COPASI API  4.40.278
File List
Here is a list of all files with brief descriptions:
 AdditionalGraphicalObjectHandler.cpp
 AdditionalGraphicalObjectHandler.h
 ArtisticLicense.h
 AssignmentHandler.cpp
 AssignmentHandler.h
 blas.h
 blaswrap.h
 BoundingBoxHandler.cpp
 BoundingBoxHandler.h
 CAbstractLayoutInterface.cpp
 CAbstractLayoutInterface.h
 CallParameterHandler.cpp
 CallParameterHandler.h
 CAnalyticsMethod.cpp
 CAnalyticsMethod.h
 CAnalyticsProblem.cpp
 CAnalyticsProblem.h
 CAnalyticsTask.cpp
 CAnalyticsTask.h
 CAnnotation.cpp
 CAnnotation.h
 CArray.cpp
 CArray.h
 CArrayElementReference.cpp
 CArrayElementReference.h
 CBaseUnit.cpp
 CBaseUnit.h
 CBiologicalDescription.cpp
 CBiologicalDescription.h
 CBitPatternMethod.cpp
 CBitPatternMethod.h
 CBitPatternTree.cpp
 CBitPatternTree.h
 CBitPatternTreeMethod.cpp
 CBitPatternTreeMethod.h
 CBitPatternTreeNode.cpp
 CBitPatternTreeNode.h
 CBrent.cpp
 CBrent.h
 CCallback.h
 CCallParameters.cpp
 CCallParameters.h
 CCellDesignerImporter.cpp
 CCellDesignerImporter.h
 CChemEq.cpp
 CChemEq.h
 CChemEqElement.cpp
 CChemEqElement.h
 CChemEqInterface.cpp
 CChemEqInterface.h
 CChemEqParser.cpp
 CChemEqParser.h
 CChemEqParser_lex.cpp
 CChemEqParser_yacc.cpp
 CCommonName.cpp
 CCommonName.h
 CCompartment.cpp
 CCompartment.h
 CConfigurationFile.cpp
 CConfigurationFile.h
 CConstants.cpp
 CConstants.h
 CContext.cpp
 CContext.h
 CCopasiException.cpp
 CCopasiException.h
 CCopasiMessage.cpp
 CCopasiMessage.h
 CCopasiMethod.cpp
 CCopasiMethod.h
 CCopasiNode.h
 CCopasiParameter.cpp
 CCopasiParameter.h
 CCopasiParameterGroup.cpp
 CCopasiParameterGroup.h
 CCopasiProblem.cpp
 CCopasiProblem.h
 CCopasiSpringLayout.cpp
 CCopasiSpringLayout.h
 CCopasiTask.cpp
 CCopasiTask.h
 CCopasiTaskStatus.cpp
 CCopasiTaskStatus.h
 CCopasiTree.h
 CCopasiXML.cppImplementation file of class CCopasiXML
 CCopasiXML.h
 CCopasiXMLInterface.cpp
 CCopasiXMLInterface.h
 CCore.cpp
 CCore.h
 CCreator.cpp
 CCreator.h
 CCrossSectionMethod.cpp
 CCrossSectionMethod.h
 CCrossSectionProblem.cpp
 CCrossSectionProblem.h
 CCrossSectionTask.cpp
 CCrossSectionTask.h
 CCSPMethod.cpp
 CCSPMethod.h
 CData.cpp
 CData.h
 CDataArray.cpp
 CDataArray.hHeader file of class CArrayAnnotation
 CDataContainer.cppImplementation file of class CDataContainer
 CDataContainer.hHeader file of class CDataContainer
 CDataHandler.cpp
 CDataHandler.h
 CDataModel.cpp
 CDataModel.h
 CDataObject.cpp
 CDataObject.h
 CDataObjectMap.cpp
 CDataObjectMap.h
