• slotScaleModeChanged() : CQAnimationSettingsEditor
• slotScaleStartChanged() : CQEffectDescriptionEdit
• slotScreenshot() : CQNewMainWindow
• slotSelect() : DefaultPlotDialog
• slotSelectAll() : PlotWindow
• slotSelectColorEnd() : CQEffectDescriptionEdit
• slotSelectColorStart() : CQEffectDescriptionEdit
• slotSelectionChanged() : CQAnimationSettingsEditor , CQCompartmentsWidget , CQEventsWidget , CQFittingItemWidget , CQFunctionsWidget , CQGlobalQuantitiesWidget , CQLayoutsWidget , CQParameterSetsWidget , CQPlotsWidget , CQReactionsWidget , CQReportsWidget , CQSpeciesWidget
• slotSelectObject() : CQEffectDescriptionEdit , CQEventWidget1 , CQExpressionWidget
• slotSeparator() : CQExperimentData
• slotSetName() : CProgressBar
• slotShowLayout() : CQLayoutsWidget
• slotShowObjectBrowserDialog() : CopasiUI3Window
• slotShowSliders() : CopasiUI3Window
• slotShowStep() : CQAnimationControls , CQAnimationWindow
• slotSideCompoundSelectionChanged() : CQSideCompoundWizardPage
• slotSingleClick() : CQTableView
• slotSingleCurveSelected() : CQGLLayoutViewer , CQNewMainWindow
• slotSolution() : CQStartValueReset
• slotSort() : ListViews
• slotSpeciesSelectionChanged() : CQSideCompoundWizardPage
• slotStartLostFocus() : CQFittingItemWidget
• slotSteadyStateChecked() : CQLNAWidget , CQMCAWidget
• slotStepBack() : CQAnimationControls
• slotStepForward() : CQAnimationControls
• slotStop() : CQAnimationControls
• slotStopClicked() : CQNewMainWindow
• slotStopLayout() : CQAnimationWindow
• slotSubtaskChanged() : CQOptimizationWidget
• slotSwitchAnimation() : CQAnimationWindow
• slotSwitchToReaction() : CQSpeciesDetail
• slotTableChanged() : CQTSSAResultSubWidget , ReactionsWidget1
• slotTableValueChanged() : FunctionWidget1
• slotTextChanged() : CQExpressionWidget , MyLineEdit
• slotTimeAndStepChanged() : CQTSSAResultSubWidget
• slotToggleAll() : DefaultPlotDialog
• slotToggleMode() : CQNotes
• slotTogglePlayPause() : CQAnimationControls
• slotToolbarToggled() : CQLayoutMainWindow
• slotTutorialWizard() : CopasiUI3Window
• slotTypeChanged() : CQCompartment , CQExperimentData , CQModelValue , CQSpeciesDetail
• slotUncheckAllClicked() : CQCurrentValueTable
• slotUp() : CQFittingItemWidget , CScanContainerWidget , CUpDownSubwidget
• slotUpdate() : CQTaskHeaderWidget
• slotUpdateConvergence() : CQCrossSectionTaskWidget
• slotUpdateConvergenceTolerance() : CQCrossSectionTaskWidget
• slotUpdateCrossings() : CQCrossSectionTaskWidget
• slotUpdateCrossingsLimit() : CQCrossSectionTaskWidget
• slotUpdateInitialState() : CopasiUI3Window
• slotUpdateMIRIAM() : CopasiUI3Window
• slotUpdateMIRIAMFinished() : CopasiUI3Window
• slotUpdateModel() : CQFittingResult , CQOptimizationResult , CQSteadyStateResult
• slotUpdateScrollBar() : CQBrowserPane
• slotUpdateTable() : CQExperimentData
• slotUpdateTime() : CQCrossSectionTaskWidget
• slotUpdateWidget() : CQDifferentialEquations
• slotUpperEdit() : CQFittingItemWidget
• slotUpperLostFocus() : CQFittingItemWidget
• slotValidateXML() : CQNotes
