Here is a list of all class members with links to the classes they belong to:

- p -

• CCopasiParameter() : CCopasiParameter
• CCopasiParameterGroup() : CCopasiParameterGroup
• CCopasiProblem() : CCopasiProblem
• CPartition() : CTrajectoryMethodDsaLsodar::CPartition
• CPermutation() : CPermutation
• CPlotDataChannelSpec() : CPlotDataChannelSpec
• CPlotItem() : CPlotItem
• CPlotSpecification() : CPlotSpecification
• CPointerContext() : CPointerContext< Data >
• CPointerContextWithParent() : CPointerContextWithParent< Data >
• CPointerMathContext() : CPointerMathContext< Data >
• CPraxis() : CPraxis
• CPrecedence() : CEvaluationNode::CPrecedence
• CProcessReport() : CProcessReport
• CProcessReportItem() : CProcessReportItem
• CProcessReportLevel() : CProcessReportLevel
• CProvenanceXMLWriter() : CProvenanceXMLWriter
• p : CRandom::PoissonVars
• p0 : CRandom::PoissonVars
• PAD : CLGradientBase
• Paint() : Paint
• paintSchemeToEnum() : CCellDesignerImporter
• Parameter : CXMLHandler
• PARAMETER_KISAO_MAP : SEDMLUtils
• PARAMETER_ROLE : CData
• PARAMETER_TYPE : CData
• PARAMETER_USED : CData
• PARAMETER_VALUE : CData
• ParameterDescription : CXMLHandler
• ParameterDescriptionHandler() : ParameterDescriptionHandler
• ParameterEstimation : CSensProblem
• ParameterGroup : CXMLHandler
• ParameterGroupHandler() : ParameterGroupHandler
• ParameterHandler() : ParameterHandler
• parameterMissing : CQIconResource
• parameterModified : CQIconResource
• parameterObsolete : CQIconResource
• Parameters() : CCopasiSpringLayout::Parameters
• ParameterText : CXMLHandler
• ParameterTextHandler() : ParameterTextHandler
• parent() : CIndexedPriorityQueue , CMathDependencyNodeIterator
• parentContextPtr() : CNodeContextIterator< Node, Context >
• parse() : CEvaluationTree , CExpatTemplate< CType > , copasi::COptionParser , CRDFParser
• parse_element() : copasi::COptionParser
• parse_long_option() : copasi::COptionParser
• parse_short_option() : copasi::COptionParser
• parse_value() : copasi::COptionParser
• parseBounds() : CCellDesignerImporter
• parseBoxSize() : CCellDesignerImporter
• parseBuffer() : CExpatTemplate< CType >
• parseCompartmentAlias() : CCellDesignerImporter
• parseCompartmentAnnotation() : CCellDesignerImporter
• parseConnectScheme() : CCellDesignerImporter
• parseContent() : ResultParser
• parseDashArray() : CLGraphicalPrimitive1D
• parseDoubleLine() : CCellDesignerImporter
• parseEditPoints() : CCellDesignerImporter
• parseExtraLink() : CCellDesignerImporter
• parseExtraLinks() : CCellDesignerImporter
• parseFile() : ResultParser
• parseItem() : ResultParser
• parseLine() : CCellDesignerImporter
• parseLineDirection() : CCellDesignerImporter
• parseLinkTarget() : CCellDesignerImporter
• parseModelDisplay() : CCellDesignerImporter
• parsePaint() : CCellDesignerImporter
• parsePoint() : CCellDesignerImporter
• parsePointsString() : CCellDesignerImporter
• parseProteinModification() : CCellDesignerImporter
• parseProteins() : CCellDesignerImporter
• parser_state : copasi::COptionParser
• parseReactionAnnotation() : CCellDesignerImporter
• parseReactionElements() : CCellDesignerImporter
• parseReactionModification() : CCellDesignerImporter
• parseReactionModifications() : CCellDesignerImporter
• parseSBML() : SBMLImporter
