- p -
- CCopasiParameter()
: CCopasiParameter
- CCopasiParameterGroup()
: CCopasiParameterGroup
- CCopasiPlotSelectionDialog()
: CCopasiPlotSelectionDialog
- CCopasiProblem()
: CCopasiProblem
- CParticleReference()
: CParticleReference
- CPartition()
: CTrajectoryMethodDsaLsodar::CPartition
- CPermutation()
: CPermutation
- CPlotDataChannelSpec()
: CPlotDataChannelSpec
- CPlotItem()
: CPlotItem
- CPlotSelectionDialog()
: CPlotSelectionDialog
- CPlotSpecification()
: CPlotSpecification
- CPPUNIT_TEST()
: test000021
, test000022
, test000023
, test000024
, test000025
, test000026
, test000027
, test000028
, test000029
, test000030
, test000031
, test000032
, test000033
, test000034
, test000035
, test000036
, test000037
, test000038
, test000039
, test000040
, test000041
, test000042
, test000043
, test000044
, test000045
, test000046
, test000047
, test000048
, test000049
, test000050
, test000051
, test000052
, test000053
, test000054
, test000055
, test000056
, test000057
, test000058
, test000059
, test000060
, test000061
, test000062
, test000063
, test000064
, test000065
, test000066
, test000067
, test000068
, test000069
, test000070
, test000071
, test000072
, test000073
, test000074
, test000075
, test000076
, test000077
, test000078
, test000079
, test000080
, test000081
, test000082
, test000083
, test000084
, test000085
, test000086
, test000087
, test000088
, test000089
, test000090
, test000091
, test000092
, test000093
, test000094
, test000095
, test000096
, test000097
, test000098
, test000099
, test000100
, test000101
, test000102
, test000103
, test000104
, test_biomodels217_expression
, test_compare_utilities
, test_depth_first_iterator
, test_simplify
- CPPUNIT_TEST_SUITE()
: test000021
, test000022
, test000023
, test000024
, test000025
, test000026
, test000027
, test000028
, test000029
, test000030
, test000031
, test000032
, test000033
, test000034
, test000035
, test000036
, test000037
, test000038
, test000039
, test000040
, test000041
, test000042
, test000043
, test000044
, test000045
, test000046
, test000047
, test000048
, test000049
, test000050
, test000051
, test000052
, test000053
, test000054
, test000055
, test000056
, test000057
, test000058
, test000059
, test000060
, test000061
, test000062
, test000063
, test000064
, test000065
, test000066
, test000067
, test000068
, test000069
, test000070
, test000071
, test000072
, test000073
, test000074
, test000075
, test000076
, test000077
, test000078
, test000079
, test000080
, test000081
, test000082
, test000083
, test000084
, test000085
, test000086
, test000087
, test000088
, test000089
, test000090
, test000091
, test000092
, test000093
, test000094
, test000095
, test000096
, test000097
, test000098
, test000099
, test000100
, test000101
, test000102
, test000103
, test000104
, test_biomodels217_expression
, test_compare_utilities
, test_depth_first_iterator
, test_simplify
- CPPUNIT_TEST_SUITE_END()
: test000021
, test000022
, test000023
, test000024
, test000025
, test000026
, test000027
, test000028
, test000029
, test000030
, test000031
, test000032
, test000033
, test000034
, test000035
, test000036
, test000037
, test000038
, test000039
, test000040
, test000041
, test000042
, test000043
, test000044
, test000045
, test000046
, test000047
, test000048
, test000049
, test000050
, test000051
, test000052
, test000053
, test000054
, test000055
, test000056
, test000057
, test000058
, test000059
, test000060
, test000061
, test000062
, test000063
, test000064
, test000065
, test000066
, test000067
, test000068
, test000069
, test000070
, test000071
, test000072
, test000073
, test000074
, test000075
, test000076
, test000077
, test000078
, test000079
, test000080
, test000081
, test000082
, test000083
, test000084
, test000085
, test000086
, test000087
, test000088
, test000089
, test000090
, test000091
, test000092
, test000093
, test000094
, test000095
, test000096
, test000097
, test000098
, test000099
, test000100
, test000101
, test000102
, test000103
, test000104
, test_biomodels217_expression
, test_compare_utilities
