COPASI API
4.16.103
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#include <CCrossSectionProblem.h>
Public Member Functions | |
CCrossSectionProblem (const CCopasiContainer *pParent=NULL) | |
CCrossSectionProblem (const CCrossSectionProblem &src, const CCopasiContainer *pParent=NULL) | |
const C_FLOAT64 & | getConvergenceOutTolerance () const |
const C_FLOAT64 & | getConvergenceTolerance () const |
const unsigned C_INT32 & | getCrossingsLimit () const |
bool | getFlagLimitConvergence () const |
bool | getFlagLimitCrossings () const |
bool | getFlagLimitOutConvergence () const |
bool | getFlagLimitOutCrossings () const |
bool | getFlagLimitOutTime () const |
const unsigned C_INT32 & | getOutCrossingsLimit () const |
const std::string & | getSingleObjectCN () const |
const C_FLOAT64 & | getThreshold () const |
const C_FLOAT64 & | getTimeLimit () const |
bool | isPositiveDirection () const |
virtual void | print (std::ostream *ostream) const |
void | setConvergenceOutTolerance (const C_FLOAT64 &convergenceTolerance) |
void | setConvergenceTolerance (const C_FLOAT64 &convergenceTolerance) |
void | setCrossingsLimit (const unsigned C_INT32 &crossingLimit) |
void | setFlagLimitConvergence (bool flagLimitConvergence) |
void | setFlagLimitCrossings (bool flagLimitCrossing) |
void | setFlagLimitOutConvergence (bool flagLimitConvergence) |
void | setFlagLimitOutCrossings (bool flagLimitCrossing) |
void | setFlagLimitOutTime (bool flagLimitTime) |
void | setOutCrossingsLimit (const unsigned C_INT32 &crossingLimit) |
void | setPositiveDirection (bool isPositive) |
void | setSingleObjectCN (const std::string &cn) |
void | setSingleObjectCN (const CCopasiObject *pObject) |
void | setThreshold (const C_FLOAT64 &threshold) |
void | setTimeLimit (const C_FLOAT64 &timeLimit) |
virtual | ~CCrossSectionProblem () |
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CTrajectoryProblem (const CCopasiContainer *pParent=NULL) | |
CTrajectoryProblem (const CTrajectoryProblem &src, const CCopasiContainer *pParent=NULL) | |
virtual bool | elevateChildren () |
const bool & | getContinueSimultaneousEvents () const |
const C_FLOAT64 & | getDuration () const |
const bool & | getOutputEvent () const |
const C_FLOAT64 & | getOutputStartTime () const |
const unsigned C_INT32 & | getStepNumber () const |
const C_FLOAT64 & | getStepSize () const |
void | load (CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::NEXT) |
void | setContinueSimultaneousEvents (const bool &continueSimultaneousEvents) |
void | setDuration (const C_FLOAT64 &duration) |
void | setOutputEvent (const bool &outputEvent) |
void | setOutputStartTime (const C_FLOAT64 &endTime) |
void | setStepNumber (const unsigned C_INT32 &stepNumber) |
void | setStepSize (const C_FLOAT64 &stepSize) |
void | setTimeSeriesRequested (bool flag) |
bool | timeSeriesRequested () const |
~CTrajectoryProblem () | |
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CCopasiProblem (const CCopasiProblem &src, const CCopasiContainer *pParent=NULL) | |
CModel * | getModel () const |
const CCopasiTask::Type & | getType () const |
virtual bool | initialize () |
virtual void | printResult (std::ostream *ostream) const |
virtual bool | restore (const bool &updateModel) |
virtual bool | setCallBack (CProcessReport *pCallBack) |
virtual bool | setModel (CModel *pModel) |
virtual | ~CCopasiProblem () |
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bool | addGroup (const std::string &name) |
bool | addParameter (const CCopasiParameter ¶meter) |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type) |
template<class CType > | |
bool | addParameter (const std::string &name, const CCopasiParameter::Type type, const CType &value) |
void | addParameter (CCopasiParameter *pParameter) |
CCopasiParameterGroup * | assertGroup (const std::string &name) |
template<class CType > | |
CCopasiParameter * | assertParameter (const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) |
index_iterator | beginIndex () const |
name_iterator | beginName () const |
CCopasiParameterGroup (const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | |
CCopasiParameterGroup (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | |
void | clear () |
index_iterator | endIndex () const |
name_iterator | endName () const |
CCopasiParameterGroup * | getGroup (const std::string &name) |
const CCopasiParameterGroup * | getGroup (const std::string &name) const |
CCopasiParameterGroup * | getGroup (const size_t &index) |
const CCopasiParameterGroup * | getGroup (const size_t &index) const |
size_t | getIndex (const std::string &name) const |
std::string | getKey (const std::string &name) const |
