Added plots and reports for parameter scans to the output assistant.
Only applicable plots and reports are shown in the output assistant by default.
Simulation Engine
Time Scale Separation Analysis can now handle multi compartment models.
The Time Scale Separation Analysis can now be applied to the full as well as the reduced model.
It is now possible to calculate the sensitivities of Eigen values.
Add kinetic function Bi (irreversible) to the builtin functions.
Bug Fixes since COPASI 4.6.33 (development)
Graphical User Interface (CopasiUI)
Fixed crash in the species table when clicking the comportment cell for a newly created model.
Fixed editing problem in the species table when creating a new species in a multi compartment model.
All sub windows are no closed automatically.
Fixed reaction interface to handle reactions with non integer stoichiometries correctly.
Fixed crash when creating a new model and canceling the save of the modified open model.
Fixed crash caused by sliders of a previous model in a single COPASI session.
Modifying sliders in a model triggers the save model dialog when closing COPASI.
Fixed crash caused by notes when creating a new model in an existing COPASI session and inserting a reaction in the reaction table.
Enabled resizing of columns in the EFM results.
Fixed problem caused by an ampersand '&' in an object name in the ODE display.
Enabled the Save button int the Time Scale Separation Analysis result.
Sliders for species are now always displayed in the current selected frame work (concentration or particle number).
The update model button in the optimization and parameter estimation results be have now similar to the update model check box in the task.
Simulation Engine
Improved event detection during cascading events.
The deterministic integration is now only restarted after events if the ODEs have changed discontinuously improving performance and avoiding restart failures.
Improved the modulo operator '%' to handle zero as the second argument.
Fixed Time Scale Separation Analysis methods ILDM and ILDM modified to return the same results as in Build-32
Prevent crash caused by invalid reactions in a CopasiML file.
Fixed unreported numeric overflow in the Ï„-Leap and Adaptive SSA/Ï„-Leap methods.
Fixed Gibson and Bruck method to correctly handle output of non integer particle number as initial values.
Improved error message for invalid parameter intervals in optimization and parameter estimation.
