Here is a list of all class members with links to the classes they belong to:
- o -
- CObjectInterface()
: CObjectInterface
- CODEExporter()
: CODEExporter
- CODEExporterBM()
: CODEExporterBM
- CODEExporterC()
: CODEExporterC
- CODEExporterXPPAUT()
: CODEExporterXPPAUT
- ColorDefinition
: CXMLHandler
- ColorDefinitionHandler()
: ColorDefinitionHandler
- ColumnScale()
: ColumnScale
- COMBINE_CALLBACK()
: CLLayoutRenderer
- COMBINE_CALLBACK_GRADIENT()
: CLLayoutRenderer
- COMMANDLINE
: CCopasiMessage
- COMMANDLINE_FILTERED
: CCopasiMessage
- Comment
: CXMLHandler
- CommentHandler()
: CommentHandler
- CompareDefault()
: CompareDefault< RandomAccessIterator >
- CompareDoubleWithNaN()
: CompareDoubleWithNaN
- CompareResult
: CModelParameter
- CompareResultNames
: CModelParameter
- Compartment
: CXMLHandler
- COMPARTMENT_4V
: CCopasiSpringLayout::UpdateAction
- COMPARTMENT_INITIAL_VOLUMES
: CObjectLists
- COMPARTMENT_RATES
: CObjectLists
- COMPARTMENT_VOLUMES
: CObjectLists
- CompartmentAlias()
: CompartmentAlias
- CompartmentAnnotation()
: CompartmentAnnotation
- CompartmentGlyph
: CXMLHandler
- CompartmentGlyphHandler()
: CompartmentGlyphHandler
- CompartmentHandler()
: CompartmentHandler
- CompartmentInfo()
: CompartmentInfo
- COMPARTMENTS
: CObjectLists
- Compiled
: CReport
- ConfigDir
: copasi::option_locations
, copasi::options
- ConfigFile
: copasi::option_locations
, copasi::options
- ConnectScheme()
: ConnectScheme
- CONST_COMPARTMENT_VOLUMES
: CObjectLists
- CONST_GLOBAL_PARAMETER_INITIAL_VALUES
: CObjectLists
- CONST_METAB_CONCENTRATIONS
: CObjectLists
- CONST_METAB_NUMBERS
: CObjectLists
- Constant
: CXMLHandler
- ConstantHandler()
: ConstantHandler
- ConstraintCounter
: COptProblem::sCounter
- Container
: CDataObject
- Container2Info
: CAnnotation
- ContainerList
: CObjectInterface
- ContainerState
: CLsodaMethod2::State
, CLsodaMethod::State
, CRadau5Method::State
, CTimeSensLsodaMethod::State
- ContentType
: CDataModel
- ContentTypeNames
: CDataModel
- CONTINUE
: CRungeKutta
- CONTINUOUS
: CRootFinder
- ConverterASTNode()
: ConverterASTNode
- ConvertToIrreversible
: copasi::option_locations
, copasi::options
- COPASI
: CXMLHandler
- Copasi2SBMLTranslator()
: Copasi2SBMLTranslator
- COPASI_LINE_STYLE_MAP
: SEDMLUtils
- COPASI_SYMBOL_MAP
: SEDMLUtils
- CopasiDir
: copasi::option_locations
, copasi::options
- COPASIHandler()
: COPASIHandler
- COptionParser()
: copasi::COptionParser
- COptions()
: COptions
- COptionValue()
: COptions::COptionValue
- COptionValueTemplate()
: COptions::COptionValueTemplate< CType >
- COptItem()
: COptItem
- COptLog()
: COptLog
- COptLogEntry()
: COptLogEntry
- COptLogItem()
: COptLogItem
- COptMethod()
: COptMethod
- COptMethodCoranaWalk()
: COptMethodCoranaWalk
- COptMethodDE()
: COptMethodDE
- COptMethodEP()
: COptMethodEP
- COptMethodGA()
: COptMethodGA
- COptMethodGASR()
: COptMethodGASR
- COptMethodHookeJeeves()
: COptMethodHookeJeeves
- COptMethodLevenbergMarquardt()
: COptMethodLevenbergMarquardt
- COptMethodNelderMead()
: COptMethodNelderMead
- COptMethodNL2SOL()
: COptMethodNL2SOL
- COptMethodPraxis()
: COptMethodPraxis
- COptMethodPS()
: COptMethodPS
- COptMethodSA()
: COptMethodSA
- COptMethodSRES()
: COptMethodSRES
- COptMethodSS()
: COptMethodSS
- COptMethodStatistics()
: COptMethodStatistics
- COptMethodSteepestDescent()
: COptMethodSteepestDescent
- COptMethodTruncatedNewton()
: COptMethodTruncatedNewton
- COptPopulationMethod()
: COptPopulationMethod