std::string | getKey (const size_t &index) const |
virtual const std::string & | getName (const size_t &index) const |
virtual const CObjectInterface * | getObject (const CCopasiObjectName &cn) const |
CCopasiParameter * | getParameter (const std::string &name) |
const CCopasiParameter * | getParameter (const std::string &name) const |
CCopasiParameter * | getParameter (const size_t &index) |
const CCopasiParameter * | getParameter (const size_t &index) const |
CCopasiParameter::Type | getType (const std::string &name) const |
CCopasiParameter::Type | getType (const size_t &index) const |
std::string | getUniqueParameterName (const CCopasiParameter *pParameter) const |
const CCopasiParameter::Value & | getValue (const std::string &name) const |
const CCopasiParameter::Value & | getValue (const size_t &index) const |
CCopasiParameter::Value & | getValue (const std::string &name) |
CCopasiParameter::Value & | getValue (const size_t &index) |
CCopasiParameterGroup & | operator= (const CCopasiParameterGroup &rhs) |
bool | removeParameter (const std::string &name) |
bool | removeParameter (const size_t &index) |
template<class CType > | |
bool | setValue (const std::string &name, const CType &value) |
template<class CType > | |
bool | setValue (const size_t &index, const CType &value) |
size_t | size () const |
bool | swap (const size_t &iFrom, const size_t &iTo) |
bool | swap (index_iterator &from, index_iterator &to) |
virtual | ~CCopasiParameterGroup () |
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CCopasiParameter (const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | |
CCopasiParameter (const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | |
virtual CCopasiObjectName | getCN () const |
virtual const std::string & | getKey () const |
virtual std::string | getObjectDisplayName (bool regular=true, bool richtext=false) const |
const CCopasiParameter::Type & | getType () const |
const Value & | getValue () const |
Value & | getValue () |
virtual void * | getValuePointer () const |
CCopasiObject * | getValueReference () const |
bool | isValidValue (const C_FLOAT64 &value) const |
bool | isValidValue (const C_INT32 &value) const |
bool | isValidValue (const unsigned C_INT32 &value) const |
bool | isValidValue (const bool &value) const |
bool | isValidValue (const std::string &value) const |
bool | isValidValue (const CCopasiObjectName &value) const |
bool | isValidValue (const std::vector< CCopasiParameter * > &value) const |
CCopasiParameter & | operator= (const CCopasiParameter &rhs) |
template<class CType > | |
bool | setValue (const CType &value) |
bool | setValue (const std::vector< CCopasiParameter * > &value) |
virtual | ~CCopasiParameter () |
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virtual bool | add (CCopasiObject *pObject, const bool &adopt=true) |
CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | |
CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | |
virtual std::string | getChildObjectUnits (const CCopasiObject *pObject) const |
virtual const objectMap & | getObjects () const |
virtual std::string | getUnits () const |
virtual const CCopasiObject * | getValueObject () const |
virtual bool | remove (CCopasiObject *pObject) |
virtual | ~CCopasiContainer () |
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void | addDirectDependency (const CCopasiObject *pObject) |
CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | |
void | clearDirectDependencies () |
void | clearRefresh () |
bool | dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const |
void | getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const |
virtual const DataObjectSet & | getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const |
CCopasiContainer * | getObjectAncestor (const std::string &type) const |
CCopasiDataModel * | getObjectDataModel () |
const CCopasiDataModel * | getObjectDataModel () const |
const std::string & | getObjectName () const |
CCopasiContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const |
virtual Refresh * | getRefresh () const |
UpdateMethod * | getUpdateMethod () const |
bool | hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const |
bool | hasUpdateMethod () const |
bool | isArray () const |
bool | isContainer () const |
bool | isDataModel () const |
bool | isMatrix () const |
bool | isNameVector () const |
bool | isNonUniqueName () const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const |
bool | isReference () const |
bool | isRoot () const |
bool | isSeparator () const |
bool | isStaticString () const |
bool | isValueBool () const |
bool | isValueDbl () const |
bool | isValueInt () const |
