- p -

• CCopasiParameter() : CCopasiParameter
• CCopasiParameterGroup() : CCopasiParameterGroup
• CCopasiProblem() : CCopasiProblem
• CPartition() : CTrajectoryMethodDsaLsodar::CPartition
• CPermutation() : CPermutation
• CPlotDataChannelSpec() : CPlotDataChannelSpec
• CPlotItem() : CPlotItem
• CPlotSpecification() : CPlotSpecification
• CPointerContext() : CPointerContext< Data >
• CPointerContextWithParent() : CPointerContextWithParent< Data >
• CPointerMathContext() : CPointerMathContext< Data >
• CPraxis() : CPraxis
• CPrecedence() : CEvaluationNode::CPrecedence
• CProcessReport() : CProcessReport
• CProcessReportItem() : CProcessReportItem
• CProcessReportLevel() : CProcessReportLevel
• CProvenanceXMLWriter() : CProvenanceXMLWriter
• Paint() : Paint
• paintSchemeToEnum() : CCellDesignerImporter
• ParameterDescriptionHandler() : ParameterDescriptionHandler
• ParameterGroupHandler() : ParameterGroupHandler
• ParameterHandler() : ParameterHandler
• Parameters() : CCopasiSpringLayout::Parameters
• ParameterTextHandler() : ParameterTextHandler
• parent() : CIndexedPriorityQueue , CMathDependencyNodeIterator
• parentContextPtr() : CNodeContextIterator< Node, Context >
• parse() : CEvaluationTree , CExpatTemplate< CType > , copasi::COptionParser , CRDFParser
• parse_element() : copasi::COptionParser
• parse_long_option() : copasi::COptionParser
• parse_short_option() : copasi::COptionParser
• parse_value() : copasi::COptionParser
• parseBounds() : CCellDesignerImporter
• parseBoxSize() : CCellDesignerImporter
• parseBuffer() : CExpatTemplate< CType >
• parseCompartmentAlias() : CCellDesignerImporter
• parseCompartmentAnnotation() : CCellDesignerImporter
• parseConnectScheme() : CCellDesignerImporter
• parseContent() : ResultParser
• parseDashArray() : CLGraphicalPrimitive1D
• parseDoubleLine() : CCellDesignerImporter
• parseEditPoints() : CCellDesignerImporter
• parseExtraLink() : CCellDesignerImporter
• parseExtraLinks() : CCellDesignerImporter
• parseFile() : ResultParser
• parseItem() : ResultParser
• parseLine() : CCellDesignerImporter
• parseLineDirection() : CCellDesignerImporter
• parseLinkTarget() : CCellDesignerImporter
• parseModelDisplay() : CCellDesignerImporter
• parsePaint() : CCellDesignerImporter
• parsePoint() : CCellDesignerImporter
• parsePointsString() : CCellDesignerImporter
• parseProteinModification() : CCellDesignerImporter
• parseProteins() : CCellDesignerImporter
• parseReactionAnnotation() : CCellDesignerImporter
• parseReactionElements() : CCellDesignerImporter
• parseReactionModification() : CCellDesignerImporter
• parseReactionModifications() : CCellDesignerImporter
• parseSBML() : SBMLImporter
• parseSEDML() : SEDMLImporter
• parseSpeciesAlias() : CCellDesignerImporter
• parseSpeciesAnnotation() : CCellDesignerImporter
• parseSpeciesIdentity() : CCellDesignerImporter
• parseSpeciesModification() : CCellDesignerImporter
• parseSpeciesState() : CCellDesignerImporter
• parseStream() : ResultParser
• parseTransformation() : CLTransformation2D , CLTransformation
• parseUsualView() : CCellDesignerImporter
• parseValue() : ResultParser
• partitionSystem() : CHybridMethod , CHybridMethodODE45
• peekAhead() : CLsodaMethod2 , CLsodaMethod , CRadau5Method , CTimeSensLsodaMethod
• peekFirstMessage() : CCopasiMessage
• peekLastMessage() : CCopasiMessage
• performRankTest() : CBitPatternMethod
• phi() : COptMethodGASR , COptMethodSRES
• pick() : CPermutation
• PJAC() : PJAC
• PJACFunctor() : PJACFunctor< CType >
• plotData() : CQBarChart
• PlotItemHandler() : PlotItemHandler
• PlotSpecificationHandler() : PlotSpecificationHandler