• parseSEDML() : SEDMLImporter
• parseSpeciesAlias() : CCellDesignerImporter
• parseSpeciesAnnotation() : CCellDesignerImporter
• parseSpeciesIdentity() : CCellDesignerImporter
• parseSpeciesModification() : CCellDesignerImporter
• parseSpeciesState() : CCellDesignerImporter
• parseStream() : ResultParser
• parseTransformation() : CLTransformation2D , CLTransformation
• parseUsualView() : CCellDesignerImporter
• parseValue() : ResultParser
• PartitioningStrategy : CHybridMethodODE45
• PartitioningStrategyType : CHybridMethodODE45
• partitionSystem() : CHybridMethod , CHybridMethodODE45
• Path : CRDFPredicate
• pause : CQIconResource
• pBoundingBox : CXMLParserData
• pCheckTriplet : CRDFGraphConverter::sChange
• pCompartmentGlyph : CXMLParserData
• pCurrentChannelSpec : CXMLParserData
• pCurrentLayout : CXMLParserData
• pCurrentModelParameter : CXMLParserData
• pCurrentParameter : CXMLParserData
• pCurrentPlot : CXMLParserData
• pCurrentPlotItem : CXMLParserData
• pCurrentSBMLDocument : CDataModel::CContent
• pCurrentSEDMLDocument : CDataModel::CContent
• pCurrentTask : CXMLParserData
• pCurrentUnitDefinition : CXMLParserData
• pCurve : CXMLParserData
• pDataModel : CXMLParserData
• pDelayLag : CMath::sPointers
• pDelayLagObject : CMath::sPointers
• pDelayValue : CMath::sPointers
• pDelayValueObject : CMath::sPointers
• pDependentMasses : CMath::sPointers
• pDependentMassesObject : CMath::sPointers
• pdest : dlsa01
• pDimensions : CXMLParserData
• pDiscontinuous : CMath::sPointers , CMathContainer::sDiscontinuous
• pDiscontinuousObject : CMath::sPointers
• pdlast : dlsa01
• pdnorm : dlsa01
• peekAhead() : CLsodaMethod2 , CLsodaMethod , CRadau5Method , CTimeSensLsodaMethod
• peekFirstMessage() : CCopasiMessage
• peekLastMessage() : CCopasiMessage
• pEllipse : CXMLParserData
• performRankTest() : CBitPatternMethod
• PERSISTENT_TRIGGER : CData
• peta : CBaseUnit
• pEvent : CMathContainer::sDiscontinuous , CXMLParserData
• pEventAssignment : CXMLParserData
• pEventAssignments : CMath::sPointers
• pEventAssignmentsObject : CMath::sPointers
• pEventDelays : CMath::sPointers
• pEventDelaysObject : CMath::sPointers
• pEventPriorities : CMath::sPointers
• pEventPrioritiesObject : CMath::sPointers
• pEventRoots : CMath::sPointers
• pEventRootsObject : CMath::sPointers
• pEventRootStates : CMath::sPointers
• pEventRootStatesObject : CMath::sPointers
• pEventTriggers : CMath::sPointers
• pEventTriggersObject : CMath::sPointers
• pExperiment : CExperimentFileInfo::CExperimentInfo
• pExtensiveNoise : CMath::sPointers
• pExtensiveNoiseObject : CMath::sPointers
• pExtensiveRates : CMath::sPointers
• pExtensiveRatesObject : CMath::sPointers
• pExtensiveValues : CMath::sPointers
• pExtensiveValuesObject : CMath::sPointers
• pFastParticipationIndexAnn : CCSPMethod
• pFastReactionPointerAnn : CCSPMethod
• pFastReactionPointerNormedAnn : CCSPMethod
• pFluxes : CMath::sPointers
• pFluxesObject : CMath::sPointers
• pFunction : CXMLParserData
• pFunctionList : CXMLParserData
• pFunctionVariable : CXMLParserData
• pGeneralGlyph : CXMLParserData
• pGradient : CXMLParserData
• pGroup : CXMLParserData
• pGUI : CDataModel::CContent , CXMLParserData
• phi() : COptMethodGASR , COptMethodSRES
• physical : CModel
• pick() : CPermutation
• pico : CBaseUnit