- COptProblem()
: COptProblem
- COptTask()
: COptTask
- COscillationMethod()
: COscillationMethod
- COscillationMethod::createMethod
: COscillationMethodIntegrate
- COscillationMethodIntegrate()
: COscillationMethodIntegrate
- COscillationProblem()
: COscillationProblem
- COscillationTask()
: COscillationTask
- Counter
: COptProblem::sCounter
- COutputDefinitionVector()
: COutputDefinitionVector
- COutputHandler()
: COutputHandler
- COutputInterface()
: COutputInterface
- oacc
: olist
- Object
: CODEExporter
, CXMLHandler
- object2variable()
: CReaction
- OBJECT_FLAG
: CData
- OBJECT_HASH
: CData
- OBJECT_INDEX
: CData
- OBJECT_NAME
: CData
- OBJECT_PARENT_CN
: CData
- OBJECT_POINTER
: CData
- OBJECT_REFERENCE
: CData
- OBJECT_REFERENCE_CN
: CData
- OBJECT_REFERENCE_INDEX
: CData
- OBJECT_REFERENCES
: CData
- OBJECT_TYPE
: CData
- OBJECT_UUID
: CData
- objectAfter
: CUndoData::ChangeInfo
- ObjectBalance
: CMathReaction
- objectBefore
: CUndoData::ChangeInfo
- ObjectHandler()
: ObjectHandler
- objectiveValue()
: COptMethod
- ObjectList
: CObjectLists
- objectMap
: CDataContainer
- objectRenamed()
: CDataContainer
, CDataObjectMap
- objects2variables()
: CReaction
- ObjectSet
: CObjectInterface
- objectType
: CUndoData::ChangeInfo
- ObjList
: CKinFunction
- oblnk
: olist
- ode
: CODEExporter
- ODE_COMPARTMENT_VOLUMES
: CObjectLists
- ODE_GLOBAL_PARAMETER_VALUES
: CObjectLists
- ODE_METAB_CONCENTRATIONS
: CObjectLists
- ODE_METAB_NUMBERS
: CObjectLists
- ODEs
: CODEExporter
- oerr
: olist
- offset
: CMath::sRelocate
- ofm
: olist
- ofnm
: olist
- ofnmlen
: olist
- omega
: CRandom::PoissonVars
- onCharacterData()
: CExpat
, CExpatTemplate< CType >
, CXMLParser
- onComment()
: CExpat
, CExpatTemplate< CType >
- onDefault()
: CExpat
, CExpatTemplate< CType >
- onEndCdataSection()
: CExpat
, CExpatTemplate< CType >
- onEndDoctypeDecl()
: CExpat
, CExpatTemplate< CType >
- onEndElement()
: CExpat
, CExpatTemplate< CType >
, CXMLParser
- onEndNamespaceDecl()
: CExpat
, CExpatTemplate< CType >
- onExternalEntityRef()
: CExpat
, CExpatTemplate< CType >
- ONLY_TIME_SERIES
: CCopasiTask
- onPostCreate()
: CExpatTemplate< CType >
- onProcessingInstruction()
: CExpat
, CExpatTemplate< CType >
- onSkippedEntityHandler()
: CExpat
, CExpatTemplate< CType >
, CXMLParser
- onStartCdataSection()
: CExpat
, CExpatTemplate< CType >
- onStartDoctypeDecl()
: CExpat
, CExpatTemplate< CType >
- onStartElement()
: CExpat
, CExpatTemplate< CType >
, CXMLParser
- onStartNamespaceDecl()
: CExpat
, CExpatTemplate< CType >
- onUnknownEncoding()
: CExpat
, CExpatTemplate< CType >
- onXmlDecl()
: CExpat
, CExpatTemplate< CType >
- open()
: CReport
- openCombineArchive()
: CDataModel
- openum_
: copasi::COptionParser
- Operation
: CExpressionGenerator
- OperationNames
: CExpressionGenerator
- OperationParts
: CExpressionGenerator
- OPERATOR
: CEvaluationNodeOperator
- operator bitset()
: CFlags< Enum >
- operator bool()
: CFlags< Enum >
, CIssue
, CProcessReportLevel
, CRDFTriplet
- operator const C_FLOAT64 &()
: CCopasiXMLInterface::DBL
, CSparseMatrixElement
- operator const CMatrix< C_FLOAT64 >()
: CSparseMatrix
- operator const CType *()
: CDataVector< CType >::const_iterator
- operator CType *()
: CDataVector< CType >::iterator
- operator!=()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CData
, CDataObjectMap::const_iterator
, CDataObjectMap::const_type_iterator< CType >
, CDataObjectMap::iterator
, CDataObjectMap::type_iterator< CType >