 CDataObjectReference.h
 CDataString.cpp
 CDataString.h
 CDataTimer.cpp
 CDataTimer.h
 CDataValue.cpp
 CDataValue.h
 CDataVector.h
 CDependencyGraph.cpp
 CDependencyGraph.h
 CDerive.cpp
 CDerive.h
 CDirEntry.cpp
 CDirEntry.h
 CEFMAlgorithm.cpp
 CEFMAlgorithm.h
 CEFMMethod.cpp
 CEFMMethod.h
 CEFMProblem.cpp
 CEFMProblem.h
 CEFMTask.cpp
 CEFMTask.h
 CEigen.cpp
 CEigen.h
 CEnumAnnotation.h
 CEvaluationLexer.h
 CEvaluationLexer_lex.cpp
 CEvaluationNode.cpp
 CEvaluationNode.h
 CEvaluationNodeCall.cpp
 CEvaluationNodeCall.h
 CEvaluationNodeChoice.cpp
 CEvaluationNodeChoice.h
 CEvaluationNodeConstant.cpp
 CEvaluationNodeConstant.h
 CEvaluationNodeDelay.cpp
 CEvaluationNodeDelay.h
 CEvaluationNodeFunction.cpp
 CEvaluationNodeFunction.h
 CEvaluationNodeLogical.cpp
 CEvaluationNodeLogical.h
 CEvaluationNodeNumber.cpp
 CEvaluationNodeNumber.h
 CEvaluationNodeObject.cpp
 CEvaluationNodeObject.h
 CEvaluationNodeOperator.cpp
 CEvaluationNodeOperator.h
 CEvaluationNodeStructure.cpp
 CEvaluationNodeStructure.h
 CEvaluationNodeUnit.cpp
 CEvaluationNodeUnit.h
 CEvaluationNodeVariable.cpp
 CEvaluationNodeVariable.h
 CEvaluationNodeVector.cpp
 CEvaluationNodeVector.h
 CEvaluationNodeWhiteSpace.cpp
 CEvaluationNodeWhiteSpace.h
 CEvaluationParser_yacc.cpp
 CEvaluationTree.cpp
 CEvaluationTree.h
 CEvent.cpp
 CEvent.hHeader file of class CEvent
 CExpat.cpp
 CExpat.h
 CExperiment.cpp
 CExperiment.h
 CExperimentFileInfo.cpp
 CExperimentFileInfo.h
 CExperimentObjectMap.cpp
 CExperimentObjectMap.h
 CExperimentSet.cpp
 CExperimentSet.h
 CExpression.cppImplementation file of class CExpression
 CExpression.hHeader file of class CExpression
 CExpressionGenerator.cpp
 CExpressionGenerator.h
 CFitItem.cpp
 CFitItem.h
 CFitProblem.cpp
 CFitProblem.h
 CFitTask.cpp
 CFitTask.h
 CFixLocalReactionParameters.cpp
 CFixLocalReactionParameters.h
 CFlags.h
 CFluxMode.cpp
 CFluxMode.h
 CFluxScore.cpp
 CFluxScore.h
 CFunction.cpp
 CFunction.h
 CFunctionAnalyzer.cpp
 CFunctionAnalyzer.h
 CFunctionDB.cpp
 CFunctionDB.h
 CFunctionParameter.cpp
 CFunctionParameter.h
 CFunctionParameters.cpp
 CFunctionParameters.h
 ChannelSpecHandler.cpp
 ChannelSpecHandler.h
 CharacterDataHandler.cpp
 CharacterDataHandler.h
 CHybridMethod.cpp
 CHybridMethod.h
 CHybridMethodODE45.cpp
 CHybridMethodODE45.h
 CHybridNextReactionLSODAMethod.cpp
 CHybridNextReactionLSODAMethod.h
 CHybridNextReactionRKMethod.cpp
 CHybridNextReactionRKMethod.h
 CILDMMethod.cpp
 CILDMMethod.h
 CILDMModifiedMethod.cpp