• pImage : CXMLParserData
• pImportanceIndexAnn : CCSPMethod
• pImportanceIndexNormedRowAnn : CCSPMethod
• pInitialEventTriggers : CMath::sPointers
• pInitialEventTriggersObject : CMath::sPointers
• pInitialExtensiveRates : CMath::sPointers
• pInitialExtensiveRatesObject : CMath::sPointers
• pInitialExtensiveValues : CMath::sPointers
• pInitialExtensiveValuesObject : CMath::sPointers
• pInitialFluxes : CMath::sPointers
• pInitialFluxesObject : CMath::sPointers
• pInitialIntensiveRates : CMath::sPointers
• pInitialIntensiveRatesObject : CMath::sPointers
• pInitialIntensiveValues : CMath::sPointers
• pInitialIntensiveValuesObject : CMath::sPointers
• pInitialParticleFluxes : CMath::sPointers
• pInitialParticleFluxesObject : CMath::sPointers
• pInitialTotalMasses : CMath::sPointers
• pInitialTotalMassesObject : CMath::sPointers
• pIntensiveNoise : CMath::sPointers
• pIntensiveNoiseObject : CMath::sPointers
• pIntensiveRates : CMath::sPointers
• pIntensiveRatesObject : CMath::sPointers
• pIntensiveValues : CMath::sPointers
• pIntensiveValuesObject : CMath::sPointers
• PJAC() : PJAC
• PJACFunctor() : PJACFunctor< CType >
• PLAIN : CRDFLiteral
• play : CQIconResource
• playerKill : CQIconResource
• playerPause : CQIconResource
• playerStart : CQIconResource
• playerStop : CQIconResource
• pLayoutList : CXMLParserData
• pLineEnding : CXMLParserData
• pLineSegment : CXMLParserData
• pListOfCurveElements : CXMLParserData
• pListOfLayouts : CDataModel::CContent
• PLOT : CCopasiTask
• plot2d : CPlotItem
• PLOT_ITEM_TYPE : CData
• PLOT_TYPE : CData
• plotData() : CQBarChart
• PlotItem : CXMLHandler
• PlotItemHandler() : PlotItemHandler
• PlotSpecification : CXMLHandler
• PlotSpecificationHandler() : PlotSpecificationHandler
• plus() : CEvaluationNodeFunction
• pMetaboliteGlyph : CXMLParserData
• pMetaboliteReferenceGlyph : CXMLParserData
• pMethod : CHybridMethodODE45::Data , CLayoutEngine::Data , CLsodaMethod2::Data , CLsodaMethod::Data , CLyapWolfMethod::Data , CRadau5Method::Data , CTimeSensLsodaMethod::Data
• pModel : CDataModel::CContent , CXMLParserData
• pNewObject : CMath::sRelocate
• pNewValue : CMath::sRelocate
• pObject : CMathContainer::sSize , CRDFTriplet
• pObjectEnd : CMath::sRelocate
• pObjectStart : CMath::sRelocate
• Point : CXMLHandler
• PointHandler() : PointHandler
• pOldMetabolites : CDataModel
• pOldObject : CMath::sRelocate
• pOldValue : CMath::sRelocate
• Polygon : CXMLHandler
• PolygonHandler() : PolygonHandler
• popData() : CDataModel
• popElementHandler() : CXMLParser
• Position : CXMLHandler
• POSITION_2V : CCopasiSpringLayout::UpdateAction
• positionToCompartmentToEnum() : CCellDesignerImporter
• positionToEnum() : CCellDesignerImporter
• positive : CFunctionAnalyzer::CValue
• POSITIVE : CFunctionAnalyzer
• postprocessTextGlyph() : SBMLDocumentLoader
• potEdge() : CCopasiSpringLayout
• potGeneralEdge() : CCopasiSpringLayout
• potReactionCompartment() : CCopasiSpringLayout
• potReactionReaction() : CCopasiSpringLayout
• potSecondOrderEdge() : CCopasiSpringLayout
• potSpeciesCompartment() : CCopasiSpringLayout
• potSpeciesReaction() : CCopasiSpringLayout
• potSpeciesSpecies() : CCopasiSpringLayout
• power() : CDerive
• pp : CRandom::PoissonVars
• pParticipationIndexAnn : CCSPMethod