, CDataValue
, CDataVector< CType >
, CEvaluationNode
, CEventAssignment
, CFlags< Enum >
, CLRelAbsVector
, CRDFPredicate
, CSensItem
, CVersion
- operator&=()
: CFlags< Enum >
, CIssue
, CZeroSet
- operator()()
: BarColor
, CBrent::Eval
, CBrent::EvalTemplate< CType >
, CCallback< Callee >
, CCallbackInterface
, CFortranAccess< Matrix >
, CKeyFactory::CDecisionVector
, CLFontRendererBase
, CLImageTexturizer
, CLinkMatrixView
, CLowerTriangularView< Matrix >
, CLSimpleImageTexturizer
, CLSODA
, CLSODAR
, CMatrix< CType >
, CompareDefault< RandomAccessIterator >
, CompareDoubleWithNaN
, compareGraphicalObjectsBySize
, CPraxis
, CRadau5
, CRegisteredCommonName::ClassMemberRename< Renamer >
, CRegisteredCommonName::Rename
, CRegisteredCommonName::RenameInterface
, CRootFinder::Eval
, CRootFinder::EvalTemplate< CType >
, CRungeKutta
, CSEDMLExporter::KeyComparer
, CSEDMLExporter::PlotItemStyleComparer
, CSparseMatrix
, CStaticCallback
, CTransposeView< Matrix >
, CUnitLowerTriangularView< Matrix >
, CUnitUpperTriangularView< Matrix >
, CUpperTriangularView< Matrix >
, CVectorCore< CType >
, Cxerrwd
, FDescent
, FDescentTemplate< CType >
, FNL2SOL
, FNL2SOLTemplate< CType >
, FPraxis
, FPraxisTemplate< CType >
, FSwapBase< IndexType, ReturnType >
, FSwapClass< ClassType, IndexType, ReturnType >
, FTruncatedNewton
, FTruncatedNewtonTemplate< CType >
, omp_info
, PJAC
, PJACFunctor< CType >
, SLVS
, SLVSFunctor< CType >
- operator*()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CDataObjectMap::const_iterator
, CDataObjectMap::const_type_iterator< CType >
, CDataObjectMap::iterator
, CDataObjectMap::type_iterator< CType >
, CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
, CFunctionAnalyzer::CValue
, CLPoint
, CMathDependencyNodeIterator
, CNodeContextIterator< Node, Context >
, CUnit
, CValidatedUnit
- operator+()
: CCopasiTimeVariable
, CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
, CFunctionAnalyzer::CValue
, CLPoint
, CLRelAbsVector
- operator++()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CDataObjectMap::const_iterator
, CDataObjectMap::const_type_iterator< CType >
, CDataObjectMap::iterator
, CDataObjectMap::type_iterator< CType >
, CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
, CProcessReportLevel
, CZeroSet::CIndex
- operator+=()
: CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
- operator-()
: CCopasiTimeVariable
, CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
, CFunctionAnalyzer::CValue
, CLPoint
- operator--()
: CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
- operator-=()
: CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
- operator->()
: CCompressedColumnFormat::const_row_iterator
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CDataObjectMap::const_iterator
, CDataObjectMap::const_type_iterator< CType >
, CDataObjectMap::iterator
, CDataObjectMap::type_iterator< CType >
, CDataVector< CType >::const_iterator
, CDataVector< CType >::iterator
, CMathDependencyNodeIterator
, CNodeContextIterator< Node, Context >
- operator/()
: CFunctionAnalyzer::CValue
, CLRelAbsVector
- operator<()
: CCopasiTimeVariable
, CEvaluationNode
, CExpressionGenerator::sOperation
, CFluxScore
, CLFontSpec
, CLLineSegment
, CLPoint
, CMathEventQueue::CKey
, CModelParameter
, CRDFPredicate
, CRDFTriplet
, CUndoData
, CUnit
, CUnitComponent
, CValidatedUnit
, CVersion
, CZeroSet::CIndex
, VariableInfo
- operator<<
: CAnalyticsProblem
, CChemEq