• slotValueRate() : CQCrossSectionTaskWidget
• slotValueTableToggled() : CQLayoutMainWindow
• slotViewLicense() : CQSplashWidget
• slotVValueChanged() : CQGLLayoutViewer , CQGLViewport
• slotWeightMethod() : CQExperimentData
• slotWidthChanged() : CQScreenshotOptionsDialog
• slotXChanged() : CQScreenshotOptionsDialog
• slotYChanged() : CQScreenshotOptionsDialog
• slotZoomChanged() : CQNewMainWindow
• slotZoomIn() : CQLayoutView
• slotZoomMenuItemActivated() : CQNewMainWindow
• slotZoomOut() : CQLayoutView , PlotWindow
• SLVS() : SLVS
• SLVSFunctor() : SLVSFunctor< CType >
• smadd() : CCSPMethod
• sminverse() : CCSPMethod
• smmult() : CCSPMethod
• smnorm() : CCSPMethod
• smpRenameHandler : CCopasiObject
• smsubst() : CCSPMethod
• soap : ArrayOf_USCORExsd_USCOREstring , soap_dom_attribute , soap_dom_element
• soap_close_socket() : MiriamWebServicesSoapBindingProxy
• soap_default() : ArrayOf_USCORExsd_USCOREstring
• soap_endpoint : MiriamWebServicesSoapBindingProxy
• SOAP_ENV__Code : SOAP_ENV__Fault
• SOAP_ENV__Detail : SOAP_ENV__Fault
• SOAP_ENV__Node : SOAP_ENV__Fault
• SOAP_ENV__Reason : SOAP_ENV__Fault
• SOAP_ENV__Role : SOAP_ENV__Fault
• SOAP_ENV__Subcode : SOAP_ENV__Code
• SOAP_ENV__Text : SOAP_ENV__Reason
• SOAP_ENV__Value : SOAP_ENV__Code
• soap_fault() : MiriamWebServicesSoapBindingProxy
• soap_fault_detail() : MiriamWebServicesSoapBindingProxy
• soap_fault_string() : MiriamWebServicesSoapBindingProxy
• soap_get() : ArrayOf_USCORExsd_USCOREstring
• soap_in() : ArrayOf_USCORExsd_USCOREstring
• soap_noheader() : MiriamWebServicesSoapBindingProxy
• soap_out() : ArrayOf_USCORExsd_USCOREstring
• soap_print_fault() : MiriamWebServicesSoapBindingProxy
• soap_put() : ArrayOf_USCORExsd_USCOREstring
• soap_serialize() : ArrayOf_USCORExsd_USCOREstring
• soap_sprint_fault() : MiriamWebServicesSoapBindingProxy
• soap_stream_fault() : MiriamWebServicesSoapBindingProxy
• soap_type() : ArrayOf_USCORExsd_USCOREstring
• socket : soap
• socket_flags : soap
• SOLUTION : CQStartValueReset
• solveJacobianXeqB() : CNewtonMethod
• sort() : CExperimentSet
• sortList() : ObjectList
• sortListInsert() : ObjectList
• sortRefSet() : COptMethodSS
• source : CCopasiSpringLayout::CoordinateRelation
• Source : CRDFGraphConverter::sChange
• source_cf : copasi::COptionParser
• source_cl : copasi::COptionParser
• SourceParameter : CCopasiXMLParser::CallParameterElement , CCopasiXMLParser::SourceParameterElement
• SourceParameterElement() : CCopasiXMLParser::SourceParameterElement
• SourceParameterKeys : SCopasiXMLParserCommon
• spacer : ObjectBrowserDialog , ObjectBrowserWidget
• Species : CMath , CModelParameter
• SPECIES : CQCompartmentCopyOptions
• SPECIES_DEPTH : CQGLNetworkPainter
• SPECIES_FRAME_DEPTH : CQGLNetworkPainter
• SPECIES_SHADOW_DEPTH : CQGLNetworkPainter
• SpeciesAlias() : SpeciesAlias
• SpeciesAnnotation() : SpeciesAnnotation
• SpeciesIdentity() : SpeciesIdentity
• speciesMap : SBMLImporter
• SpeciesModification() : SpeciesModification
• speciesModificationTypeToEnum() : CCellDesignerImporter
