Methods

• Time Course Calculation
• Deterministic Simulation
• Stochastic Simulation
• Hybrid Simulation
• Steady State Calculation
• Metabolic Control Analysis
  • Control Coefficients
  • Summation Theorem
  • Enzyme Kinetics and the Elasticity Coefficients
  • Connectivity Relations
  • Scaling
• Optimization Methods
  • Evolutionary Programming
  • Evolutionary Strategy (SRES)
  • Genetic Algorithm
  • Genetic Algorithm SR
  • Hooke & Jeeves
  • Levenberg - Marquardt
  • Nelder - Mead
  • NL2SOL
  • Particle Swarm
  • Praxis
  • Random Search
  • Simulated Annealing
  • Steepest Descent
  • Truncated Newton
• Lyapunov Exponents Calculation
• Sensitivities Calculation
• Time Scale Separation Methods
  • ILDM (Deuflhard)
  • Modified ILDM
  • CSP