COPASI API
4.16.103
|
#include <CLayout.h>
Public Member Functions | |
void | addCompartmentGlyph (CLCompartmentGlyph *glyph) |
void | addGeneralGlyph (CLGeneralGlyph *glyph) |
void | addLocalRenderInformation (CLLocalRenderInformation *pRenderInfo) |
void | addMetaboliteGlyph (CLMetabGlyph *glyph) |
void | addReactionGlyph (CLReactionGlyph *glyph) |
void | addTextGlyph (CLTextGlyph *glyph) |
void | calculateAndAssignBounds () |
CLBoundingBox | calculateBoundingBox () const |
CLayout (const std::string &name="Layout", const CCopasiContainer *pParent=NULL) | |
CLayout (const CLayout &src, const CCopasiContainer *pParent=NULL) | |
CLayout (const Layout &sbml, std::map< std::string, std::string > &layoutmap, const CCopasiContainer *pParent=NULL) | |
void | exportToDotFile (std::ostream &os) const |
void | exportToSBML (Layout *layout, const std::map< const CCopasiObject *, SBase * > &copasimodelmap, std::map< std::string, const SBase * > &sbmlIDs, const std::map< std::string, std::string > &globalKeyToIdMap) const |
const CLDimensions & | getDimensions () const |
virtual const std::string & | getKey () const |
const CCopasiVector < CLCompartmentGlyph > & | getListOfCompartmentGlyphs () const |
CCopasiVector < CLCompartmentGlyph > & | getListOfCompartmentGlyphs () |
const CCopasiVector < CLGeneralGlyph > & | getListOfGeneralGlyphs () const |
CCopasiVector< CLGeneralGlyph > & | getListOfGeneralGlyphs () |
const CCopasiVector < CLLocalRenderInformation > & | getListOfLocalRenderInformationObjects () const |
CCopasiVector < CLLocalRenderInformation > & | getListOfLocalRenderInformationObjects () |
const CCopasiVector < CLMetabGlyph > & | getListOfMetaboliteGlyphs () const |
CCopasiVector< CLMetabGlyph > & | getListOfMetaboliteGlyphs () |
const CCopasiVector < CLReactionGlyph > & | getListOfReactionGlyphs () const |
CCopasiVector< CLReactionGlyph > & | getListOfReactionGlyphs () |
const CCopasiVector < CLTextGlyph > & | getListOfTextGlyphs () const |
CCopasiVector< CLTextGlyph > & | getListOfTextGlyphs () |
const CLLocalRenderInformation * | getRenderInformation (size_t index) const |
CLLocalRenderInformation * | getRenderInformation (size_t index) |
virtual void | moveBy (const CLPoint &p) |
void | print (std::ostream *ostream) const |
virtual void | scale (const double &scaleFactor) |
void | setDimensions (const CLDimensions &d) |
~CLayout () | |
![]() | |
CLBase () | |
CLBase (const CLBase &b) | |
CLBase (const SBase &) | |
const std::string & | getTag () const |
bool | hasTag () const |
void | setTag (const std::string &tag) |
virtual | ~CLBase () |
![]() | |
virtual bool | add (CCopasiObject *pObject, const bool &adopt=true) |
CCopasiContainer (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | |
CCopasiContainer (const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | |
virtual std::string | getChildObjectUnits (const CCopasiObject *pObject) const |
virtual const CObjectInterface * | getObject (const CCopasiObjectName &cn) const |
virtual const objectMap & | getObjects () const |
virtual std::string | getUnits () const |
virtual const CCopasiObject * | getValueObject () const |
virtual bool | remove (CCopasiObject *pObject) |
virtual | ~CCopasiContainer () |
![]() | |
void | addDirectDependency (const CCopasiObject *pObject) |
CCopasiObject (const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | |
void | clearDirectDependencies () |
void | clearRefresh () |
bool | dependsOn (DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const |
void | getAllDependencies (DataObjectSet &dependencies, const DataObjectSet &context) const |
virtual CCopasiObjectName | getCN () const |
virtual const DataObjectSet & | getDirectDependencies (const DataObjectSet &context=DataObjectSet()) const |
CCopasiContainer * | getObjectAncestor (const std::string &type) const |
CCopasiDataModel * | getObjectDataModel () |
const CCopasiDataModel * | getObjectDataModel () const |
virtual std::string | getObjectDisplayName (bool regular=true, bool richtext=false) const |
const std::string & | getObjectName () const |
CCopasiContainer * | getObjectParent () const |
const std::string & | getObjectType () const |
virtual const CObjectInterface::ObjectSet & | getPrerequisites () const |
