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Change History | COPASI 4.10 (Build 55)

COPASI 4.10 (Build 55)

Version 4.10 (Build 55)

Release Date: May 16, 2013

New Features since COPASI 4.9.45 (Development)

  • Graphical User Interface (CopasiUI)
    • Impproved the cross section task interface to be more intuitive.
  • SBML
    • Enabled export of models which use initial values of species, compartments or global quantities in mathematical expression.

Bug Fixes since COPASI 4.9.45 (Development)

  • Graphical User Interface (CopasiUI)
    • Fixed problem causing a crash in the slider dialog when the tool "Convert to irreversible" was used.
    • Improved performance of large list of sliders on Windows 8.
  • Simulation Engine
    • Fixed problem when loading CopasiML files which contained nested groups.
    • Fixed crash when exporting a model which contained an event without any assignments.
    • Fixed the calculation of the standard deviation and RMS in the parameter task fir the case where the experimental data contained missing values.
    • The subtask of the sensitivity is now always performed with the update model flag set to false.
    • Fixed problem in the result display of the time scale separation task which could lead to a crash if the task itself failed.
    • Fixed problem in the calculation of the Fisher information matrix which ignored the weights in the objective functions.
    • Fixed stochastic simulation to stop if a propensity evaluates to NaN.
    • Fixed problem in the parameter estimation task when validation data was present.
  • SBML
    • Fixed SBML import of function definitions specifying unused variables.
    • Improved import of functions reducing the number of duplicates and simultaneously preserving the name.
    • Improved import of irreversible reactions in which the product contributes to the kinetic law and is listed as a modifier.
    • Create a warning message if the model contains an invalid function definition and cannot be exported.
  • Language Bindings
    • Fixed various crashes in the Java binding caused by the retrieval of non existing objects.