 CILDMModifiedMethod.h
 CIndexedPriorityQueue.cpp
 CIndexedPriorityQueue.h
 CInfo.cpp
 CInfo.h
 CInternalSolver.cpp
 CInternalSolver.h
 CJitCompiler.cpp
 CJitCompiler.h
 CJitCompilerImplementation.cpp
 CJitCompilerImplementation.h
 CJitExpression.cpp
 CJitExpression.h
 CKeyFactory.cpp
 CKeyFactory.h
 CKinFunction.cpp
 CKinFunction.h
 CLayout.cpp
 CLayout.h
 CLayoutEngine.cpp
 CLayoutEngine.h
 CLayoutInitializer.cpp
 CLayoutInitializer.h
 CLayoutState.cpp
 CLayoutState.h
 CLBase.cpp
 CLBase.h
 CLColorDefinition.cpp
 CLColorDefinition.h
 CLCurve.cpp
 CLCurve.h
 CLDefaultStyles.cpp
 CLDefaultStyles.h
 CLeastSquareSolution.cpp
 CLeastSquareSolution.h
 CLEllipse.cpp
 CLEllipse.h
 CLFontRendererBase.h
 CLGlobalRenderInformation.cpp
 CLGlobalRenderInformation.h
 CLGlobalStyle.cpp
 CLGlobalStyle.h
 CLGlyphs.cpp
 CLGlyphs.h
 CLGradientBase.cpp
 CLGradientBase.h
 CLGradientStop.cpp
 CLGradientStop.h
 CLGradientStops.cpp
 CLGradientStops.h
 CLGraphicalObject.cpp
 CLGraphicalObject.h
 CLGraphicalPrimitive1D.cpp
 CLGraphicalPrimitive1D.h
 CLGraphicalPrimitive2D.cpp
 CLGraphicalPrimitive2D.h
 CLGroup.cpp
 CLGroup.h
 CLImage.cpp
 CLImage.h
 CLImageTexturizer.cpp
 CLImageTexturizer.h
 CLinkMatrix.cpp
 CLinkMatrix.h
 CListOfLayouts.cpp
 CListOfLayouts.h
 CLLayoutRenderer.cpp
 CLLayoutRenderer.h
 CLLinearGradient.cpp
 CLLinearGradient.h
 CLLineEnding.cpp
 CLLineEnding.h
 CLLocalRenderInformation.cpp
 CLLocalRenderInformation.h
 CLLocalStyle.cpp
 CLLocalStyle.h
 CLNAMethod.cpp
 CLNAMethod.h
 CLNAProblem.cpp
 CLNAProblem.h
 CLNATask.cpp
 CLNATask.h
 CLocaleString.cpp
 CLocaleString.h
 CLPolygon.cpp
 CLPolygon.h
 CLRadialGradient.cpp
 CLRadialGradient.h
 CLReactionGlyph.cpp
 CLReactionGlyph.h
 CLRectangle.cpp
 CLRectangle.h
 CLRelAbsVector.cpp
 CLRelAbsVector.h
 CLRenderCubicBezier.cpp
 CLRenderCubicBezier.h
 CLRenderCurve.cpp
 CLRenderCurve.h
 CLRenderFlattener.cpp
 CLRenderFlattener.h
 CLRenderInformationBase.cpp
 CLRenderInformationBase.h
 CLRenderPoint.cpp
 CLRenderPoint.h
 CLRenderResolver.cpp
 CLRenderResolver.h
 CLRGBAColor.h
 CLSimpleImageTexturizer.cpp
 CLSimpleImageTexturizer.h
 CLSODA.cpp
 CLSODA.h
 CLsodaMethod.cpp
 CLsodaMethod.h
 CLsodaMethod2.cpp
 CLsodaMethod2.h
 CLSODAR.cpp
 CLSODAR.h
 CLStyle.cpp
 CLStyle.h
 CLText.cpp
 CLText.h
 CLTransformation.cpp
 CLTransformation.h
 CLTransformation2D.cpp
 CLTransformation2D.h
 CLUnresolvedReferenceException.cpp
 CLUnresolvedReferenceException.h
 CluX.cpp
 CluX.h