, CChemEqElement
, CCompartment
, CCopasiMethod
, CCopasiParameter
, CCopasiParameterGroup
, CCopasiProblem
, CCopasiTask::CDescription
, CCopasiTask::CResult
, CCopasiTree< _Node >
, CCopasiXMLInterface::DBL
, CCrossSectionProblem
, CData
, CDataArray
, CDataObject
, CDataValue
, CDataVector< CType >
, CDependencyGraph
, CDependencyGraphNode
, CEigen
, CEvent
, CFitItem
, CFitProblem
, CFluxScore
, CFunction
, CFunctionAnalyzer::CValue
, CFunctionParameter
, CFunctionParameters
, CHybridBalance
, CHybridStochFlag
, CIndexedPriorityQueue
, CLayout
, CLBoundingBox
, CLCompartmentGlyph
, CLCurve
, CLDimensions
, CLGeneralGlyph
, CLGlyphWithCurve
, CLGraphicalObject
, CLinkMatrixView
, CLLineSegment
, CLMetabGlyph
, CLMetabReferenceGlyph
, CLNAProblem
, CLNATask
, CLowerTriangularView< Matrix >
, CLPoint
, CLReactionGlyph
, CLReferenceGlyph
, CLTextGlyph
, CMathEvent::CAssignment
, CMathEvent::CTrigger::CRootProcessor
, CMathEvent::CTrigger
, CMathEvent
, CMathEventQueue::CAction
, CMathEventQueue::CKey
, CMathEventQueue
, CMathObject
, CMatrix< CType >
, CMCAProblem
, CMCATask
, CMetab
, CModelParameter
, CModelValue
, CModelVersion
, COptItem
, COptPopulationMethod
, COptProblem
, COscillationProblem
, CRDFPredicate
, CReaction
, CSensProblem
, CSensTask
, CSparseMatrix
, CSteadyStateTask
, CStepMatrix
, CStepMatrixColumn
, CTableauLine
, CTableauMatrix
, CTransposeView< Matrix >
, CUndoData
, CUnit
, CUnitComponent
, CUnitDefinition
, CUnitLowerTriangularView< Matrix >
, CUnitUpperTriangularView< Matrix >
, CUpperTriangularView< Matrix >
, CValidatedUnit
, CVectorCore< CType >
, CXMLAttributeList
, CZeroSet
, PQNode
- operator<=()
: CVersion
- operator=()
: CCompressedColumnFormat::const_row_iterator
, CCompressedColumnFormat
, CConfigurationFile
, CContext< Data >
, CCopasiMessage
, CCopasiMethod
, CCopasiParameter
, CCopasiParameterGroup
, CCopasiReportSeparator
, CCopasiTimeVariable
, CCopasiTree< _Node >::const_iterator
, CCopasiTree< _Node >::iterator
, CData
, CDataArray
, CDataModel::CContent
, CDataString
, CDataValue
, CDataVector< CType >::iterator
, CDataVector< CType >
, CDataVectorN< CType >
, CEvent
, CExperiment
, CExperimentObjectMap::CDataColumn
, CExperimentObjectMap
, CFunctionParameters
, CLColorDefinition
, CLCompartmentGlyph
, CLEllipse
, CLGeneralGlyph
, CLGlyphWithCurve
, CLGradientBase
, CLGradientStop
, CLGraphicalObject
, CLGroup
, CLGroupAttributes
, CLImage
, CLinkMatrixView
, CLLinearGradient
, CLLineEnding
, CLMetabGlyph
, CLMetabReferenceGlyph
, CLocaleString
, CLPolygon
, CLRadialGradient
, CLReactionGlyph
, CLRectangle
, CLReferenceGlyph
, CLRelAbsVector
, CLRenderCubicBezier
, CLRenderCurve
, CLRenderInformationBase
, CLRenderPoint
, CLRenderResolver
, CLStyle
, CLText
, CLTextGlyph
, CMathEvent
, CMathHistory
, CMathHistoryCore
, CMathUpdateSequence
, CMatrix< CType >
, CMetab
, CMIRIAMResources
, CModel
, CRDFNode
, CRDFObject
, CRDFPredicate
, CRDFSubject
, CReaction
, CRootContainer
, CSBMLunitInterface
, CSparseMatrix
, CSparseMatrixElement
, CTimeSeries
, CUnit
, CUnitDefinition
, CValidity
, CVector< CType >
, CVectorCore< CType >
, CZeroSet::CIndex
, SedmlImportOptions
- operator==()
: CAnnotation
, CContext< Data >
, CCopasiParameter
, CCopasiParameterGroup
, CData
, CDataValue
, CEvaluationNode
, CEvaluationTree
, CExperiment
, CFlags< Enum >
, CFunction
, CFunctionAnalyzer::CValue
, CFunctionParameters
, CIssue
, CLCurve
, CLLineSegment
, CLPoint
, CLRelAbsVector
