COPASI 4.10 (Build 55)

Version 4.10 (Build 55)

Release Date: May 16, 2013

New Features since COPASI 4.9.45 (Development)

• Graphical User Interface (CopasiUI)
  • Impproved the cross section task interface to be more intuitive.
• SBML
  • Enabled export of models which use initial values of species, compartments or global quantities in mathematical expression.

Bug Fixes since COPASI 4.9.45 (Development)

• Graphical User Interface (CopasiUI)
  • Fixed problem causing a crash in the slider dialog when the tool "Convert to irreversible" was used.
  • Improved performance of large list of sliders on Windows 8.
• Simulation Engine
  • Fixed problem when loading CopasiML files which contained nested groups.
  • Fixed crash when exporting a model which contained an event without any assignments.
  • Fixed the calculation of the standard deviation and RMS in the parameter task fir the case where the experimental data contained missing values.
  • The subtask of the sensitivity is now always performed with the update model flag set to false.
  • Fixed problem in the result display of the time scale separation task which could lead to a crash if the task itself failed.
  • Fixed problem in the calculation of the Fisher information matrix which ignored the weights in the objective functions.
  • Fixed stochastic simulation to stop if a propensity evaluates to NaN.
  • Fixed problem in the parameter estimation task when validation data was present.
• SBML
  • Fixed SBML import of function definitions specifying unused variables.
  • Improved import of functions reducing the number of duplicates and simultaneously preserving the name.
  • Improved import of irreversible reactions in which the product contributes to the kinetic law and is listed as a modifier.
  • Create a warning message if the model contains an invalid function definition and cannot be exported.
• Language Bindings
  • Fixed various crashes in the Java binding caused by the retrieval of non existing objects.