virtual Refresh * | getRefresh () const |
UpdateMethod * | getUpdateMethod () const |
virtual void * | getValuePointer () const |
bool | hasCircularDependencies (DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const |
bool | hasUpdateMethod () const |
bool | isArray () const |
bool | isContainer () const |
bool | isDataModel () const |
bool | isMatrix () const |
bool | isNameVector () const |
bool | isNonUniqueName () const |
virtual bool | isPrerequisiteForContext (const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const |
bool | isReference () const |
bool | isRoot () const |
bool | isSeparator () const |
bool | isStaticString () const |
bool | isValueBool () const |
bool | isValueDbl () const |
bool | isValueInt () const |
bool | isValueInt64 () const |
bool | isValueString () const |
bool | isVector () const |
virtual bool | mustBeDeleted (const DataObjectSet &deletedObjects) const |
void | removeDirectDependency (const CCopasiObject *pObject) |
void | setDirectDependencies (const DataObjectSet &directDependencies) |
bool | setObjectName (const std::string &name) |
virtual bool | setObjectParent (const CCopasiContainer *pParent) |
void | setObjectValue (const C_FLOAT64 &value) |
void | setObjectValue (const C_INT32 &value) |
void | setObjectValue (const bool &value) |
template<class CType > | |
void | setRefresh (CType *pType, void(CType::*method)(void)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_FLOAT64 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const C_INT32 &)) |
template<class CType > | |
void | setUpdateMethod (CType *pType, void(CType::*method)(const bool &)) |
virtual | ~CCopasiObject () |
![]() | |
CObjectInterface () | |
virtual | ~CObjectInterface () |
Protected Member Functions | |
void | writeDotEdge (std::ostream &os, const std::string &id1, const std::string &id2, int t=0) const |
void | writeDotNode (std::ostream &os, const std::string &id, const std::string &label, int t=0) const |
![]() | |
template<class CType > | |
CCopasiObject * | addMatrixReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addObjectReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
template<class CType > | |
CCopasiObject * | addVectorReference (const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) |
void | initObjects () |
![]() | |
CCopasiObject () | |
CCopasiObject (const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | |
Protected Attributes | |
CLDimensions | mDimensions |
std::string | mKey |
CCopasiVector< CLCompartmentGlyph > | mvCompartments |
CCopasiVector< CLGeneralGlyph > | mvGraphicalObjects |
CCopasiVector< CLTextGlyph > | mvLabels |
CCopasiVector < CLLocalRenderInformation > | mvLocalRenderInformationObjects |
CCopasiVector< CLMetabGlyph > | mvMetabs |
CCopasiVector< CLReactionGlyph > | mvReactions |
![]() | |
std::string | mTag |
![]() | |
objectMap | mObjects |
Friends | |
std::ostream & | operator<< (std::ostream &os, const CLayout &g) |
Additional Inherited Members | |
![]() | |
typedef std::multimap < std::string, CCopasiObject * > | objectMap |
![]() | |
typedef std::set< const CCopasiObject * > | DataObjectSet |
typedef std::vector< Refresh * > | DataUpdateSequence |
![]() | |
typedef std::set< const CObjectInterface * > | ObjectSet |
typedef std::vector < CObjectInterface * > | UpdateSequence |
![]() | |
static std::vector< Refresh * > | buildUpdateSequence (const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet()) |
static void | setRenameHandler (CRenameHandler *rh) |
![]() | |
static const std::vector < CCopasiContainer * > | EmptyList |
![]() | |
enum | Flag { Container = 0x1, Vector = 0x2, Matrix = 0x4, NameVector = 0x8, Reference = 0x10, ValueBool = 0x20, ValueInt = 0x40, ValueInt64 = 0x80, ValueDbl = 0x100, NonUniqueName = 0x200, StaticString = 0x400, ValueString = 0x800, Separator = 0x1000, ModelEntity = 0x2000, Array = 0x4000, DataModel = 0x8000, Root = 0x10000, Gui = 0x20000 } |
![]() | |
static CRenameHandler * | smpRenameHandler = NULL |
This class describes a reaction network layout. Its structure is exactly corresponding to the sbml layout extension
CLayout::CLayout | ( | const std::string & | name = "Layout" , |
const CCopasiContainer * | pParent = NULL |
||
) |
Definition at line 38 of file CLayout.cpp.