• plus() : CEvaluationNodeFunction
• PointHandler() : PointHandler
• PolygonHandler() : PolygonHandler
• popData() : CDataModel
• popElementHandler() : CXMLParser
• positionToCompartmentToEnum() : CCellDesignerImporter
• positionToEnum() : CCellDesignerImporter
• postprocessTextGlyph() : SBMLDocumentLoader
• potEdge() : CCopasiSpringLayout
• potGeneralEdge() : CCopasiSpringLayout
• potReactionCompartment() : CCopasiSpringLayout
• potReactionReaction() : CCopasiSpringLayout
• potSecondOrderEdge() : CCopasiSpringLayout
• potSpeciesCompartment() : CCopasiSpringLayout
• potSpeciesReaction() : CCopasiSpringLayout
• potSpeciesSpecies() : CCopasiSpringLayout
• power() : CDerive
• PQNode() : PQNode
• prC_INT322() : CPraxis
• preCompileTable() : CReportDefinition
• prefixFromScale() : CBaseUnit
• prepareElasticity() : CModel
• preprocess() : CODEExporter , CODEExporterC
• preprocessNode() : SBMLImporter
• prerequisitsContains() : CDataObject
• prettyPrint() : CUnit
• print() : CAnalyticsProblem , CArrayElementReference , CCopasiMethod , CCopasiParameter , CCopasiParameterGroup , CCopasiProblem , CCopasiTask::CDescription , CCopasiTask::CResult , CCopasiTaskStatus , CCopasiTimer , CCrossSectionProblem , CDataArray , CDataObject , CDataObjectReference< CType > , CDataString , CDataVectorReference< CType > , CEigen , CFitProblem , CLayout , CLCompartmentGlyph , CLGeneralGlyph , CLGlyphWithCurve , CLGraphicalObject , CLMetabGlyph , CLMetabReferenceGlyph , CLNAProblem , CLReactionGlyph , CLReferenceGlyph , CLTextGlyph , CMathObject , CMCAProblem , CObjectInterface , COptPopulationMethod , COptProblem , COscillationProblem , CSensItem , CSensProblem , CSensTask , CSteadyStateTask
• printBody() : CReport
• printDebug() : CMathEventQueue , CReaction
• printFooter() : CReport
• printHeader() : CReport
• printObjectSet() : CTimeSensMethod
• printRecursively() : CDataArray , CEvaluationNode
• printResult() : CCopasiMethod , CCopasiProblem , CCSPMethod , CEFMProblem , CExperiment , CFitProblem , CILDMMethod , CILDMModifiedMethod , CLNAProblem , CLNATask , CLyapProblem , CLyapTask , CMCAProblem , CMCATask , CMoietiesProblem , COptProblem , COscillationProblem , CSensProblem , CTrajectoryProblem , CTSSAProblem
• printTitle() : CReportTable
• printUpdateSeq() : CTimeSensMethod
• proceed() : CProcessReport , CProcessReportLevel
• process() : CAnalyticsMethod , CAnalyticsTask , CCopasiTask , CCrossSectionMethod , CCrossSectionTask , CEFMTask , CFitTask , CLNAMethod , CLNATask , CLyapTask , CMathEventQueue::CAction , CMathEventQueue , CMCAMethod , CMCATask , CMoietiesMethod , CMoietiesTask , COptTask , COscillationTask , CScanTask , CSensMethod , CSensTask , CSSAMethod , CSteadyStateMethod , CSteadyStateTask , CTimeSensTask , CTrajectoryTask , CTSSATask
• processCallback() : CScanTask
• processEnd() : AdditionalGraphicalObjectHandler , AssignmentHandler , BoundingBoxHandler , CallParameterHandler , ChannelSpecHandler , CharacterDataHandler , ColorDefinitionHandler , CommentHandler , CompartmentGlyphHandler , CompartmentHandler , ConstantHandler , COPASIHandler , CubicBezierHandler , CurveHandler , CXMLHandler , DimensionsHandler , EllipseHandler , EventHandler , FunctionHandler , GradientStopHandler , GroupHandler , GUIHandler , ImageHandler , InitialStateHandler , KineticLawHandler , LayoutHandler , LinearGradientHandler , LineEndingHandler , LineSegmentHandler , ListOfCurveSegmentsHandler , ListOfGradientDefinitionsHandler , ListOfHandler , ListOfLayoutsHandler , MathMLHandler , MetaboliteGlyphHandler , MetaboliteHandler , MetaboliteReferenceGlyphHandler , MethodHandler , MiriamAnnotationHandler , ModelHandler , ModelParameterGroupHandler , ModelParameterHandler , ModelParameterSetHandler , ModelValueHandler , ModifierHandler , ObjectHandler , ParameterDescriptionHandler , ParameterGroupHandler , ParameterHandler , ParameterTextHandler , PlotItemHandler , PlotSpecificationHandler , PointHandler , PolygonHandler , ProductHandler , RadialGradientHandler , ReactionGlyphHandler , ReactionHandler , RectangleHandler , RenderCurveElementHandler , RenderCurveHandler , RenderInformationHandler , RenderTextHandler , ReportDefinitionHandler , ReportSectionHandler , ReportTargetHandler , SBMLMapHandler , SliderHandler , SourceParameterHandler , StateTemplateHandler , StateTemplateVariableHandler , StyleHandler , SubstrateHandler , TableHandler , TaskHandler , TextGlyphHandler , UnitDefinitionHandler , UNKNOWNHandler , UnsupportedAnnotationHandler
• processingInstructionHandler() : CExpatTemplate< CType >
• processingMode() : CNodeContextIterator< Node, Context >
• processInternal() : CNewtonMethod , CSteadyStateMethod
• processNewton() : CNewtonMethod
• processQueue() : CMathContainer
• processRoots() : CMathContainer
• processStart() : AdditionalGraphicalObjectHandler , AssignmentHandler , BoundingBoxHandler , CallParameterHandler , ChannelSpecHandler , CharacterDataHandler , ColorDefinitionHandler , CommentHandler , CompartmentGlyphHandler , CompartmentHandler , ConstantHandler , COPASIHandler , CTimeSensTask , CTrajectoryTask , CTSSATask , CubicBezierHandler , CurveHandler , CXMLHandler , DimensionsHandler , EllipseHandler , EventHandler , FunctionHandler , GradientStopHandler , GroupHandler , GUIHandler , ImageHandler , InitialStateHandler , KineticLawHandler , LayoutHandler , LinearGradientHandler , LineEndingHandler , LineSegmentHandler , ListOfCurveSegmentsHandler , ListOfGradientDefinitionsHandler , ListOfHandler , ListOfLayoutsHandler , MathMLHandler , MetaboliteGlyphHandler , MetaboliteHandler , MetaboliteReferenceGlyphHandler , MethodHandler , MiriamAnnotationHandler , ModelHandler , ModelParameterGroupHandler , ModelParameterHandler , ModelParameterSetHandler , ModelValueHandler , ModifierHandler , ObjectHandler , ParameterDescriptionHandler , ParameterGroupHandler , ParameterHandler , ParameterTextHandler , PlotItemHandler , PlotSpecificationHandler , PointHandler , PolygonHandler , ProductHandler , RadialGradientHandler , ReactionGlyphHandler , ReactionHandler , RectangleHandler , RenderCurveElementHandler , RenderCurveHandler , RenderInformationHandler , RenderTextHandler , ReportDefinitionHandler , ReportSectionHandler , ReportTargetHandler , SBMLMapHandler , SliderHandler , SourceParameterHandler , StateTemplateHandler , StateTemplateVariableHandler , StyleHandler , SubstrateHandler , TableHandler , TaskHandler , TextGlyphHandler , UnitDefinitionHandler , UNKNOWNHandler , UnsupportedAnnotationHandler
• processStep() : CTimeSensTask , CTrajectoryTask , CTSSATask
• processTrajectory() : CTrajectoryTask
• processValues() : CTrajectoryTask
• product() : CLyapWolfMethod
• ProductHandler() : ProductHandler
• progress() : CProcessReport , CProcessReportLevel
• progressItem() : CProcessReport , CProcessReportLevel
• Protein() : Protein
• ProteinModification() : ProteinModification
• purgeUnusedUserDefinedFunctions() : CFunctionDB
• push() : CSBMLunitInterface::CEnvironmentInformation
• push_back() : CCallParameters< Type >
• push_front() : CStepMatrixColumn
• pushAllTransientValues() : CMathContainer
• pushData() : CDataModel
• pushElementHandler() : CXMLParser
• pushInitialState() : CMathContainer
• pushPair() : CIndexedPriorityQueue
• pushState() : CMathContainer