COPASI API  4.16.103
CHybridMethodODE45 Member List

This is the complete list of members for CHybridMethodODE45, including all inherited members.

adaptiveSA enum valueCCopasiMethod
add(CCopasiObject *pObject, const bool &adopt=true)CCopasiContainervirtual
addDirectDependency(const CCopasiObject *pObject)CCopasiObject
addGroup(const std::string &name)CCopasiParameterGroup
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)CCopasiContainerinlineprotected
Array enum valueCCopasiObjectprotected
assertGroup(const std::string &name)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)CCopasiParameterGroupinline
beginIndex() const CCopasiParameterGroup
beginName() const CCopasiParameterGroup
BOOL enum valueCCopasiParameter
buildUpdateSequence(const DataObjectSet &objects, const DataObjectSet &uptoDateObjects, const DataObjectSet &context=DataObjectSet())CCopasiObjectstatic
calculateAmu(size_t rIndex)CHybridMethodODE45protected
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)CCopasiContainer
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)CCopasiMethod
CCopasiObject()CCopasiObjectprotected
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)CCopasiObjectprotected
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)CCopasiObject
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
checkModel(CModel *model)CHybridMethodODE45protected
CHybridMethodODE45(const CCopasiContainer *pParent=NULL)CHybridMethodODE45protected
CHybridMethodODE45(const CHybridMethodODE45 &src, const CCopasiContainer *pParent=NULL)CHybridMethodODE45
cleanup()CHybridMethodODE45protected
clear()CCopasiParameterGroup
clearDirectDependencies()CCopasiObject
clearRefresh()CCopasiObject
CN enum valueCCopasiParameter
CObjectInterface()CObjectInterfaceinline
Container enum valueCCopasiObjectprotected
CoranaWalk enum valueCCopasiMethod
createMethod(CCopasiMethod::SubType subType=CCopasiMethod::deterministic)CTrajectoryMethodstatic
crossSectionMethod enum valueCCopasiMethod
CTrajectoryMethod(const CCopasiMethod::SubType &subType, const CCopasiContainer *pParent=NULL)CTrajectoryMethodprotected
CTrajectoryMethod(const CTrajectoryMethod &src, const CCopasiContainer *pParent=NULL)CTrajectoryMethod
CTrajectoryMethod::createMethod(CCopasiMethod::SubType subType)CHybridMethodODE45friend
DataModel enum valueCCopasiObjectprotected
DataObjectSet typedefCCopasiObject
DataUpdateSequence typedefCCopasiObject
dependsOn(DataObjectSet candidates, const DataObjectSet &context=DataObjectSet()) const CCopasiObject
deterministic enum valueCCopasiMethod
DifferentialEvolution enum valueCCopasiMethod
directMethod enum valueCCopasiMethod
doInverseInterpolation()CHybridMethodODE45protected
doSingleStep(C_FLOAT64 currentTime, C_FLOAT64 endTime)CHybridMethodODE45protected
DOUBLE enum valueCCopasiParameter
DsaLsodar enum valueCCopasiMethod
EFMAlgorithm enum valueCCopasiMethod
EFMBitPatternAlgorithm enum valueCCopasiMethod
EFMBitPatternTreeAlgorithm enum valueCCopasiMethod
elevateChildren()CHybridMethodODE45virtual
EmptyListCCopasiContainerstatic
endIndex() const CCopasiParameterGroup
endName() const CCopasiParameterGroup
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CHybridMethodODE45protected
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)CHybridMethodODE45protectedstatic
EvolutionaryProgram enum valueCCopasiMethod
EXPRESSION enum valueCCopasiParameter
FAILURE enum valueCTrajectoryMethod
fehl_(pEvalF f, const C_INT *neqn, double *y, double *t, double *h__, double *yp, double *f1, double *f2, double *f3, double *f4, double *f5, double *s, double *yrcd)CHybridMethodODE45private
FILE enum valueCCopasiParameter
fireReaction(size_t rIndex)CHybridMethodODE45protected
fireSlowReaction4Hybrid()CHybridMethodODE45protected
Flag enum nameCCopasiObjectprotected
generateReactionTime(size_t rIndex)CHybridMethodODE45protected
GeneticAlgorithm enum valueCCopasiMethod
GeneticAlgorithmSR enum valueCCopasiMethod
getAffects(size_t rIndex)CHybridMethodODE45private
getAllDependencies(DataObjectSet &dependencies, const DataObjectSet &context) const CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const CCopasiContainervirtual
getCN() const CCopasiParametervirtual
getDefaultAtol(const CModel *pModel) const CHybridMethodODE45protected
getDependsOn(size_t rIndex)CHybridMethodODE45private