bool | isValueInt64 () const |
bool | isValueString () const |
bool | isVector () const |
virtual bool | mustBeDeleted (const DataObjectSet &deletedObjects) const |
void | removeDirectDependency (const CCopasiObject *pObject) |
void | setDirectDependencies (const DataObjectSet &directDependencies) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CCopasiContainer *pParent) |
void | setObjectValue (const C_FLOAT64 &value) |
void | setObjectValue (const C_INT32 &value) |
void | setObjectValue (const bool &value) |
template<class CType > | |
void | setRefresh (CType *pType, void(CType::*method)(void)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const bool &)) |
virtual | ~CCopasiObject () |
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CObjectInterface () | |
virtual | ~CObjectInterface () |
Private Member Functions | |
unsigned C_INT32 | getStepNumber () const |
C_FLOAT64 | getStepSize () const |
void | initializeParameter () |
void | initObjects () |
Private Attributes | |
C_FLOAT64 * | mpConvergenceOutTolerance |
C_FLOAT64 * | mpConvergenceTolerance |
unsigned C_INT32 * | mpCrossingsLimit |
bool * | mpFlagLimitConvergence |
bool * | mpFlagLimitCrossings |
bool * | mpFlagLimitOutConvergence |
bool * | mpFlagLimitOutCrossings |
bool * | mpFlagLimitOutTime |
bool * | mpFlagPositiveDirection |
unsigned C_INT32 * | mpOutCrossingsLimit |
C_FLOAT64 * | mpThreshold |
std::string * | mpTriggerExpression |
std::string * | mSingleObjectCN |
Friends | |
std::ostream & | operator<< (std::ostream &os, const CCrossSectionProblem &o) |
Additional Inherited Members | |
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typedef parameterGroup::iterator | index_iterator |
typedef CCopasiContainer::objectMap::iterator | name_iterator |
typedef std::vector < CCopasiParameter * > | parameterGroup |
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enum | Type { DOUBLE = 0, UDOUBLE, INT, UINT, BOOL, GROUP, STRING, CN, KEY, FILE, EXPRESSION, INVALID } |
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typedef std::multimap < std::string, CCopasiObject * > | objectMap |
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typedef std::set< const CCopasiObject * > | DataObjectSet |
typedef std::vector< Refresh * > | DataUpdateSequence |
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typedef std::set< const CObjectInterface * > | ObjectSet |
typedef std::vector < CObjectInterface * > | UpdateSequence |
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static std::vector< Refresh * > | buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) |
static void | setRenameHandler (CRenameHandler *rh) |
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static const std::string | TypeName [] |
static const char * | XMLType [] |
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static const std::vector < CCopasiContainer * > | EmptyList |
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enum | Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 } |
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CCopasiProblem (const CCopasiTask::Type &type, const CCopasiContainer *pParent=NULL) | |
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CCopasiParameterGroup () | |
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template<class CType > | |
CCopasiObject * | addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
void | initObjects () |
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CCopasiObject () | |
CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | |
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bool * | mpContinueSimultaneousEvents |
C_FLOAT64 * | mpDuration |
bool * | mpOutputEvent |
C_FLOAT64 * | mpOutputStartTime |
unsigned C_INT32 * | mpStepNumber |
C_FLOAT64 * | mpStepSize |
bool * | mpTimeSeriesRequested |
bool | mStepNumberSetLast |
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CProcessReport * | mpCallBack |
CModel * | mpModel |
CReport * | mpReport |
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std::string | mKey |
CCopasiObject * | mpValueReference |
size_t | mSize |
Value | mValue |
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objectMap | mObjects |
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static CRenameHandler * | smpRenameHandler = NULL |
Definition at line 11 of file CCrossSectionProblem.h.
CCrossSectionProblem::CCrossSectionProblem | ( | const CCopasiContainer * | pParent = NULL | ) |
Default constructor.
const | CCopasiContainer * pParent (default: NULL) |
Definition at line 9 of file CCrossSectionProblem.cpp.
References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().