 CLyapMethod.cpp
 CLyapMethod.h
 CLyapProblem.cpp
 CLyapProblem.h
 CLyapTask.cpp
 CLyapTask.h
 CLyapWolfMethod.cpp
 CLyapWolfMethod.h
 CMassAction.cpp
 CMassAction.h
 CMathContainer.cpp
 CMathContainer.h
 CMathContext.cpp
 CMathContext.h
 CMathDelay.cpp
 CMathDelay.h
 CMathDependencyGraph.cpp
 CMathDependencyGraph.h
 CMathDependencyNode.cpp
 CMathDependencyNode.h
 CMathDependencyNodeIterator.cpp
 CMathDependencyNodeIterator.h
 CMathDerive.cpp
 CMathDerive.h
 CMathEnum.cpp
 CMathEnum.h
 CMathEvent.cpp
 CMathEvent.h
 CMathEventQueue.cpp
 CMathEventQueue.h
 CMathExpression.cpp
 CMathExpression.h
 CMathHistory.cpp
 CMathHistory.h
 CMathMLToTeX.cpp
 CMathMLToTeX.h
 CMathObject.cpp
 CMathObject.h
 CMathReaction.cpp
 CMathReaction.h
 CMathUpdateSequence.cpp
 CMathUpdateSequence.h
 CMatrix.h
 CMCAMethod.cpp
 CMCAMethod.h
 CMCAProblem.cpp
 CMCAProblem.h
 CMCATask.cpp
 CMCATask.h
 Cmd5.cpp
 Cmd5.h
 CMetab.cpp
 CMetab.h
 CMetabNameInterface.cpp
 CMetabNameInterface.h
 CMethodContext.h
 CMethodFactory.cpp
 CMethodFactory.h
 CMIRIAMResource.cpp
 CMIRIAMResource.h
 CMMLOutput.cpp
 CMMLOutput.h
 CModel.cpp
 CModel.h
 CModelAnalyzer.cpp
 CModelAnalyzer.h
 CModelExpansion.cpp
 CModelExpansion.h
 CModelMerging.cpp
 CModelMerging.h
 CModelMIRIAMInfo.cpp
 CModelMIRIAMInfo.h
 CModelParameter.cpp
 CModelParameter.h
 CModelParameterGroup.cpp
 CModelParameterGroup.h
 CModelParameterSet.cpp
 CModelParameterSet.h
 CModelValue.cppImplementation file of class CModelEntity and CModelValue
 CModelValue.hHeader file of class CModelEntity and CModelValue
 CModelVersion.cpp
 CModelVersion.h
 CModelVersionHierarchy.cpp
 CModelVersionHierarchy.h
 CModified.cpp
 CModified.h
 CMoietiesMethod.cpp
 CMoietiesMethod.h
 CMoietiesProblem.cpp
 CMoietiesProblem.h
 CMoietiesTask.cpp
 CMoietiesTask.h
 CMoiety.cpp
 CMoiety.h
 Cmt19937.cpp
 Cmt19937.h
 CNewtonMethod.cpp
 CNewtonMethod.h
 CNL2SOL.cpp
 CNL2SOL.h
 CNodeIterator.h
 CNodeK.cpp
 CNodeK.h
 CObjectInterface.cpp
 CObjectInterface.h
 CObjectLists.cpp
 CObjectLists.h
 CODEExporter.cpp
 CODEExporter.h
 CODEExporterBM.cpp
 CODEExporterBM.h
 CODEExporterC.cpp
 CODEExporterC.h
 CODEExporterXPPAUT.cpp
 CODEExporterXPPAUT.h
 ColorDefinitionHandler.cpp
 ColorDefinitionHandler.h
 CommentHandler.cpp
 CommentHandler.h
 common.cpp
 common.h
 CompartmentGlyphHandler.cpp
 CompartmentGlyphHandler.h
 CompartmentHandler.cpp
 CompartmentHandler.h
 ConstantHandler.cpp
 ConstantHandler.h
 ConverterASTNode.cpp
 ConverterASTNode.h