CLayout::CLayout | ( | const CLayout & | src, |
const CCopasiContainer * | pParent = NULL |
||
) |
Definition at line 52 of file CLayout.cpp.
References CCopasiVector< T >::add(), CCopasiVector< T >::begin(), CCopasiVector< T >::end(), CLTextGlyph::getGraphicalObjectKey(), CLGraphicalObject::getKey(), CCopasiObject::getKey(), CLReactionGlyph::getListOfMetabReferenceGlyphs(), CLGeneralGlyph::getListOfReferenceGlyphs(), CLGeneralGlyph::getListOfSubglyphs(), CLMetabReferenceGlyph::getMetabGlyphKey(), CLReferenceGlyph::getTargetGlyphKey(), mvCompartments, mvGraphicalObjects, mvLabels, mvMetabs, mvReactions, CLTextGlyph::setGraphicalObjectKey(), CLMetabReferenceGlyph::setMetabGlyphKey(), CLReferenceGlyph::setTargetGlyphKey(), and CCopasiVector< T >::size().
CLayout::CLayout | ( | const Layout & | sbml, |
std::map< std::string, std::string > & | layoutmap, | ||
const CCopasiContainer * | pParent = NULL |
||
) |
constructor from libsbml object. Does not read the whole libsbml tree. Additional work is done in SBMLDocumentLoader
Definition at line 216 of file CLayout.cpp.
References mKey.
CLayout::~CLayout | ( | ) |
Definition at line 234 of file CLayout.cpp.
References CCopasiRootContainer::getKeyFactory(), mKey, and CKeyFactory::remove().
void CLayout::addCompartmentGlyph | ( | CLCompartmentGlyph * | glyph | ) |
add Glyph to layout. The layout takes ownership of the glyph.
Definition at line 239 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvCompartments.
Referenced by SBMLDocumentLoader::createLayout(), CCopasiSpringLayout::createLayout(), test000097::createModel(), and CCopasiXMLParser::CompartmentGlyphElement::start().
void CLayout::addGeneralGlyph | ( | CLGeneralGlyph * | glyph | ) |
add Glyph to layout. The layout takes ownership of the glyph.
Definition at line 263 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvGraphicalObjects.
Referenced by SBMLDocumentLoader::createLayout(), CCopasiSpringLayout::createLayout(), and CCopasiXMLParser::AdditionalGOElement::start().
void CLayout::addLocalRenderInformation | ( | CLLocalRenderInformation * | pRenderInfo | ) |
add local render information to layout. The layout takes ownership of the object.
Definition at line 646 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvLocalRenderInformationObjects.
Referenced by SBMLDocumentLoader::createLayout(), and CCopasiXMLParser::LocalRenderInformationElement::start().
void CLayout::addMetaboliteGlyph | ( | CLMetabGlyph * | glyph | ) |
add Glyph to layout. The layout takes ownership of the glyph.