CCrossSectionProblem::CCrossSectionProblem | ( | const CCrossSectionProblem & | src, |
const CCopasiContainer * | pParent = NULL |
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Copy constructor.
const CCrossSectionProblem & | src CCopasiContainer * pParent (default: NULL) |
Definition at line 29 of file CCrossSectionProblem.cpp.
References CONSTRUCTOR_TRACE, initializeParameter(), and initObjects().
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const C_FLOAT64 & CCrossSectionProblem::getConvergenceOutTolerance | ( | ) | const |
Function to get mpConvergenceOutTolerance
Definition at line 193 of file CCrossSectionProblem.cpp.
References mpConvergenceOutTolerance.
Referenced by CQCrossSectionTaskWidget::loadTask(), and CQCrossSectionTaskWidget::updateValues().
const C_FLOAT64 & CCrossSectionProblem::getConvergenceTolerance | ( | ) | const |
Function to get mpConvergenceTolerance
Definition at line 173 of file CCrossSectionProblem.cpp.
References mpConvergenceTolerance.
Referenced by CQCrossSectionTaskWidget::loadTask(), and CQCrossSectionTaskWidget::updateValues().
const unsigned C_INT32 & CCrossSectionProblem::getCrossingsLimit | ( | ) | const |
Function to get mpCrossingsLimit
Definition at line 94 of file CCrossSectionProblem.cpp.
References mpCrossingsLimit.
Referenced by CQCrossSectionTaskWidget::loadTask(), CCrossSectionTask::process(), and CQCrossSectionTaskWidget::updateValues().
bool CCrossSectionProblem::getFlagLimitConvergence | ( | ) | const |
Function to get mpFlagLimitConvergence
Definition at line 168 of file CCrossSectionProblem.cpp.
References mpFlagLimitConvergence.
Referenced by CCrossSectionTask::eventCallBack(), and CQCrossSectionTaskWidget::loadTask().
bool CCrossSectionProblem::getFlagLimitCrossings | ( | ) | const |
Function to get mpFlagLimitCrossings
Definition at line 91 of file CCrossSectionProblem.cpp.
References mpFlagLimitCrossings.
Referenced by CQCrossSectionTaskWidget::loadTask(), and CCrossSectionTask::process().
bool CCrossSectionProblem::getFlagLimitOutConvergence | ( | ) | const |
Function to get mpFlagLimitOutConvergence
Definition at line 188 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutConvergence.
Referenced by CCrossSectionTask::eventCallBack(), and CQCrossSectionTaskWidget::loadTask().
bool CCrossSectionProblem::getFlagLimitOutCrossings | ( | ) | const |
Function to get mpFlagLimitOutCrossings
Definition at line 97 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutCrossings.
Referenced by CCrossSectionTask::eventCallBack(), CQCrossSectionTaskWidget::loadTask(), and CCrossSectionTask::process().
bool CCrossSectionProblem::getFlagLimitOutTime | ( | ) | const |
Function to get mpFlagLimitOutTime
Definition at line 103 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutTime.
Referenced by CCrossSectionTask::eventCallBack(), CQCrossSectionTaskWidget::loadTask(), and CCrossSectionTask::process().
const unsigned C_INT32 & CCrossSectionProblem::getOutCrossingsLimit | ( | ) | const |
Function to get mpOutCrossingsLimit
Definition at line 100 of file CCrossSectionProblem.cpp.
References mpOutCrossingsLimit.
Referenced by CQCrossSectionTaskWidget::loadTask(), CCrossSectionTask::process(), and CQCrossSectionTaskWidget::updateValues().
const std::string & CCrossSectionProblem::getSingleObjectCN | ( | ) | const |
return the variable
Definition at line 139 of file CCrossSectionProblem.cpp.
References mSingleObjectCN.
Referenced by CCrossSectionTask::createEvent(), and CQCrossSectionTaskWidget::loadTask().
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Definition at line 174 of file CCrossSectionProblem.h.
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Definition at line 175 of file CCrossSectionProblem.h.
const C_FLOAT64 & CCrossSectionProblem::getThreshold | ( | ) | const |
Definition at line 151 of file CCrossSectionProblem.cpp.
References mpThreshold.
Referenced by CCrossSectionTask::createEvent(), CQCrossSectionTaskWidget::loadTask(), and CQCrossSectionTaskWidget::updateValues().
const C_FLOAT64 & CCrossSectionProblem::getTimeLimit | ( | ) | const |
Function to get mpTimeLimit
Definition at line 106 of file CCrossSectionProblem.cpp.