 copasi.h
 COPASIHandler.cpp
 COPASIHandler.h
 copasimathml.h
 CopasiModelTypes.h
 CopasiTaskTypes.h
 CopasiTime.cpp
 CopasiTime.h
 CopasiTypes.h
 CopasiVersion.h
 COptionParser.cpp
 COptionParser.h
 COptions.cpp
 COptions.h
 COptItem.cpp
 COptItem.h
 COptLog.cpp
 COptLog.h
 COptLogEntry.cpp
 COptLogEntry.h
 COptLogItem.cpp
 COptLogItem.h
 COptMethod.cpp
 COptMethod.h
 COptMethodCoranaWalk.cpp
 COptMethodCoranaWalk.h
 COptMethodDE.cpp
 COptMethodDE.h
 COptMethodEP.cpp
 COptMethodEP.h
 COptMethodGA.cpp
 COptMethodGA.h
 COptMethodGASR.cpp
 COptMethodGASR.h
 COptMethodHookeJeeves.cpp
 COptMethodHookeJeeves.h
 COptMethodLevenbergMarquardt.cpp
 COptMethodLevenbergMarquardt.h
 COptMethodNelderMead.cpp
 COptMethodNelderMead.h
 COptMethodNL2SOL.cpp
 COptMethodNL2SOL.h
 COptMethodPraxis.cpp
 COptMethodPraxis.h
 COptMethodPS.cpp
 COptMethodPS.h
 COptMethodSA.cpp
 COptMethodSA.h
 COptMethodSRES.cpp
 COptMethodSRES.h
 COptMethodSS.cpp
 COptMethodSS.h
 COptMethodStatistics.cpp
 COptMethodStatistics.h
 COptMethodSteepestDescent.cpp
 COptMethodSteepestDescent.h
 COptMethodTruncatedNewton.cpp
 COptMethodTruncatedNewton.h
 COptPopulationMethod.cpp
 COptPopulationMethod.h
 COptProblem.cpp
 COptProblem.h
 COptTask.cpp
 COptTask.h
 COscillationMethod.cpp
 COscillationMethod.h
 COscillationMethodIntegrate.cpp
 COscillationMethodIntegrate.h
 COscillationProblem.cpp
 COscillationProblem.h
 COscillationTask.cpp
 COscillationTask.h
 COutputAssistant.cpp
 COutputAssistant.h
 COutputDefinitionVector.cpp
 COutputDefinitionVector.h
 COutputHandler.cpp
 COutputHandler.h
 CParameterEstimationUtils.cpp
 CParameterEstimationUtils.h
 CPermutation.cpp
 CPermutation.h
 CPlotColors.cpp
 CPlotColors.h
 CPlotItem.cpp
 CPlotItem.h
 CPlotSpecification.cpp
 CPlotSpecification.h
 CPointerContext.h
 CPointerContextWithParent.h
 CPointerMathContext.h
 CPraxis.cpp
 CPraxis.h
 CProblemContext.h
 CProblemFactory.cpp
 CProblemFactory.h
 CProcessReport.cpp
 CProcessReport.h
 CProvenanceXMLWriter.cpp
 CProvenanceXMLWriter.h
 CQ3DBarsModifier.cpp
 CQ3DBarsModifier.h
 CQBaseWidget.cpp
 CQBaseWidget.h
 CQIconResource.cpp
 CQIconResource.h
 Cr250.cpp
 Cr250.h
 CRadau5.cpp
 CRadau5.h
 CRadau5Method.cpp
 CRadau5Method.h
 CRandom.cpp
 CRandom.h
 CRandomContext.h
 CRandomSearch.cpp
 CRandomSearch.h
 CRaptorInit.cpp
 CRaptorInit.h
 CRDFGraph.cpp
 CRDFGraph.h
 CRDFGraphConverter.cpp
 CRDFGraphConverter.h
 CRDFLiteral.cpp
 CRDFLiteral.h
 CRDFNode.cpp
 CRDFNode.h