• SPECIESREFERENCE_DEPTH : CQGLNetworkPainter
• SpeciesState() : SpeciesState
• speciesToReactionsMap : CTrajectoryMethodDsaLsodar::CPartition
• SpecificUpdateMethod() : SpecificUpdateMethod< CType, VType >
• splitBranch() : CEvaluationNode
• splitColumns() : CStepMatrix
• splitDisplayName() : CMetabNameInterface
• splitFunction() : CFunction
• splitPatterns() : CBitPatternTreeNode
• splitProduct() : CNormalTranslation
• splitString() : CCellDesignerImporter
• splitStrings() : SEDMLUtils
• splitSum() : CNormalTranslation
• SPREADMETHOD : CLGradientBase
• SQRT : CEvaluationNodeFunction , CNormalFunction
• SRES : CCopasiMethod
• ssl : soap
• ssl_flags : soap
• stabilityAnalysis() : CEigen
• StackElement : CMath::CAllocationStack , CMath::CVariableStack
• standard : CCopasiXMLInterface
• start() : CCopasiTimer , CCopasiXMLParser::AdditionalGOElement , CCopasiXMLParser::AssignmentElement , CCopasiXMLParser::BodyElement , CCopasiXMLParser::BoundingBoxElement , CCopasiXMLParser::CallParameterElement , CCopasiXMLParser::ChannelSpecElement , CCopasiXMLParser::CharacterDataElement , CCopasiXMLParser::ColorDefinitionElement , CCopasiXMLParser::CommentElement , CCopasiXMLParser::CompartmentElement , CCopasiXMLParser::CompartmentGlyphElement , CCopasiXMLParser::ComplexElement , CCopasiXMLParser::ConstantElement , CCopasiXMLParser::COPASIElement
• Start : CCopasiXMLParser::CurveElement
• start() : CCopasiXMLParser::CurveElement , CCopasiXMLParser::CurveElementElement , CCopasiXMLParser::EllipseElement , CCopasiXMLParser::EventElement , CCopasiXMLParser::FooterElement , CCopasiXMLParser::FunctionElement , CCopasiXMLParser::GlobalRenderInformationElement , CCopasiXMLParser::GlobalStyleElement , CCopasiXMLParser::GradientStopElement , CCopasiXMLParser::GroupElement , CCopasiXMLParser::GUIElement , CCopasiXMLParser::HeaderElement , CCopasiXMLParser::ImageElement , CCopasiXMLParser::InitialStateElement , CCopasiXMLParser::KineticLawElement , CCopasiXMLParser::LayoutElement , CCopasiXMLParser::LinearGradientElement , CCopasiXMLParser::LineEndingElement , CCopasiXMLParser::ListOfAdditionalGOsElement , CCopasiXMLParser::ListOfAssignmentsElement , CCopasiXMLParser::ListOfCallParametersElement , CCopasiXMLParser::ListOfChannelsElement , CCopasiXMLParser::ListOfColorDefinitionsElement , CCopasiXMLParser::ListOfCompartmentGlyphsElement , CCopasiXMLParser::ListOfCompartmentsElement , CCopasiXMLParser::ListOfConstantsElement , CCopasiXMLParser::ListOfCurveElementsElement , CCopasiXMLParser::ListOfEventsElement , CCopasiXMLParser::ListOfFunctionsElement , CCopasiXMLParser::ListOfGlobalRenderInformationElement , CCopasiXMLParser::ListOfGlobalStylesElement , CCopasiXMLParser::ListOfGradientDefinitionsElement , CCopasiXMLParser::ListOfLayoutsElement , CCopasiXMLParser::ListOfLineEndingsElement , CCopasiXMLParser::ListOfLocalRenderInformationElement , CCopasiXMLParser::ListOfLocalStylesElement , CCopasiXMLParser::ListOfMetabGlyphsElement , CCopasiXMLParser::ListOfMetaboliteReferenceGlyphsElement , CCopasiXMLParser::ListOfMetabolitesElement , CCopasiXMLParser::ListOfModelParameterSetsElement , CCopasiXMLParser::ListOfModelValuesElement , CCopasiXMLParser::ListOfModifiersElement , CCopasiXMLParser::ListOfParameterDescriptionsElement , CCopasiXMLParser::ListOfPlotItemsElement , CCopasiXMLParser::ListOfPlotsElement , CCopasiXMLParser::ListOfProductsElement , CCopasiXMLParser::ListOfReactionGlyphsElement , CCopasiXMLParser::ListOfReactionsElement , CCopasiXMLParser::ListOfReportsElement , CCopasiXMLParser::ListOfSlidersElement , CCopasiXMLParser::ListOfSubstratesElement , CCopasiXMLParser::ListOfTasksElement , CCopasiXMLParser::ListOfTextGlyphsElement , CCopasiXMLParser::ListOfUnsupportedAnnotationsElement , CCopasiXMLParser::LocalRenderInformationElement , CCopasiXMLParser::LocalStyleElement , CCopasiXMLParser::MathMLElement , CCopasiXMLParser::MetaboliteElement , CCopasiXMLParser::MetaboliteGlyphElement , CCopasiXMLParser::MetaboliteReferenceGlyphElement , CCopasiXMLParser::MethodElement , CCopasiXMLParser::MiriamAnnotationElement , CCopasiXMLParser::ModelElement , CCopasiXMLParser::ModelParameterElement , CCopasiXMLParser::ModelParameterGroupElement , CCopasiXMLParser::ModelParameterSetElement , CCopasiXMLParser::ModelValueElement , CCopasiXMLParser::ModifierElement , CCopasiXMLParser::ObjectElement , CCopasiXMLParser::ParameterDescriptionElement , CCopasiXMLParser::ParameterElement , CCopasiXMLParser::ParameterGroupElement , CCopasiXMLParser::ParameterTextElement , CCopasiXMLParser::PlotItemElement , CCopasiXMLParser::PlotSpecificationElement , CCopasiXMLParser::PolygonElement , CCopasiXMLParser::ProductElement , CCopasiXMLParser::RadialGradientElement , CCopasiXMLParser::ReactionElement , CCopasiXMLParser::ReactionGlyphElement , CCopasiXMLParser::RectangleElement , CCopasiXMLParser::RenderCurveElement , CCopasiXMLParser::ReportElement , CCopasiXMLParser::ReportInstanceElement , CCopasiXMLParser::SBMLMapElement , CCopasiXMLParser::SBMLReferenceElement , CCopasiXMLParser::SliderElement , CCopasiXMLParser::SourceParameterElement , CCopasiXMLParser::StateTemplateElement , CCopasiXMLParser::StateTemplateVariableElement , CCopasiXMLParser::SubstrateElement , CCopasiXMLParser::TableElement , CCopasiXMLParser::TaskElement , CCopasiXMLParser::TextElement , CCopasiXMLParser::TextGlyphElement , CCopasiXMLParser::UnknownElement , CCopasiXMLParser::UnsupportedAnnotationElement , CCSPMethod , CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45 , CILDMMethod , CILDMModifiedMethod , CLsodaMethod , CLyapMethod , CLyapWolfMethod
• Start : CMathDependencyNodeIterator
• start() : CMiaseParser
• Start : CNodeIteratorMode
• start() : CStochDirectMethod , CStochMethod , CTauLeapMethod , CTrajAdaptiveSA , CTrajectoryMethod , CTrajectoryMethodDsaLsodar , CTSSAMethod , CXMLElementHandler< CType, CCommon > , ListOfModelParameterSetsElement , ListOfUnsupportedAnnotationsElement , ModelParameterElement , ModelParameterGroupElement , ModelParameterSetElement , soap_mime , UnsupportedAnnotationElement