, test_depth_first_iterator
, test_simplify
- CPraxis()
: CPraxis
- CPrecedence()
: CEvaluationNode::CPrecedence
- CProcessQueue()
: CProcessQueue
- CProcessReport()
: CProcessReport
- CProcessReportItem()
: CProcessReportItem
- CProgressBar()
: CProgressBar
- paint()
: CQConnectionGraphicsItem
, CQRoundedRect
- Paint()
: Paint
- paintEvent()
: PaintWidget
- paintGL()
: CQGLLayoutPainter
, CQGLNetworkPainter
- paintSchemeToEnum()
: CCellDesignerImporter
- paintTimeScale()
: CQTSSATimeScaleWidget
, PaintWidget
- PaintWidget()
: PaintWidget
- ParameterDescriptionElement()
: CCopasiXMLParser::ParameterDescriptionElement
- ParameterElement()
: CCopasiXMLParser::ParameterElement
- ParameterGroupElement()
: CCopasiXMLParser::ParameterGroupElement
- Parameters()
: CCopasiSpringLayout::Parameters
- parameterStatusChanged()
: ParameterTable
- ParameterTable()
: ParameterTable
- parameterTableValueChanged()
: CQLayoutMainWindow
- ParameterTextElement()
: CCopasiXMLParser::ParameterTextElement
- parent()
: CIndexedPriorityQueue
, CMathDependencyNodeIterator
, CQBrowserPaneDM
, CQParameterOverviewDM
- parentContextPtr()
: CNodeContextIterator< Node, Context >
- parse()
: CEvaluationTree
, CExpatTemplate< CType >
, copasi::COptionParser
, CRDFParser
- parse_element()
: copasi::COptionParser
- parse_long_option()
: copasi::COptionParser
- parse_short_option()
: copasi::COptionParser
- parse_value()
: copasi::COptionParser
- parseArgs()
: Arguments
- parseBounds()
: CCellDesignerImporter
- parseBoxSize()
: CCellDesignerImporter
- parseBuffer()
: CExpatTemplate< CType >
- parseCompartmentAlias()
: CCellDesignerImporter
- parseCompartmentAnnotation()
: CCellDesignerImporter
- parseConnectScheme()
: CCellDesignerImporter
- parseDashArray()
: CLGraphicalPrimitive1D
- parseDoubleLine()
: CCellDesignerImporter
- parseEditPoints()
: CCellDesignerImporter
- parseExtraLink()
: CCellDesignerImporter
- parseExtraLinks()
: CCellDesignerImporter
- parseLine()
: CCellDesignerImporter
- parseLineDirection()
: CCellDesignerImporter
- parseLinkTarget()
: CCellDesignerImporter
- parseModelDisplay()
: CCellDesignerImporter
- parsePaint()
: CCellDesignerImporter
- parsePoint()
: CCellDesignerImporter
- parsePointsString()
: CCellDesignerImporter
- parseProteinModification()
: CCellDesignerImporter
- parseProteins()
: CCellDesignerImporter
- parseReactionAnnotation()
: CCellDesignerImporter
- parseReactionElements()
: CCellDesignerImporter
- parseReactionModification()
: CCellDesignerImporter
- parseReactionModifications()
: CCellDesignerImporter
- parseSBML()
: SBMLImporter
- parseSEDML()
: SEDMLImporter
- parseSpeciesAlias()
: CCellDesignerImporter
- parseSpeciesAnnotation()
: CCellDesignerImporter
- parseSpeciesIdentity()
: CCellDesignerImporter
- parseSpeciesModification()
: CCellDesignerImporter
- parseSpeciesState()
: CCellDesignerImporter
- parseTransformation()
: CLTransformation2D
, CLTransformation
- parseUsualView()
: CCellDesignerImporter
- partition()
: ObjectBrowserWidget
- partitionSystem()
: CHybridMethod
, CHybridMethodLSODA
- passValue()
: CColorScale
, CColorScaleAverage
, CColorScaleBiLog
, CColorScaleSimple
- pause()
: CQAnimationControls
, CQLayoutThread
, CQPlayerControlWidget
- pauseAnimation()
: CQGLNetworkPainter
, CQLayoutMainWindow
- peekAhead()
: CLsodaMethod
- peekFirstMessage()
: CCopasiMessage
- peekLastMessage()
: CCopasiMessage
- performRankTest()
: CBitPatternMethod
- perturbateA()
: CCSPMethod
- phi()
: COptMethodGASR
, COptMethodSRES
- pick()
: CPermutation
- PJAC()
: PJAC
- PJACFunctor()
: PJACFunctor< CType >
- play()
: CQAnimationControls
, CQPlayerControlWidget
- plotData()
: CQBarChart
- PlotItemElement()
: CCopasiXMLParser::PlotItemElement
- PlotSpecificationElement()
: CCopasiXMLParser::PlotSpecificationElement
- PlotWindow()
: PlotWindow
- plus()
: CEvaluationNodeFunction
- PolygonElement()
: CCopasiXMLParser::PolygonElement
- pop()
: CMath::CAllocationStack
, CMath::CVariableStack
, ObjectList
- popData()
: CCopasiDataModel
- popElementHandler()
: CCopasiXMLParser
- populateTree()
: CCopasiSelectionWidget