• pParticipationIndexNormedColumnAnn : CCSPMethod
• pParticipationIndexNormedRowAnn : CCSPMethod
• pParticleFluxes : CMath::sPointers
• pParticleFluxesObject : CMath::sPointers
• pPlotDefinitionList : CDataModel::CContent
• pPlotList : CXMLParserData
• pPolygon : CXMLParserData
• pPosition : CXMLParserData
• pPropensities : CMath::sPointers
• pPropensitiesObject : CMath::sPointers
• PQNode() : PQNode
• pRadicalPointerAnn : CCSPMethod
• prC_INT322() : CPraxis
• pReacSlowSpacePrintAnn : CILDMMethod
• pReaction : CXMLParserData
• pReactionGlyph : CXMLParserData
• pReactionNoise : CMath::sPointers
• pReactionNoiseObject : CMath::sPointers
• pReactionParticleNoise : CMath::sPointers
• pReactionParticleNoiseObject : CMath::sPointers
• preCompileTable() : CReportDefinition
• pRectangle : CXMLParserData
• PreDefined : CEvaluationTree
• Predicate : CRDFTriplet
• Predicate2AllowedLocationsAbsolute : CRDFPredicate
• Predicate2AllowedLocationsRelative : CRDFPredicate
• Predicate2Triplet : CRDFGraph
• Predicate2TripletConstRange : CRDFGraph
• Predicate2TripletRange : CRDFGraph
• PredicateDisplayName : CRDFPredicate
• PredicateURI : CRDFPredicate
• preferences : CQIconResource
• prefixFromScale() : CBaseUnit
• pRenderCurve : CXMLParserData
• pRenderInformation : CXMLParserData
• prepareElasticity() : CModel
• pReport : CXMLParserData
• pReportDefinitionList : CDataModel::CContent
• pReportList : CXMLParserData
• preprocess() : CODEExporter , CODEExporterC
• preprocessNode() : SBMLImporter
• Prerequisites : CMathDependencyNodeIterator
• prerequisitsContains() : CDataObject
• prettyPrint() : CUnit
• print() : CAnalyticsProblem , CArrayElementReference , CCopasiMethod , CCopasiParameter , CCopasiParameterGroup , CCopasiProblem , CCopasiTask::CDescription , CCopasiTask::CResult , CCopasiTaskStatus , CCopasiTimer , CCrossSectionProblem , CDataArray , CDataObject , CDataObjectReference< CType > , CDataString , CDataVectorReference< CType > , CEigen , CFitProblem , CLayout , CLCompartmentGlyph , CLGeneralGlyph , CLGlyphWithCurve , CLGraphicalObject , CLMetabGlyph , CLMetabReferenceGlyph , CLNAProblem , CLReactionGlyph , CLReferenceGlyph , CLTextGlyph , CMathObject , CMCAProblem , CObjectInterface , COptPopulationMethod , COptProblem , COscillationProblem , CSensItem , CSensProblem , CSensTask , CSteadyStateTask
• printBody() : CReport
• printDebug() : CMathEventQueue , CReaction
• printFooter() : CReport
• printHeader() : CReport
• printObjectSet() : CTimeSensMethod
• printRecursively() : CDataArray , CEvaluationNode
• printResult() : CCopasiMethod , CCopasiProblem , CCSPMethod , CEFMProblem , CExperiment , CFitProblem , CILDMMethod , CILDMModifiedMethod , CLNAProblem , CLNATask , CLyapProblem , CLyapTask , CMCAProblem , CMCATask , CMoietiesProblem , COptProblem , COscillationProblem , CSensProblem , CTrajectoryProblem , CTSSAProblem
• PrintSedMLTasks : copasi::option_locations , copasi::options
• printTitle() : CReportTable
• printUpdateSeq() : CTimeSensMethod
• PRIORITY_EXPRESSION : CData
• PriorityExpression : CXMLHandler
• PROBLEM : CData
• Problem : CXMLHandler
• ProblemCheckfailed : CCopasiTaskStatus
• ProccessingInstruction : CProcessReport
• proceed() : CProcessReport , CProcessReportLevel