 CRDFObject.cpp
 CRDFObject.h
 CRDFParser.cpp
 CRDFParser.h
 CRDFPredicate.cpp
 CRDFPredicate.h
 CRDFSubject.cpp
 CRDFSubject.h
 CRDFTriplet.cpp
 CRDFTriplet.h
 CRDFUtilities.cpp
 CRDFUtilities.h
 CRDFWriter.cpp
 CRDFWriter.h
 CReaction.cpp
 CReaction.h
 CReactionInterface.cpp
 CReactionInterface.h
 CReactionParameter.h
 CReadConfig.cpp
 CReadConfig.h
 CRealProblem.cpp
 CRealProblem.h
 CReference.cpp
 CReference.h
 CRegisteredCommonName.cpp
 CRegisteredCommonName.h
 CReport.cpp
 CReport.h
 CReportBody.cpp
 CReportBody.h
 CReportDefinition.cpp
 CReportDefinition.h
 CReportDefinitionVector.cpp
 CReportDefinitionVector.h
 CRootContainer.cpp
 CRootContainer.h
 CRootFinder.cpp
 CRootFinder.h
 CRungeKutta.cpp
 CRungeKutta.h
 CSBMLExporter.cpp
 CSBMLExporter.h
 CSBMLunit.cpp
 CSBMLunit.h
 CSBMLunitInterface.cpp
 CSBMLunitInterface.h
 CScanMethod.cpp
 CScanMethod.h
 CScanProblem.cpp
 CScanProblem.h
 CScanTask.cpp
 CScanTask.h
 CSEDMLExporter.cpp
 CSEDMLExporter.h
 CSensMethod.cpp
 CSensMethod.h
 CSensProblem.cpp
 CSensProblem.h
 CSensTask.cpp
 CSensTask.h
 CSlider.cpp
 CSlider.h
 CSort.h
 CSparseMatrix.cpp
 CSparseMatrix.h
 CSSAMethod.cpp
 CSSAMethod.h
 CState.cpp
 CState.h
 CStatistics.cpp
 CStatistics.h
 CSteadyStateMethod.cpp
 CSteadyStateMethod.h
 CSteadyStateProblem.cpp
 CSteadyStateProblem.h
 CSteadyStateTask.cpp
 CSteadyStateTask.h
 CStepMatrix.cpp
 CStepMatrix.h
 CStepMatrixColumn.cpp
 CStepMatrixColumn.h
 CStochasticRungeKuttaRI5.cpp
 CStochasticRungeKuttaRI5.h
 CStochDirectMethod.cpp
 CStochDirectMethod.h
 CStochMethod.cpp
 CStochMethod.h
 CStochNextReactionMethod.cpp
 CStochNextReactionMethod.h
 CStructureParser.cpp
 CStructureParser.h
 CTableauLine.cpp
 CTableauLine.h
 CTableauMatrix.cpp
 CTableauMatrix.h
 CTableCell.cpp
 CTableCell.h
 CTaskContext.h
 CTaskEnum.cpp
 CTaskEnum.h
 CTaskFactory.cpp
 CTaskFactory.h
 CTauLeapMethod.cpp
 CTauLeapMethod.h
 CTimeSensLsodaMethod.cpp
 CTimeSensLsodaMethod.h
 CTimeSensMethod.cpp
 CTimeSensMethod.h
 CTimeSensProblem.cpp
 CTimeSensProblem.h
 CTimeSensTask.cpp
 CTimeSensTask.h
 CTimeSeries.cpp
 CTimeSeries.h
 CTrajAdaptiveSA.cpp
 CTrajAdaptiveSA.h
 CTrajectoryMethod.cpp
 CTrajectoryMethod.h
 CTrajectoryMethodDsaLsodar.cpp
 CTrajectoryMethodDsaLsodar.h
 CTrajectoryProblem.cpp
 CTrajectoryProblem.h
 CTrajectoryTask.cpp
 CTrajectoryTask.h
 CTruncatedNewton.cpp
 CTruncatedNewton.h
 CTSSAMethod.cpp
 CTSSAMethod.h
 CTSSAProblem.cpp
 CTSSAProblem.h
 CTSSATask.cpp
 CTSSATask.h