, CQSimpleSelectionTree
- positionToCompartmentToEnum()
: CCellDesignerImporter
- positionToEnum()
: CCellDesignerImporter
- postprocessTextGlyph()
: SBMLDocumentLoader
- potEdge()
: CCopasiSpringLayout
- potGeneralEdge()
: CCopasiSpringLayout
- potReactionCompartment()
: CCopasiSpringLayout
- potReactionReaction()
: CCopasiSpringLayout
- potSecondOrderEdge()
: CCopasiSpringLayout
- potSpeciesCompartment()
: CCopasiSpringLayout
- potSpeciesReaction()
: CCopasiSpringLayout
- potSpeciesSpecies()
: CCopasiSpringLayout
- PQNode()
: PQNode
- praxis_()
: CPraxis
- precisionChanged()
: CQReportDefinition
- preCompileTable()
: CReportDefinition
- predifineAnnotation()
: CCSPMethod
, CTSSAMethod
- prepareModel()
: Arguments
- preprocess()
: CODEExporter
, CODEExporterC
- preprocessNode()
: SBMLImporter
- print()
: CArrayAnnotation
, CArrayElementReference
, CCopasiMethod
, CCopasiObject
, CCopasiObjectReference< CType >
, CCopasiParameter
, CCopasiParameterGroup
, CCopasiProblem
, CCopasiStaticString
, CCopasiTask::CDescription
, CCopasiTask::CResult
, CCopasiTimer
, CCopasiVectorReference< CType >
, CCrossSectionProblem
, CDimension
, CEigen
, CFitProblem
, CLayout
, CLCompartmentGlyph
, CLGeneralGlyph
, CLGlyphWithCurve
, CLGraphicalObject
, CLMetabGlyph
, CLMetabReferenceGlyph
, CLNAProblem
, CLReactionGlyph
, CLReferenceGlyph
, CLTextGlyph
, CMathObject
, CMCAProblem
, CObjectInterface
, COptProblem
, COscillationProblem
, CSensItem
, CSensProblem
, CSensTask
, CSteadyStateTask
- print_()
: CPraxis
- printAsImage()
: PlotWindow
- printAvailableFonts()
: CQGLNetworkPainter
- printBody()
: CReport
- printDebug()
: CProcessQueue
, CReaction
- PrintFilter()
: PrintFilter
- printFooter()
: CReport
- printHeader()
: CReport
- printNodeInfoForKey()
: CQGLNetworkPainter
- printNodeMap()
: CQGLNetworkPainter
- printParameterOverview()
: CModel
- printPlot()
: PlotWindow
- printPointers()
: CNormalTranslation
- printProducts()
: CNormalSum
- printRecursively()
: CArrayAnnotation
, CEvaluationNode
- printResult()
: CCopasiMethod
, CCopasiProblem
, CCSPMethod
, CEFMProblem
, CExperiment
, CFitProblem
, CILDMMethod
, CILDMModifiedMethod
, CLNAProblem
, CLNATask
, CLyapProblem
, CLyapTask
, CMCAProblem
, CMCATask
, CMoietiesProblem
, COptProblem
, COscillationProblem
, CSensProblem
, CTSSAProblem
- printTitle()
: CReportTable
- proceed()
: CProcessReport
, CProgressBar
- process()
: CCopasiTask
, CCrossSectionMethod
, CCrossSectionTask
, CEFMTask
, CFitTask
, CLNAMethod
, CLNATask
, CLyapTask
, CMCAMethod
, CMCATask
, CMoietiesMethod
, CMoietiesTask
, COptTask
, COscillationTask
, CProcessQueue::CAction
, CProcessQueue
, CQProgressItem
, CQProgressItemBar
, CQProgressItemText
, CScanTask
, CSensMethod
, CSensTask
, CSSAMethod
, CSteadyStateMethod
, CSteadyStateTask
, CTrajectoryTask
, CTSSATask
, MyLineEdit
- processArchive()
: SEDMLUtils
- processCallback()
: CScanTask
- processingInstructionHandler()
: CExpatTemplate< CType >
- processingMode()
: CNodeContextIterator< Node, Context >
- processInternal()
: CNewtonMethod
, CSteadyStateMethod
- processNewton()
: CNewtonMethod
- processQueue()
: CMathModel
, CModel
- processRoots()
: CMathModel
, CModel
- processStart()
: CCrossSectionTask
, CTrajectoryTask
, CTSSATask
- processStep()
: CCrossSectionTask
, CTrajectoryTask
, CTSSATask
- product()
: CLyapWolfMethod
- product2fraction()
: CNormalTranslation
- product_match()
: product_match
- ProductElement()
: CCopasiXMLParser::ProductElement
- progress()
: CProcessReport
- progressItem()
: CProcessReport
, CProgressBar
- protectedNotify()
: CopasiWidget
- Protein()
: Protein
- ProteinModification()
: ProteinModification
- push()
: CMath::CAllocationStack
, CMath::CVariableStack
, CSBMLunitInterface::CEnvironmentInformation
- push_back()
: CCallParameters< Type >
- push_front()
: CStepMatrixColumn
- pushData()
: CCopasiDataModel
- pushElementHandler()
: CCopasiXMLParser
- pushInitialState()
: CMathContainer
- pushPair()
: CIndexedPriorityQueue
- pushState()
: CMathContainer
- putOrigValueForSpecies()
: CDataEntity
- putValueForSpecies()
: CDataEntity