• process() : CAnalyticsMethod , CAnalyticsTask , CCopasiTask , CCrossSectionMethod , CCrossSectionTask , CEFMTask , CFitTask , CLNAMethod , CLNATask , CLyapTask , CMathEventQueue::CAction , CMathEventQueue , CMCAMethod , CMCATask , CMoietiesMethod , CMoietiesTask , COptTask , COscillationTask , CScanTask , CSensMethod , CSensTask , CSSAMethod , CSteadyStateMethod , CSteadyStateTask , CTimeSensTask , CTrajectoryTask , CTSSATask
• processCallback() : CScanTask
• processEnd() : AdditionalGraphicalObjectHandler , AssignmentHandler , BoundingBoxHandler , CallParameterHandler , ChannelSpecHandler , CharacterDataHandler , ColorDefinitionHandler , CommentHandler , CompartmentGlyphHandler , CompartmentHandler , ConstantHandler , COPASIHandler , CubicBezierHandler , CurveHandler , CXMLHandler , DimensionsHandler , EllipseHandler , EventHandler , FunctionHandler , GradientStopHandler , GroupHandler , GUIHandler , ImageHandler , InitialStateHandler , KineticLawHandler , LayoutHandler , LinearGradientHandler , LineEndingHandler , LineSegmentHandler , ListOfCurveSegmentsHandler , ListOfGradientDefinitionsHandler , ListOfHandler , ListOfLayoutsHandler , MathMLHandler , MetaboliteGlyphHandler , MetaboliteHandler , MetaboliteReferenceGlyphHandler , MethodHandler , MiriamAnnotationHandler , ModelHandler , ModelParameterGroupHandler , ModelParameterHandler , ModelParameterSetHandler , ModelValueHandler , ModifierHandler , ObjectHandler , ParameterDescriptionHandler , ParameterGroupHandler , ParameterHandler , ParameterTextHandler , PlotItemHandler , PlotSpecificationHandler , PointHandler , PolygonHandler , ProductHandler , RadialGradientHandler , ReactionGlyphHandler , ReactionHandler , RectangleHandler , RenderCurveElementHandler , RenderCurveHandler , RenderInformationHandler , RenderTextHandler , ReportDefinitionHandler , ReportSectionHandler , ReportTargetHandler , SBMLMapHandler , SliderHandler , SourceParameterHandler , StateTemplateHandler , StateTemplateVariableHandler , StyleHandler , SubstrateHandler , TableHandler , TaskHandler , TextGlyphHandler , UnitDefinitionHandler , UNKNOWNHandler , UnsupportedAnnotationHandler
• processingInstructionHandler() : CExpatTemplate< CType >
• processingMode() : CNodeContextIterator< Node, Context >
• processInternal() : CNewtonMethod , CSteadyStateMethod
• processNewton() : CNewtonMethod
• processQueue() : CMathContainer
• processRoots() : CMathContainer
• processStart() : AdditionalGraphicalObjectHandler , AssignmentHandler , BoundingBoxHandler , CallParameterHandler , ChannelSpecHandler , CharacterDataHandler , ColorDefinitionHandler , CommentHandler , CompartmentGlyphHandler , CompartmentHandler , ConstantHandler , COPASIHandler , CTimeSensTask , CTrajectoryTask , CTSSATask , CubicBezierHandler , CurveHandler , CXMLHandler , DimensionsHandler , EllipseHandler , EventHandler , FunctionHandler , GradientStopHandler , GroupHandler , GUIHandler , ImageHandler , InitialStateHandler , KineticLawHandler , LayoutHandler , LinearGradientHandler , LineEndingHandler , LineSegmentHandler , ListOfCurveSegmentsHandler , ListOfGradientDefinitionsHandler , ListOfHandler , ListOfLayoutsHandler , MathMLHandler , MetaboliteGlyphHandler , MetaboliteHandler , MetaboliteReferenceGlyphHandler , MethodHandler , MiriamAnnotationHandler , ModelHandler , ModelParameterGroupHandler , ModelParameterHandler , ModelParameterSetHandler , ModelValueHandler , ModifierHandler , ObjectHandler , ParameterDescriptionHandler , ParameterGroupHandler , ParameterHandler , ParameterTextHandler , PlotItemHandler , PlotSpecificationHandler , PointHandler , PolygonHandler , ProductHandler , RadialGradientHandler , ReactionGlyphHandler , ReactionHandler , RectangleHandler , RenderCurveElementHandler , RenderCurveHandler , RenderInformationHandler , RenderTextHandler , ReportDefinitionHandler , ReportSectionHandler , ReportTargetHandler , SBMLMapHandler , SliderHandler , SourceParameterHandler , StateTemplateHandler , StateTemplateVariableHandler , StyleHandler , SubstrateHandler , TableHandler , TaskHandler , TextGlyphHandler , UnitDefinitionHandler , UNKNOWNHandler , UnsupportedAnnotationHandler
• processStep() : CTimeSensTask , CTrajectoryTask , CTSSATask
• processTrajectory() : CTrajectoryTask
• processValues() : CTrajectoryTask
• PRODUCT : CChemEq , CLMetabReferenceGlyph
• product() : CLyapWolfMethod
• Product : CXMLHandler
• ProductHandler() : ProductHandler
• progress() : CProcessReport , CProcessReportLevel
• progressItem() : CProcessReport , CProcessReportLevel
• Property : CData
• PropertyName : CData
• Protein() : Protein
• ProteinModification() : ProteinModification
• PROVIDED : CSBMLunitInformation
• PS_info_informants : COptLogItem
• PS_no_particle_improved : COptLogItem
• PS_stddev_lower_than_tol_termination : COptLogItem
• PS_usrdef_error_swarm_size : COptLogItem
• pSBML : SBMLUnitSupport::SUnitInfo
• pSlowParticipationIndexAnn : CCSPMethod
• pSSE4support : CJitCompiler
• pStats : CAnalyticsTask
• pStatsTime : CAnalyticsTask
• pStyle : CXMLParserData
• pSubject : CRDFTriplet
• pTaskList : CDataModel::CContent , CXMLParserData
• pText : CXMLParserData
• pTextGlyph : CXMLParserData
• pTmp1 : CILDMMethod
• pTMP1 : CILDMMethod
• pTmp1 : CILDMModifiedMethod
• pTMP1PrintAnn : CILDMMethod
• pTMP2 : CILDMMethod
• pTmp2 : CILDMMethod , CILDMModifiedMethod
• pTMP2PrintAnn : CILDMMethod
• pTMP3 : CILDMMethod
• pTmp3 : CILDMMethod , CILDMModifiedMethod
• pTMP3PrintAnn : CILDMMethod
• pTmp4 : CILDMMethod , CILDMModifiedMethod
• pTmp5 : CILDMMethod
• pTotalMasses : CMath::sPointers
• pTotalMassesObject : CMath::sPointers
• pTransitionTime : CMath::sPointers
• pTransitionTimeObject : CMath::sPointers
• pUnit : CUnitParserBase::Data
• pUnitDefinitionImportList : CXMLParserData
• pUnmappedObject : CFunctionParameterMap
• purgeUnusedUserDefinedFunctions() : CFunctionDB
• push() : CSBMLunitInterface::CEnvironmentInformation
• push_back() : CCallParameters< Type >
• push_front() : CStepMatrixColumn
• pushAllTransientValues() : CMathContainer
• pushData() : CDataModel
• pushElementHandler() : CXMLParser
• pushInitialState() : CMathContainer
• pushPair() : CIndexedPriorityQueue
• pushState() : CMathContainer
• pValue : CMathContainer::sSize
• pValueEnd : CMath::sRelocate
• pValueStart : CMath::sRelocate
• pVersion : CXMLParserData
• pVfastSpacePrintAnn : CILDMMethod , CILDMModifiedMethod
• pVslowMetabPrintAnn : CILDMMethod , CILDMModifiedMethod
• pVslowPrintAnn : CILDMMethod , CILDMModifiedMethod
• pVslowSpacePrintAnn : CILDMMethod , CILDMModifiedMethod
• px : CRandom::PoissonVars
• py : CRandom::PoissonVars