 CubicBezierHandler.cpp
 CubicBezierHandler.h
 CUndoData.cpp
 CUndoData.h
 CUndoObjectInterface.cpp
 CUndoObjectInterface.h
 CUndoStack.cpp
 CUndoStack.h
 CUnit.cpp
 CUnit.h
 CUnitComponent.cpp
 CUnitComponent.h
 CUnitDefinition.cpp
 CUnitDefinition.h
 CUnitDefinitionDB.cpp
 CUnitDefinitionDB.h
 CUnitParser.cpp
 CUnitParser.h
 CUnitParser_lex.cpp
 CUnitParser_yacc.cpp
 CUnitValidator.cpp
 CUnitValidator.h
 CurveHandler.cpp
 CurveHandler.h
 CValidatedUnit.cpp
 CValidatedUnit.h
 CValidity.cpp
 CValidity.h
 CVCard.cpp
 CVCard.h
 CVector.h
 CVersion.cpp
 CVersion.h
 Cxerrwd.cpp
 Cxerrwd.h
 CXMLHandler.cpp
 CXMLHandler.h
 CXMLHandlerFactory.cpp
 CXMLHandlerFactory.h
 CXMLParser.cpp
 CXMLParser.h
 CXMLParserData.cpp
 CXMLParserData.h
 CZeroSet.cpp
 CZeroSet.h
 dbnorm.cpp
 dbnorm.h
 dc_decsol.cpp
 dc_decsol.h
 dcfode.cpp
 dcfode.h
 decsol.cpp
 decsol.h
 dewset.cpp
 dewset.h
 dfnorm.cpp
 dfnorm.h
 dgbfa.h
 dgbsl.h
 dgefa.h
 dgemm.cpp
 dgemm.h
 dgesl.h
 DimensionsHandler.cpp
 DimensionsHandler.h
 dintdy.cpp
 dmnorm.cpp
 dmnorm.h
 dprja.cpp
 drcheck.cpp
 dsolsy.cpp
 dstoda.cpp
 EllipseHandler.cpp
 EllipseHandler.h
 EventHandler.cpp
 EventHandler.h
 Expression2PresentationMML.cpp
 Expression2PresentationMML.h
 Expression2PresentationMMLUnits.cpp
 Expression2PresentationMMLUnits.h
 f2c.h
 FlexLexer.h
 FminBrent.cpp
 FminBrent.h
 FunctionDB.xml.h
 FunctionHandler.cpp
 FunctionHandler.h
 glext.h
 GradientStopHandler.cpp
 GradientStopHandler.h
 GroupHandler.cpp
 GroupHandler.h
 GUIHandler.cpp
 GUIHandler.h
 IdList.h
 ImageHandler.cpp
 ImageHandler.h
 incompatibilities.h
 InitialStateHandler.cpp
 InitialStateHandler.h
 KineticLawHandler.cpp
 KineticLawHandler.h
 lapack.h
 lapackwrap.h
 LayoutHandler.cpp
 LayoutHandler.h
 LinearGradientHandler.cpp
 LinearGradientHandler.h
 LineEndingHandler.cpp
 LineEndingHandler.h
 LineSegmentHandler.cpp
 LineSegmentHandler.h
 ListOfCurveSegmentsHandler.cpp
 ListOfCurveSegmentsHandler.h
 ListOfGradientDefinitionsHandler.cpp
 ListOfGradientDefinitionsHandler.h
 ListOfHandler.cpp
 ListOfHandler.h
 ListOfLayoutsHandler.cpp
 ListOfLayoutsHandler.h
 MathMLHandler.cpp
 MathMLHandler.h
 messages.h
 MetaboliteGlyphHandler.cpp
 MetaboliteGlyphHandler.h
 MetaboliteHandler.cpp
 MetaboliteHandler.h
 MetaboliteReferenceGlyphHandler.cpp
 MetaboliteReferenceGlyphHandler.h
 MethodHandler.cpp
 MethodHandler.h
 MiriamAnnotationHandler.cpp
 MiriamAnnotationHandler.h
 ModelHandler.cpp
 ModelHandler.h