References CTrajectoryProblem::mpDuration.
Referenced by CQCrossSectionTaskWidget::loadTask(), and CQCrossSectionTaskWidget::updateValues().
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Initialize the parameters
Definition at line 50 of file CCrossSectionProblem.cpp.
References CCopasiParameterGroup::assertParameter(), CCopasiParameter::BOOL, C_FLOAT64, C_INT32, CCopasiParameter::CN, CCopasiParameter::DOUBLE, CCopasiParameter::EXPRESSION, CCopasiParameter::getValue(), mpConvergenceOutTolerance, mpConvergenceTolerance, mpCrossingsLimit, mpFlagLimitConvergence, mpFlagLimitCrossings, mpFlagLimitOutConvergence, mpFlagLimitOutCrossings, mpFlagLimitOutTime, mpFlagPositiveDirection, mpOutCrossingsLimit, mpThreshold, mpTriggerExpression, mSingleObjectCN, CCopasiParameter::Value::pBOOL, CCopasiParameter::Value::pCN, CCopasiParameter::Value::pDOUBLE, CCopasiParameter::Value::pEXPRESSION, CCopasiParameter::Value::pUINT, and CCopasiParameter::UINT.
Referenced by CCrossSectionProblem().
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Definition at line 68 of file CCrossSectionProblem.cpp.
Referenced by CCrossSectionProblem().
bool CCrossSectionProblem::isPositiveDirection | ( | ) | const |
Definition at line 109 of file CCrossSectionProblem.cpp.
References mpFlagPositiveDirection.
Referenced by CCrossSectionTask::createEvent(), and CQCrossSectionTaskWidget::loadTask().
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This is the output method for any object. It calls the insert operator<<
std::ostream | * ostream |
Reimplemented from CCopasiProblem.
Definition at line 88 of file CCrossSectionProblem.cpp.
Function to set mpConvergenceOutTolerance
Definition at line 203 of file CCrossSectionProblem.cpp.
References mpConvergenceOutTolerance.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and CQCrossSectionTaskWidget::slotOutputConvergence().
Function to set mpConvergenceTolerance
Definition at line 183 of file CCrossSectionProblem.cpp.
References mpConvergenceTolerance.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and CQCrossSectionTaskWidget::slotUpdateConvergence().
Function to set mpCrossingsLimit
Definition at line 121 of file CCrossSectionProblem.cpp.
References mpCrossingsLimit.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and CQCrossSectionTaskWidget::slotUpdateCrossings().
void CCrossSectionProblem::setFlagLimitConvergence | ( | bool | flagLimitConvergence | ) |
Function to set mpFlagLimitConvergence
Definition at line 178 of file CCrossSectionProblem.cpp.
References mpFlagLimitConvergence.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
void CCrossSectionProblem::setFlagLimitCrossings | ( | bool | flagLimitCrossing | ) |
Function to set mpFlagLimitCrossings
Definition at line 118 of file CCrossSectionProblem.cpp.
References mpFlagLimitCrossings.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and CQCrossSectionTaskWidget::slotUpdateCrossings().
void CCrossSectionProblem::setFlagLimitOutConvergence | ( | bool | flagLimitConvergence | ) |
Function to set mpFlagLimitOutConvergence
Definition at line 198 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutConvergence.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
void CCrossSectionProblem::setFlagLimitOutCrossings | ( | bool | flagLimitCrossing | ) |
Function to set mpFlagLimitOutCrossings
Definition at line 124 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutCrossings.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
void CCrossSectionProblem::setFlagLimitOutTime | ( | bool | flagLimitTime | ) |
Function to set mpFlagLimitOutTime
Definition at line 130 of file CCrossSectionProblem.cpp.
References mpFlagLimitOutTime.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
Function to set mpOutCrossingsLimit
Definition at line 127 of file CCrossSectionProblem.cpp.
References mpOutCrossingsLimit.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and CQCrossSectionTaskWidget::slotOutputCrossings().
void CCrossSectionProblem::setPositiveDirection | ( | bool | isPositive | ) |
Definition at line 113 of file CCrossSectionProblem.cpp.
References mpFlagPositiveDirection.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
void CCrossSectionProblem::setSingleObjectCN | ( | const std::string & | cn | ) |
Definition at line 163 of file CCrossSectionProblem.cpp.