• startAnimation() : CQLayoutMainWindow
• startAutomaticParameterCalculation() : CColorScale , CColorScaleAverage , CColorScaleBiLog , CColorScaleSimple
• startCdataSectionHandler() : CExpatTemplate< CType >
• startDoctypeDeclHandler() : CExpatTemplate< CType >
• startDocument() : CQNotesContentHandler , CStructureParser
• startElement() : CMiaseParser , CQNotesContentHandler , CStructureParser
• startElementHandler() : CExpatTemplate< CType >
• startNamespaceDeclHandler() : CExpatTemplate< CType >
• startSaveElement() : CCopasiXMLInterface
• StartWith() : CopasiFileDialog
• STATE : CCrossSectionTask
• state() : CMathDependencyNodeIterator
• State : CMathDependencyNodeIterator , CNodeIteratorMode
• STATE : CQGLLayoutPainter
• State : CReport
• STATE : ListViews
• state : soap
• state_ : copasi::COptionParser
• STATE_ANNOTATION : CMiaseParser
• state_consume : copasi::COptionParser
• STATE_DRAG : CQGLLayoutPainter
• STATE_LAST : CMiaseParser
• STATE_LIST_OF_CHANGES : CMiaseParser
• STATE_LIST_OF_MEASUREMENT : CMiaseParser
• STATE_LIST_OF_MODELS : CMiaseParser
• STATE_LIST_OF_OUTPUTS : CMiaseParser
• STATE_LIST_OF_SIMULATIONS : CMiaseParser
• STATE_LIST_OF_TASKS : CMiaseParser
• STATE_MIASE : CMiaseParser
• STATE_MODEL : CMiaseParser
• STATE_NORMAL : CQGLLayoutPainter
• STATE_NOTES : CMiaseParser
• state_option : copasi::COptionParser
• STATE_OUTPUT : CMiaseParser
• STATE_READY_TO_READ : CMiaseParser
• STATE_SED : CMiaseParser
• STATE_SELECTION : CQGLLayoutPainter
• STATE_STOPPED : CMiaseParser
• STATE_TASK : CMiaseParser
• state_value : copasi::COptionParser
• stateChanged() : CLsodaMethod , CQValidatorFunction , CTrajectoryMethod , CTrajectoryMethodDsaLsodar
• States : CMiaseParser
• StateSubwidget() : StateSubwidget
• StateTemplate : CCopasiXMLParser::ModelElement , CCopasiXMLParser::StateTemplateElement
• StateTemplateElement() : CCopasiXMLParser::StateTemplateElement
• StateTemplateVariable : CCopasiXMLParser::StateTemplateElement , CCopasiXMLParser::StateTemplateVariableElement
• StateTemplateVariableElement() : CCopasiXMLParser::StateTemplateVariableElement
• StateVariableList : SCopasiXMLParserCommon
• stateWidget : ListViews
• StaticString : CCopasiObject
• Statistics : CCopasiMethod
• Status : CFunctionAnalyzer::CValue , CModelEntity , CTrajectoryMethod
• status : soap
• status_message() : CQGLLayoutPainter
• StatusName : CModelEntity
• StdException() : StdException
• steadyState : CCopasiTask
• SteadyState : CSensProblem
• steadystateWidget : ListViews
• SteadyStateWidget() : SteadyStateWidget
• SteepestDescent : CCopasiMethod
• step() : CCSPMethod , CHybridMethod , CHybridMethodLSODA , CHybridMethodODE45 , CILDMMethod , CILDMModifiedMethod , CLayoutEngine , CLsodaMethod , CLyapMethod , CLyapWolfMethod , CScanItem , CScanItemLinear , CScanItemRandom , CScanItemRepeat , CStochDirectMethod , CStochMethod , CTauLeapMethod , CTrajAdaptiveSA , CTrajectoryMethod , CTrajectoryMethodDsaLsodar , CTSSAMethod
• step_backward() : CQAnimationControls , CQPlayerControlWidget