 ModelParameterGroupHandler.cpp
 ModelParameterGroupHandler.h
 ModelParameterHandler.cpp
 ModelParameterHandler.h
 ModelParameterSetHandler.cpp
 ModelParameterSetHandler.h
 ModelValueHandler.cpp
 ModelValueHandler.h
 ModifierHandler.cpp
 ModifierHandler.h
 ObjectHandler.cpp
 ObjectHandler.h
 ParameterDescriptionHandler.cpp
 ParameterDescriptionHandler.h
 ParameterGroupHandler.cpp
 ParameterGroupHandler.h
 ParameterHandler.cpp
 ParameterHandler.h
 ParameterTextHandler.cpp
 ParameterTextHandler.h
 PlotItemHandler.cpp
 PlotItemHandler.h
 PlotSpecificationHandler.cpp
 PlotSpecificationHandler.h
 PointHandler.cpp
 PointHandler.h
 PolygonHandler.cpp
 PolygonHandler.h
 ProductHandler.cpp
 ProductHandler.h
 pvmtest.cpp
 qwt3dBars.cpp
 qwt3dBars.h
 qwt3dColor.cpp
 qwt3dColor.h
 qwt3dPlot.cpp
 qwt3dPlot.h
 qwt3dScale.cpp
 qwt3dScale.h
 RadialGradientHandler.cpp
 RadialGradientHandler.h
 ReactionGlyphHandler.cpp
 ReactionGlyphHandler.h
 ReactionHandler.cpp
 ReactionHandler.h
 RectangleHandler.cpp
 RectangleHandler.h
 RenderCurveElementHandler.cpp
 RenderCurveElementHandler.h
 RenderCurveHandler.cpp
 RenderCurveHandler.h
 RenderInformationHandler.cpp
 RenderInformationHandler.h
 RenderTextHandler.cpp
 RenderTextHandler.h
 ReportDefinitionHandler.cpp
 ReportDefinitionHandler.h
 ReportSectionHandler.cpp
 ReportSectionHandler.h
 ReportTargetHandler.cpp
 ReportTargetHandler.h
 SBMLDocumentLoader.cpp
 SBMLDocumentLoader.h
 SBMLImporter.cpp
 SBMLImporter.h
 SBMLIncompatibility.cpp
 SBMLIncompatibility.h
 SBMLMapHandler.cpp
 SBMLMapHandler.h
 SBMLReference.cpp
 SBMLReference.h
 SBMLUnitSupport.cpp
 SBMLUnitSupport.h
 SBMLUtils.cpp
 SBMLUtils.h
 SBWTranslator.cpp
 SBWTranslator.h
 SEDMLImporter.cpp
 SEDMLImporter.h
 SedmlImportOptions.h
 SEDMLUtils.cpp
 SEDMLUtils.h
 serverShiny.c
 SliderHandler.cpp
 SliderHandler.h
 SourceParameterHandler.cpp
 SourceParameterHandler.h
 StateTemplateHandler.cpp
 StateTemplateHandler.h
 StateTemplateVariableHandler.cpp
 StateTemplateVariableHandler.h
 StdException.cpp
 StdException.h
 StyleHandler.cpp
 StyleHandler.h
 SubstrateHandler.cpp
 SubstrateHandler.h
 TableHandler.cpp
 TableHandler.h
 TaskHandler.cpp
 TaskHandler.h
 TextGlyphHandler.cpp
 TextGlyphHandler.h
 uiShiny.c
 UnitDefinitionHandler.cpp
 UnitDefinitionHandler.h
 UNKNOWNHandler.cpp
 UNKNOWNHandler.h
 UnsupportedAnnotationHandler.cpp
 UnsupportedAnnotationHandler.h
 utility.cpp
 utility.h
 utility_classes.cpp
 utility_classes.h
 wizard.cpp
 wizard.h