, CLRenderPoint
, CMathContainer
, CRDFObject
, CRDFPredicate
, CRDFSubject
, CRDFTriplet
, CSensItem
, CUnit
, CUnitComponent
, CVectorCore< CType >
, CVersion
, CZeroSet
- operator>()
: CVersion
- operator>=()
: CVersion
, CZeroSet
- operator>>
: CData
, CDataValue
, CTableCell
, CTableRow
- operator[]()
: CArray
, CArrayInterface
, CCallParameters< Type >
, CDataArray
, CDataVector< CType >
, CDataVectorN< CType >
, CEnumAnnotation< Type, Enum >
, CFortranAccess< Matrix >
, CFunctionParameters
, CIndexedPriorityQueue
, CMathHistoryCore
, CMatrix< CType >
, CMatrixInterface< MatrixType >
, CUndoStack
, CVectorCore< CType >
, CVectorInterface< VectorType >
- operator^()
: CFunctionAnalyzer::CValue
- operator^=()
: CFlags< Enum >
- operator|=()
: CFlags< Enum >
, CValidity
, CZeroSet
- opsource
: copasi::COptionParser
- optimise()
: COptMethod
, COptMethodCoranaWalk
, COptMethodDE
, COptMethodEP
, COptMethodGA
, COptMethodGASR
, COptMethodHookeJeeves
, COptMethodLevenbergMarquardt
, COptMethodNelderMead
, COptMethodNL2SOL
, COptMethodPraxis
, COptMethodPS
, COptMethodSA
, COptMethodSRES
, COptMethodSS
, COptMethodStatistics
, COptMethodSteepestDescent
, COptMethodTruncatedNewton
, CRandomSearch
- Optimization
: CSensProblem
- option_ConfigDir
: copasi::COptionParser
- option_ConfigFile
: copasi::COptionParser
- option_ConvertToIrreversible
: copasi::COptionParser
- option_CopasiDir
: copasi::COptionParser
- option_error()
: copasi::option_error
- option_ExportBerkeleyMadonna
: copasi::COptionParser
- option_ExportC
: copasi::COptionParser
- option_ExportCombineArchive
: copasi::COptionParser
- option_ExportIni
: copasi::COptionParser
- option_ExportSBML
: copasi::COptionParser
- option_ExportSEDML
: copasi::COptionParser
- option_ExportXPPAUT
: copasi::COptionParser
- option_Home
: copasi::COptionParser
- option_ImportCombineArchive
: copasi::COptionParser
- option_ImportSBML
: copasi::COptionParser
- option_ImportSEDML
: copasi::COptionParser
- option_License
: copasi::COptionParser
- option_MaxTime
: copasi::COptionParser
- option_NoLogo
: copasi::COptionParser
- option_PrintSedMLTasks
: copasi::COptionParser
- option_ReparameterizeModel
: copasi::COptionParser
- option_ReportFile
: copasi::COptionParser
- option_Save
: copasi::COptionParser
- option_SBMLSchema
: copasi::COptionParser
- option_ScheduledTask
: copasi::COptionParser
- option_SedmlTask
: copasi::COptionParser
- option_Tmp
: copasi::COptionParser
- option_Validate
: copasi::COptionParser
- option_Verbose
: copasi::COptionParser
- options
: CDefaultOutputDescription
, copasi::options
- options_
: copasi::COptionParser
- options_enum
: copasi::COptionParser
- optionType
: COptions
- Or()
: CFunctionAnalyzer::CValue
- orderRules()
: CSBMLExporter
- ORGANIZATION
: CData
- orl
: olist
- orthog()
: CTSSAMethod
- orthonormalize()
: CLyapWolfMethod
- orValue()
: CFunctionAnalyzer::CValue
- osta
: olist
- ounit
: olist
- output()
: CCopasiTask
- OUTPUT
: CCopasiTask
- output()
: CDataHandler
, COutputHandler
, COutputInterface
, CRadau5Method
, CReport
, CTimeSensMethod
, CTimeSensTask
, CTimeSeries
, CTrajectoryMethod
- OUTPUT_AFTER
: CCopasiTask
- OUTPUT_BEFORE
: CCopasiTask
- OUTPUT_DURING
: CCopasiTask
- OUTPUT_SE
: CCopasiTask
- OUTPUT_UI
: CCopasiTask
- OutputDataStructuresInitialized
: CCopasiTaskStatus
- OutputFlag
: CCopasiTask
- outputIncompatibilities()
: CSBMLExporter
- outputSeparatorCallback()
: CScanTask
- outputStatistics()
: CSBMLunitInterface