Definition at line 245 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvMetabs.
Referenced by SBMLDocumentLoader::createLayout(), CCopasiSpringLayout::createLayout(), and CCopasiXMLParser::MetaboliteGlyphElement::start().
void CLayout::addReactionGlyph | ( | CLReactionGlyph * | glyph | ) |
add Glyph to layout. The layout takes ownership of the glyph.
Definition at line 251 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvReactions.
Referenced by SBMLDocumentLoader::createLayout(), CCopasiSpringLayout::createLayout(), and CCopasiXMLParser::ReactionGlyphElement::start().
void CLayout::addTextGlyph | ( | CLTextGlyph * | glyph | ) |
add Glyph to layout. The layout takes ownership of the glyph.
Definition at line 257 of file CLayout.cpp.
References CCopasiVector< T >::add(), and mvLabels.
Referenced by SBMLDocumentLoader::createLayout(), CCopasiSpringLayout::createLayout(), and CCopasiXMLParser::TextGlyphElement::start().
void CLayout::calculateAndAssignBounds | ( | ) |
Calculates the Bounding Box, moves the layout to the origin and assigns it to the layout.
Definition at line 955 of file CLayout.cpp.
References calculateBoundingBox(), CLBoundingBox::getDimensions(), CLBoundingBox::getPosition(), CLPoint::getX(), CLPoint::getY(), CLPoint::getZ(), moveBy(), and setDimensions().
Referenced by CCopasiSpringLayout::finalizeState().
CLBoundingBox CLayout::calculateBoundingBox | ( | ) | const |
This methods calculates the bounding box of the layout. It traverses all layout objects and looks for the minimal and maximal x and y values that occur in the layout. These values are returned in the form of a bounding box where the minimal values are stored in the position and the maxima are given as the minimal values plus the corresponding dimension.
Definition at line 684 of file CLayout.cpp.
References CLCurve::calculateBoundingBox(), CLGraphicalObject::getBoundingBox(), CLGlyphWithCurve::getCurve(), CLBoundingBox::getDimensions(), CLDimensions::getHeight(), getListOfCompartmentGlyphs(), getListOfGeneralGlyphs(), getListOfMetaboliteGlyphs(), CLReactionGlyph::getListOfMetabReferenceGlyphs(), getListOfReactionGlyphs(), CLGeneralGlyph::getListOfReferenceGlyphs(), getListOfTextGlyphs(), CLCurve::getNumCurveSegments(), CLBoundingBox::getPosition(), CLDimensions::getWidth(), CLPoint::getX(), CLPoint::getY(), max, and CCopasiVector< T >::size().
Referenced by CQGLLayoutPainter::calculateAndAssignBounds(), calculateAndAssignBounds(), and CCopasiSpringLayout::createLayout().
void CLayout::exportToDotFile | ( | std::ostream & | os | ) | const |
Definition at line 331 of file CLayout.cpp.
References getKey(), CCopasiObject::getKey(), CLMetabReferenceGlyph::getMetabGlyphKey(), CLMetabReferenceGlyph::getRole(), mvMetabs, mvReactions, CLMetabReferenceGlyph::PRODUCT, CCopasiVector< T >::size(), CLMetabReferenceGlyph::SUBSTRATE, writeDotEdge(), and writeDotNode().
void CLayout::exportToSBML | ( | Layout * | layout, |
const std::map< const CCopasiObject *, SBase * > & | copasimodelmap, | ||
std::map< std::string, const SBase * > & | sbmlIDs, | ||
const std::map< std::string, std::string > & | globalKeyToIdMap | ||
) | const |
This method writes the information of the copasi layout object into the corresponding sbml object
Definition at line 392 of file CLayout.cpp.
