Notes in text or XHTML format are now available for compartments, species, reactions, global quantities, events, and kinetic functions.
Support links in XHTML notes.
Support of render informations in graphical model layouts.
Simulation Engine
Enhanced EFM algorithm performance by applying a new selection criterion before each internal step.
Added an stochastic algorithm (Adaptive SSA/Tau-Leap) which dynamically partitions the model into parts simulated by the direct algorithm and the Tau-Leap algorithm.
SBML
Import SBML Level 3 Version 1.
Added SBML notes support for compartments, species, reactions, global quantities, events, and kinetic functions.
Added MIRIAM annotation support for events.
Support for the SBML Render Extension.
Bug Fixes since COPASI 4.6 (Build 32)
Graphical User Interface (CopasiUI)
The selected items in the navigation tree do now correspond to the object displayed in the main widget.
Fixed a crash caused by not marking any of the check boxes before, during, and after in the plot definition widget.
Fixed progress report for the scan task which was not updated during the execution.
Fixed crash which could occur in a model with circular calculation dependencies which additionally used sliders.
The delete buttons in the tables are now only active when one or more objects are selected.
In the steady-state result widget the button to update the model is now working.
Fixed crash which occasionally occurred when saving the ODEs in TeX format.
Fixed crash caused by saving a model where reports referenced in tasks have been deleted by the user.
Enabled scrolling for the rendered mathematical expressions.
Simulation Engine
Fixed problem in Stochastic Gibson Bruck algorithm which could make COPASI unresponsive.
Fixed problem in the MCA task which did not execute the selected sub task when the model was created with a previous version of COPASI.
Fixed crash which occasionally occurred when exporting the ODEs to C.
