CSEDMLExporter.cpp File Reference

#include <sbml/math/FormulaParser.h>
#include <sedml/SedTypes.h>
#include <sbml/SBMLTypes.h>
#include "SEDMLUtils.h"
#include "copasi/sbml/CSBMLExporter.h"
#include "CSEDMLExporter.h"
#include "copasi/trajectory/CTrajectoryTask.h"
#include "copasi/trajectory/CTrajectoryProblem.h"
#include "copasi/scan/CScanTask.h"
#include "copasi/scan/CScanProblem.h"
#include "copasi/utilities/CCopasiException.h"
#include "copasi/utilities/CVersion.h"
#include "copasi/utilities/CCopasiMessage.h"
#include "copasi/utilities/CDirEntry.h"
#include "copasi/utilities/CParameterEstimationUtils.h"
#include "copasi/CopasiDataModel/CDataModel.h"
#include "copasi/plot/COutputDefinitionVector.h"
#include "copasi/plot/CPlotSpecification.h"
#include "copasi/report/CReportDefinition.h"
#include "copasi/model/CModel.h"
#include "copasi/model/CCompartment.h"
#include "copasi/model/CModelValue.h"
#include "copasi/commandline/CLocaleString.h"
#include <algorithm>
#include <tuple>

Macros
#define	SEDML_SET_ID(element, arguments)

Functions
std::string	createUniqueModelFileName (const std::string &dir, const std::string &baseName, const std::string &extension=".xml")

Macro Definition Documentation

SEDML_SET_ID

#define SEDML_SET_ID	(		element,
			arguments
	)

Value:

  {\
    std::ostringstream idStream; idStream << arguments;\
    std::string pVarId = idStream.str();\
    int count = 1;\
    while (mGeneratedIds.find(pVarId) != mGeneratedIds.end())\
      {\
        pVarId = SEDMLUtils::getNextId(idStream.str(), ++count);\
      }\
    mGeneratedIds.insert(pVarId);\
    element->setId(pVarId);\
  }

Export the model and Task to SEDML. The SEDML document is returned as a string and SBML model is copied to sbmldocument parameter. In case of an error, an empty string is returned.

Function Documentation

createUniqueModelFileName()

std::string createUniqueModelFileName	(	const std::string &	dir,
		const std::string &	baseName,
		const std::string &	extension = ".xml"
	)

References CDirEntry::exist(), and CDirEntry::Separator.

Referenced by CSEDMLExporter::exportModelAndTasks().