References mSingleObjectCN.
Referenced by CQCrossSectionTaskWidget::commitInput(), CQCrossSectionTaskWidget::saveTask(), and setSingleObjectCN().
void CCrossSectionProblem::setSingleObjectCN | ( | const CCopasiObject * | pObject | ) |
Definition at line 144 of file CCrossSectionProblem.cpp.
References CCopasiObject::getCN(), and setSingleObjectCN().
Definition at line 155 of file CCrossSectionProblem.cpp.
References mpThreshold.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
Function to set mpTimeLimit
Definition at line 133 of file CCrossSectionProblem.cpp.
References CTrajectoryProblem::mpDuration.
Referenced by CQCrossSectionTaskWidget::commitInput(), and CQCrossSectionTaskWidget::saveTask().
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This is the output method for any result of a problem. The default implementation provided with CCopasiProblem. Does only print "Not implemented." To overide this default behaviour one needs to reimplement the virtual printResult function.
std::ostream | * ostream Output stream operator. Prints description of the problem |
ostream | & os |
const | Problem & A |
Definition at line 79 of file CCrossSectionProblem.cpp.
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this variable indicates the tolerance after which the calculation should be considered converged and output should commence
this member variable is mapped to a CCopasiParameter
Definition at line 229 of file CCrossSectionProblem.h.
Referenced by getConvergenceOutTolerance(), initializeParameter(), and setConvergenceOutTolerance().
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this variable indicates the tolerance after which the calculation should be considered converged
this member variable is mapped to a CCopasiParameter
Definition at line 213 of file CCrossSectionProblem.h.
Referenced by getConvergenceTolerance(), initializeParameter(), and setConvergenceTolerance().
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this variable indicates after how many crossings the calculation should be stopped if the corresponding flag is true.
this member variable is mapped to a CCopasiParameter
Definition at line 198 of file CCrossSectionProblem.h.
Referenced by getCrossingsLimit(), initializeParameter(), and setCrossingsLimit().
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this flag indicates whether the calculation should be stopped when convergence is reached
this member variable is mapped to a CCopasiParameter
Definition at line 205 of file CCrossSectionProblem.h.
Referenced by getFlagLimitConvergence(), initializeParameter(), and setFlagLimitConvergence().
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this flag indicates whether the calculation should be stopped after a given number of detected crossings
this member variable is mapped to a CCopasiParameter
Definition at line 190 of file CCrossSectionProblem.h.
Referenced by getFlagLimitCrossings(), initializeParameter(), and setFlagLimitCrossings().
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this flag indicates whether the output should only be collected once convergence is reached
this member variable is mapped to a CCopasiParameter
Definition at line 221 of file CCrossSectionProblem.h.
Referenced by getFlagLimitOutConvergence(), initializeParameter(), and setFlagLimitOutConvergence().
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this flag indicates whether the output should be collected after a given number of detected crossings
this member variable is mapped to a CCopasiParameter
Definition at line 237 of file CCrossSectionProblem.h.
Referenced by getFlagLimitOutCrossings(), initializeParameter(), and setFlagLimitOutCrossings().
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this flag indicates whether output should be selected after a delay
this member variable is mapped to a CCopasiParameter
Definition at line 252 of file CCrossSectionProblem.h.
Referenced by getFlagLimitOutTime(), initializeParameter(), and setFlagLimitOutTime().
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Definition at line 261 of file CCrossSectionProblem.h.
Referenced by initializeParameter(), isPositiveDirection(), and setPositiveDirection().
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this variable indicates after how many crossings the output should start if the corresponding flag is true.
this member variable is mapped to a CCopasiParameter
Definition at line 245 of file CCrossSectionProblem.h.
Referenced by getOutCrossingsLimit(), initializeParameter(), and setOutCrossingsLimit().
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Definition at line 262 of file CCrossSectionProblem.h.
Referenced by getThreshold(), initializeParameter(), and setThreshold().
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this variable holds the trigger expression
this member variable is mapped to a CCopasiParameter
Definition at line 259 of file CCrossSectionProblem.h.
Referenced by initializeParameter().
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Definition at line 260 of file CCrossSectionProblem.h.
Referenced by getSingleObjectCN(), initializeParameter(), and setSingleObjectCN().