References SBMLDocumentLoader::convertLayoutObjectKeys(), CSBMLExporter::createUniqueId(), CLTextGlyph::exportReferenceToSBML(), CLMetabGlyph::exportToSBML(), CLCompartmentGlyph::exportToSBML(), CLTextGlyph::exportToSBML(), CLGeneralGlyph::exportToSBML(), CLReactionGlyph::exportToSBML(), getKey(), CLGraphicalObject::getKey(), CLGeneralGlyph::getListOfReferenceGlyphs(), CLDimensions::getSBMLDimensions(), mDimensions, mvCompartments, mvGraphicalObjects, mvLabels, mvLocalRenderInformationObjects, mvMetabs, mvReactions, and CCopasiVector< T >::size().
Referenced by CListOfLayouts::exportToSBML().
|
inline |
Definition at line 76 of file CLayout.h.
References mDimensions.
Referenced by CQGLLayoutPainter::calculateAndAssignBounds(), CQGLNetworkPainter::createGraph(), CLLayoutRenderer::draw_layout(), CCopasiSpringLayout::randomize(), and CCopasiXML::saveLayoutList().
|
inlinevirtual |
Retrieves the key of the layout
Reimplemented from CCopasiObject.
Definition at line 71 of file CLayout.h.
References mKey.
Referenced by CQLayoutsWidget::createLayoutWindow(), exportToDotFile(), exportToSBML(), CCopasiXML::saveLayoutList(), CQLayoutsWidget::slotShowLayout(), and CQNewMainWindow::updateLayoutList().
|
inline |
Definition at line 81 of file CLayout.h.
References mvCompartments.
Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CQGLNetworkPainter::createGraph(), CQLayoutScene::fillFromLayout(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CQNewMainWindow::slotCalculateDimensions(), CQNewMainWindow::slotRunRandomizeLayout(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().
|
inline |
|
inline |
Definition at line 133 of file CLayout.h.
References mvGraphicalObjects.
Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CCopasiSpringLayout::createVariables(), CQLayoutScene::fillFromLayout(), CCopasiSpringLayout::finalizeState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), moveBy(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().
|
inline |
Definition at line 136 of file CLayout.h.
References mvGraphicalObjects.
|
inline |
Returns a const reference to the list of local render information objects.
Definition at line 149 of file CLayout.h.
References mvLocalRenderInformationObjects.
Referenced by CLLayoutRenderer::change_style(), SBMLDocumentLoader::createLayout(), CQLayoutScene::initializeResolver(), CCopasiXML::saveLayoutList(), CQNewMainWindow::slotRenderInfoChanged(), CQLayoutView::slotRenderInformationChanged(), CCopasiXMLParser::LocalRenderInformationElement::start(), updateRenderInformationList(), and CQNewMainWindow::updateRenderInformationList().
|
inline |
Returns a reference to the list of local render information objects.
Definition at line 155 of file CLayout.h.
References mvLocalRenderInformationObjects.
|
inline |
Definition at line 94 of file CLayout.h.
References mvMetabs.
Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CQGLNetworkPainter::createGraph(), CCopasiSpringLayout::createLayout(), CCopasiSpringLayout::createVariables(), CQLayoutScene::fillFromLayout(), getMetabGlyphForKey(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CQNewMainWindow::selectMetabolite(), CQNewMainWindow::slotCalculateDimensions(), CQNewMainWindow::slotRunRandomizeLayout(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().
|
inline |
|
inline |
Definition at line 107 of file CLayout.h.
References mvReactions.
Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CQGLNetworkPainter::createGraph(), CCopasiSpringLayout::createVariables(), CQLayoutScene::fillFromLayout(), CCopasiSpringLayout::finalizeState(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), CCopasiSpringLayout::getPotential(), CCopasiSpringLayout::initFromLayout(), moveBy(), CCopasiSpringLayout::randomize(), CCopasiXML::saveLayoutList(), CQNewMainWindow::selectReaction(), CLLayoutRenderer::setDeduceSpeciesReferenceRoles(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().
|
inline |
|
inline |
Definition at line 120 of file CLayout.h.
References mvLabels.
