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Change History | COPASI 4.6.33 (development)

COPASI 4.6.33 (development)

Version 4.6.33 (development)

Release Date: October 7, 2010

New Features since COPASI 4.6 (Build 32)

  • Graphical User Interface (CopasiUI)
    • Notes in text or XHTML format are now available for compartments, species, reactions, global quantities, events, and kinetic functions.
    • Support links in XHTML notes.
    • Support of render informations in graphical model layouts.
  • Simulation Engine
    • Enhanced EFM algorithm performance by applying a new selection criterion before each internal step.
    • Added an stochastic algorithm (Adaptive SSA/Tau-Leap) which dynamically partitions the model into parts simulated by the direct algorithm and the Tau-Leap algorithm.
  • SBML
    • Import SBML Level 3 Version 1.
    • Added SBML notes support for compartments, species, reactions, global quantities, events, and kinetic functions.
    • Added MIRIAM annotation support for events.
    • Support for the SBML Render Extension.

Bug Fixes since COPASI 4.6 (Build 32)

  • Graphical User Interface (CopasiUI)
    • The selected items in the navigation tree do now correspond to the object displayed in the main widget.
    • Fixed a crash caused by not marking any of the check boxes before, during, and after in the plot definition widget.
    • Fixed progress report for the scan task which was not updated during the execution.
    • Fixed crash which could occur in a model with circular calculation dependencies which additionally used sliders.
    • The delete buttons in the tables are now only active when one or more objects are selected.
    • In the steady-state result widget the button to update the model is now working.
    • Fixed crash which occasionally occurred when saving the ODEs in TeX format.
    • Fixed crash caused by saving a model where reports referenced in tasks have been deleted by the user.
    • Enabled scrolling for the rendered mathematical expressions.
  • Simulation Engine
    • Fixed problem in Stochastic Gibson Bruck algorithm which could make COPASI unresponsive.
    • Fixed problem in the MCA task which did not execute the selected sub task when the model was created with a previous version of COPASI.
    • Fixed crash which occasionally occurred when exporting the ODEs to C.