• step_forward() : CQAnimationControls , CQPlayerControlWidget
• stepBackwardAnimation() : CQLayoutMainWindow
• stepChanged() : CQGLNetworkPainter
• stepEdit_returnPressed() : CQParaPanel
• stepForwardAnimation() : CQLayoutMainWindow
• stepIntegration() : CLayoutEngine
• steps : BezierCurve
• stepShown : CQGLNetworkPainter
• stepSuccesful : CNewtonMethod
• stochastic : CCopasiMethod
• Stochastic : CMath
• stochastic : CModel
• StoichiometricCoefficients : CMath
• sToIs : CQIconResource
• stop() : CQAnimationControls , CQIconResource , CQPlayerControlWidget
• stopAnimation() : CQLayoutMainWindow
• stopLayout() : CQLayoutThread
• storeChanges() : CQPlotSubwidget
• storeExtendedTimeSeriesData() : CExperiment
• storeMax() : CSimSummaryInfo
• storeMin() : CSimSummaryInfo
• storeValue() : CScanItem
• STREAM : CCopasiTask
• stress_test() : stress_test
• STRING : CCopasiParameter
• string : soap_code_map
• StringBoundMap : CLayoutState
• StringCurveMap : CLayoutState
• STRINGS : CArrayAnnotation
• STRUCTURE : CEvaluationNode
• STYLE_ITALIC : CLText
• STYLE_NORMAL : CLText
• STYLE_UNSET : CLText
• SUBSTRATE : CChemEq
• Substrate : CCopasiXMLParser::ListOfSubstratesElement , CCopasiXMLParser::SubstrateElement
• SUBSTRATE : CFunctionParameter , CLMetabReferenceGlyph
• SubstrateElement() : CCopasiXMLParser::SubstrateElement
• SubTaskName : CSensProblem
• SubTaskType : CSensProblem
• subtraction_indices : summ_match
• SubType : CCopasiMethod
• subType() : CEvaluationNode
• SubType : CEvaluationNodeCall , CEvaluationNodeChoice , CEvaluationNodeConstant , CEvaluationNodeDelay , CEvaluationNodeFunction , CEvaluationNodeLogical , CEvaluationNodeNumber , CEvaluationNodeObject , CEvaluationNodeOperator , CEvaluationNodeStructure , CEvaluationNodeVariable , CEvaluationNodeVector , CEvaluationNodeWhiteSpace
• SubTypeName : CCopasiMethod
• success() : CQTaskThread
• suffix() : CDirEntry
• suitableForStochasticSimulation() : CModel
• suitableFunctions() : CFunctionDB
• sumColumns : CStructureParser
• summ_match() : summ_match
• sumOfExponents() : CLyapTask
• sumOfSquares() : CExperiment
• sumOfSquaresStore() : CExperiment
• surface : CPlotItem
• suspendAutoSave() : CopasiUI3Window
• swap() : CCopasiParameterGroup , CCopasiVector< T > , CFunctionParameters , CGA , COptMethodEP2 , COptMethodEP , COptMethodGA , COptMethodGASR , COptMethodHGASA , COptMethodSRES , ObjectBrowserWidget
• swapNegativeNumbers() : CNormalTranslation
• swapNodes() : CIndexedPriorityQueue
• swapOptItem() : COptProblem
• switch_streams() : CChemEqParser , CEvaluationLexer , FlexLexer , yyFlexLexer
• switchMode() : CQNewMainWindow
• switchToBarChart() : CQArrayAnnotationsWidget
• switchToOtherWidget() : ListViews
• switchToTable() : CQArrayAnnotationsWidget
• sylvester() : CTSSAMethod
• SymbolicExponent() : CSBMLunit::SymbolicExponent
• SYMBOLS : CNormalGeneralPower
• sync() : CExperimentFileInfo , CSlider , CTrajectoryProblem , CTSSAProblem
• syncExperiments() : CQExperimentData
• syscall() : CRandom