Referenced by CLayoutState::applyTo(), calculateBoundingBox(), CLayoutState::CLayoutState(), CQGLNetworkPainter::createGraph(), CQLayoutScene::fillFromLayout(), CLLayoutRenderer::getObjectsAt(), CLLayoutRenderer::getObjectsInBoundingBox(), getTextForItem(), CCopasiSpringLayout::initFromLayout(), moveBy(), placeTextGlyphs(), CCopasiXML::saveLayoutList(), CLayoutState::tagLayout(), and CLLayoutRenderer::update_associations().
|
inline |
const CLLocalRenderInformation * CLayout::getRenderInformation | ( | size_t | index | ) | const |
Returns a const pointer to the local render information with the given index or NULL if the index is invalid.
Definition at line 658 of file CLayout.cpp.
References mvLocalRenderInformationObjects, and CCopasiVector< T >::size().
Referenced by CQNewMainWindow::slotRenderInfoChanged(), and CQNewMainWindow::updateRenderInformationList().
CLLocalRenderInformation * CLayout::getRenderInformation | ( | size_t | index | ) |
Returns a pointer to the local render information with the given index or NULL if the index is invalid.
Definition at line 669 of file CLayout.cpp.
References mvLocalRenderInformationObjects, and CCopasiVector< T >::size().
Reimplemented from CLBase.
Definition at line 909 of file CLayout.cpp.
References getListOfCompartmentGlyphs(), getListOfGeneralGlyphs(), getListOfMetaboliteGlyphs(), getListOfReactionGlyphs(), getListOfTextGlyphs(), CLPoint::isEmpty(), CLGraphicalObject::moveBy(), and CCopasiVector< T >::size().
Referenced by CQGLLayoutPainter::calculateAndAssignBounds(), and calculateAndAssignBounds().
|
virtual |
This is the output method for any object. The default implementation provided with CCopasiObject uses the ostream operator<< of the object to print the object.To override this default behavior one needs to reimplement the virtual print function.
std::ostream | * ostream |
Reimplemented from CCopasiObject.
Definition at line 328 of file CLayout.cpp.
|
inlinevirtual |
|
inline |
Definition at line 77 of file CLayout.h.
References mDimensions.
Referenced by calculateAndAssignBounds(), CCopasiSpringLayout::createLayout(), test000097::createModel(), and CCopasiXMLParser::LayoutElement::start().
|
protected |
Definition at line 380 of file CLayout.cpp.
Referenced by exportToDotFile().
|
protected |
Definition at line 368 of file CLayout.cpp.
Referenced by exportToDotFile().
|
friend |
|
protected |
Definition at line 40 of file CLayout.h.
Referenced by exportToSBML(), getDimensions(), operator<<(), scale(), and setDimensions().
|
protected |
Definition at line 38 of file CLayout.h.
Referenced by CLayout(), getKey(), and ~CLayout().
|
protected |
Definition at line 42 of file CLayout.h.
Referenced by addCompartmentGlyph(), CLayout(), exportToSBML(), getListOfCompartmentGlyphs(), and operator<<().
|
protected |
Definition at line 46 of file CLayout.h.
Referenced by addGeneralGlyph(), CLayout(), exportToSBML(), getListOfGeneralGlyphs(), and operator<<().
|
protected |
Definition at line 45 of file CLayout.h.
Referenced by addTextGlyph(), CLayout(), exportToSBML(), getListOfTextGlyphs(), and operator<<().
|
protected |
Definition at line 47 of file CLayout.h.
Referenced by addLocalRenderInformation(), exportToSBML(), getListOfLocalRenderInformationObjects(), and getRenderInformation().
|
protected |
Definition at line 43 of file CLayout.h.
Referenced by addMetaboliteGlyph(), CLayout(), exportToDotFile(), exportToSBML(), getListOfMetaboliteGlyphs(), and operator<<().
|
protected |
Definition at line 44 of file CLayout.h.
Referenced by addReactionGlyph(), CLayout(), exportToDotFile(), exportToSBML(), getListOfReactionGlyphs(), and operator<<().