MiriamAnnotationHandler Class Reference

#include <MiriamAnnotationHandler.h>

Inheritance diagram for MiriamAnnotationHandler:

Public Member Functions
virtual void	end (const XML_Char *pszName)
	MiriamAnnotationHandler (CXMLParser &parser, CXMLParserData &data)
virtual void	start (const XML_Char *pszName, const XML_Char **papszAttrs)
virtual	~MiriamAnnotationHandler ()
Public Member Functions inherited from CXMLHandler
	CXMLHandler (CXMLParser &parser, CXMLParserData &data, const Type &type)
virtual	~CXMLHandler ()

Protected Member Functions
virtual sProcessLogic *	getProcessLogic () const
virtual bool	processEnd (const XML_Char *pszName)
virtual CXMLHandler *	processStart (const XML_Char *pszName, const XML_Char **papszAttrs)
Protected Member Functions inherited from CXMLHandler
void	addFix (const std::string &key, CDataObject *pObject)
std::string	getElementName (const Type &type) const
std::string	getExpectedElements (const Type &type) const
CXMLHandler *	getHandler (const Type &type)
void	init ()

Private Member Functions
	MiriamAnnotationHandler ()

Private Attributes
std::stack< bool >	mElementEmpty
std::ostringstream	mRDF

Additional Inherited Members
Public Types inherited from CXMLHandler
enum	Type {   BEFORE = 0 , AFTER , UNKNOWN , AdditionalGraphicalObject ,   Assignment , BasePoint1 , BasePoint2 , Body ,   BoundingBox , CallParameter , ChannelSpec , CharacterData ,   ColorDefinition , Comment , Compartment , CompartmentGlyph ,   Constant , COPASI , CubicBezier , Curve ,   CurveSegment , DelayExpression , Dimensions , Ellipse ,   End , Event , Expression , Footer ,   Function , GradientStop , Group , GUI ,   Header , Image , InitialExpression , InitialState ,   KineticLaw , Layout , LinearGradient , LineEnding ,   LineSegment , ListOfAdditionalGraphicalObjects , ListOfAssignments , ListOfCallParameters ,   ListOfChannels , ListOfColorDefinitions , ListOfCompartmentGlyphs , ListOfCompartments ,   ListOfConstants , ListOfCurveSegments , ListOfElements , ListOfEvents ,   ListOfFunctions , ListOfGlobalRenderInformation , ListOfGradientDefinitions , ListOfLayouts ,   ListOfLineEndings , ListOfMetabGlyphs , ListOfMetaboliteReferenceGlyphs , ListOfMetabolites ,   ListOfModelParameterSets , ListOfModelValues , ListOfModifiers , ListOfParameterDescriptions ,   ListOfPlotItems , ListOfPlots , ListOfProducts , ListOfReactionGlyphs ,   ListOfReactions , ListOfRenderInformation , ListOfReports , ListOfSliders ,   ListOfStyles , ListOfSubstrates , ListOfTasks , ListOfTextGlyphs ,   ListOfUnitDefinitions , ListOfUnsupportedAnnotations , MathML , Metabolite ,   MetaboliteGlyph , MetaboliteReferenceGlyph , Method , MiriamAnnotation ,   Model , ModelParameter , ModelParameterGroup , ModelParameterSet ,   ModelValue , Modifier , NoiseExpression , Object ,   Parameter , ParameterDescription , ParameterGroup , ParameterText ,   PlotItem , PlotSpecification , Point , Polygon ,   Position , PriorityExpression , Problem , Product ,   RadialGradient , Reaction , ReactionGlyph , Rectangle ,   RenderCurve , RenderCurveElement , RenderInformation , RenderText ,   ReportDefinition , ReportSection , ReportTarget , SBMLMap ,   SBMLReference , Slider , SourceParameter , Start ,   StateTemplate , StateTemplateVariable , Style , Substrate ,   Table , Task , Text , TextGlyph ,   TriggerExpression , Unit , UnitDefinition , UnsupportedAnnotation ,   HANDLER_COUNT }
Protected Attributes inherited from CXMLHandler
std::pair< Type, Type >	mCurrentElement
std::map< std::string, std::pair< Type, Type > >	mElementName2Type
Type	mElementType
const Type	mHandlerType
std::pair< Type, Type >	mLastKnownElement
size_t	mLevel
CXMLParserData *	mpData
CXMLParser *	mpParser
std::map< Type, std::set< Type > >	mValidElements

Constructor & Destructor Documentation

MiriamAnnotationHandler() [1/2]

MiriamAnnotationHandler::MiriamAnnotationHandler ( )

private

MiriamAnnotationHandler() [2/2]

MiriamAnnotationHandler::MiriamAnnotationHandler	(	CXMLParser &	parser,
		CXMLParserData &	data
	)

Constructor

Parameters

CXMLParser	& parser
CXMLParserData	& data

Replace MiriamAnnotation with the name type of the handler and implement the three methods below.

References CXMLHandler::init().

~MiriamAnnotationHandler()

MiriamAnnotationHandler::~MiriamAnnotationHandler ( )

virtual

Destructor

Member Function Documentation

end()

void MiriamAnnotationHandler::end ( const XML_Char *  pszName )

virtual

End element handler

Parameters

const

XML_Char *pszName

Reimplemented from CXMLHandler.

References CXMLHandler::mLevel, CXMLHandler::mpParser, CXMLParser::onEndElement(), CXMLParser::popElementHandler(), and processEnd().

getProcessLogic()

CXMLHandler::sProcessLogic * MiriamAnnotationHandler::getProcessLogic ( ) const

protectedvirtual

Retrieve the structure containing the process logic for the handler.

Returns

sElementInfo *

Implements CXMLHandler.

References CXMLHandler::AFTER, CXMLHandler::BEFORE, CXMLHandler::HANDLER_COUNT, and CXMLHandler::MiriamAnnotation.

processEnd()

bool MiriamAnnotationHandler::processEnd ( const XML_Char *  pszName )

protectedvirtual

Process the end of an element

Parameters

const

XML_Char *pszName

Returns

bool finished

Implements CXMLHandler.

References CXMLHandler::CharacterData, CXMLParserData::CharacterData, CXMLParser::enableCharacterDataHandler(), CCopasiXMLInterface::encode(), CXMLParser::getCharacterData(), mElementEmpty, CXMLHandler::mLevel, CXMLHandler::mpData, CXMLHandler::mpParser, and mRDF.

Referenced by end().

processStart()

CXMLHandler * MiriamAnnotationHandler::processStart ( const XML_Char *  pszName, const XML_Char **  papszAttrs  )

protectedvirtual

Process the start of an element

Parameters

const	XML_Char *pszName
const	XML_Char **papszAttrs

Returns

CXMLHandler * pHandlerToCall

Implements CXMLHandler.

References CCopasiXMLInterface::attribute, CXMLParser::enableCharacterDataHandler(), CCopasiXMLInterface::encode(), CXMLParser::getCharacterData(), mElementEmpty, CXMLHandler::mLevel, CXMLHandler::mpParser, and mRDF.

Referenced by start().

start()

void MiriamAnnotationHandler::start ( const XML_Char *  pszName, const XML_Char **  papszAttrs  )

virtual

Start element handler

Parameters

const	XML_Char *pszName
const	XML_Char **papszAttrs

Reimplemented from CXMLHandler.

References CXMLHandler::mLevel, and processStart().

Member Data Documentation

mElementEmpty

std::stack< bool > MiriamAnnotationHandler::mElementEmpty

private

Information whether an element is empty

Referenced by processEnd(), and processStart().

mRDF

std::ostringstream MiriamAnnotationHandler::mRDF

private

String stream to handle RDF contents

Referenced by processEnd(), and processStart().

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The documentation for this class was generated from the following files:

• MiriamAnnotationHandler.h
• MiriamAnnotationHandler.cpp