getDirectDependencies(const DataObjectSet &context=DataObjectSet()) const CCopasiObjectvirtual
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) const CCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) const CCopasiParameterGroup
getIndex(const std::string &name) const CCopasiParameterGroup
getKey(const std::string &name) const CCopasiParameterGroup
getKey(const size_t &index) const CCopasiParameterGroup
CCopasiParameter::getKey() const CCopasiParametervirtual
getName(const size_t &index) const CCopasiParameterGroupvirtual
getObject(const CCopasiObjectName &cn) const CCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) const CCopasiObject
getObjectDataModel()CCopasiObject
getObjectDataModel() const CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const CCopasiParametervirtual
getObjectName() const CCopasiObject
getObjectParent() const CCopasiObject
getObjects() const CCopasiContainervirtual
getObjectType() const CCopasiObject
getParameter(const std::string &name)CCopasiParameterGroup
getParameter(const std::string &name) const CCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) const CCopasiParameterGroup
getPrerequisites() const CCopasiObjectvirtual
getReactionIndex4Hybrid()CHybridMethodODE45protected
getRefresh() const CCopasiObjectvirtual
getRoots() const CTrajectoryMethod
getStochTimeAndIndex(C_FLOAT64 &ds, size_t &rIndex)CHybridMethodODE45protected
getSubType() const CCopasiMethod
getType() const CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const CCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) const CCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) const CCopasiParameterGroup
getUnits() const CCopasiContainervirtual
getUpdateMethod() const CCopasiObject
getValue(const std::string &name) const CCopasiParameterGroup
getValue(const size_t &index) const CCopasiParameterGroup
getValue(const std::string &name)CCopasiParameterGroup
getValue(const size_t &index)CCopasiParameterGroup
CCopasiParameter::getValue() const CCopasiParameter
CCopasiParameter::getValue()CCopasiParameter
getValueObject() const CCopasiContainervirtual
getValuePointer() const CCopasiParametervirtual
getValueReference() const CCopasiParameter
GROUP enum valueCCopasiParameter
Gui enum valueCCopasiObjectprotected
hasCircularDependencies(DataObjectSet &candidates, DataObjectSet &verified, const DataObjectSet &context) const CCopasiObject
hasUpdateMethod() const CCopasiObject
HookeJeeves enum valueCCopasiMethod
Householder enum valueCCopasiMethod
hybrid enum valueCCopasiMethod
HybridGASA enum valueCCopasiMethod
hybridLSODA enum valueCCopasiMethod
hybridODE45 enum valueCCopasiMethod
index_iterator typedefCCopasiParameterGroup
initializeParameter()CHybridMethodODE45private
initMethod(C_FLOAT64 time)CHybridMethodODE45protected
initObjects()CCopasiContainerprotected
INT enum valueCCopasiParameter
integrateDeterministicPart(C_FLOAT64 ds)CHybridMethodODE45protected
INVALID enum valueCCopasiParameter
isArray() const CCopasiObject
isContainer() const CCopasiObject
isDataModel() const CCopasiObject
isMatrix() const CCopasiObject
isNameVector() const CCopasiObject
isNonUniqueName() const CCopasiObject
isPrerequisiteForContext(const CObjectInterface *pObject, const CMath::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const CCopasiObjectvirtual
isReference() const CCopasiObject
isRoot() const CCopasiObject
isSeparator() const CCopasiObject
isStaticString() const CCopasiObject
isValidProblem(const CCopasiProblem *pProblem)CHybridMethodODE45virtual
isValidValue(const C_FLOAT64 &value) const CCopasiParameter
isValidValue(const C_INT32 &value) const CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const CCopasiParameter
isValidValue(const bool &value) const CCopasiParameter
isValidValue(const std::string &value) const CCopasiParameter
isValidValue(const CCopasiObjectName &value) const CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const CCopasiParameter
isValueBool() const CCopasiObject
isValueDbl() const CCopasiObject
isValueInt() const CCopasiObject
isValueInt64() const CCopasiObject
isValueString() const CCopasiObject
isVector() const CCopasiObject
KEY enum valueCCopasiParameter
LevenbergMarquardt enum valueCCopasiMethod
linearNoiseApproximation enum valueCCopasiMethod
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
LSODAR enum valueCCopasiMethod
lyapWolf enum valueCCopasiMethod
mAmuCHybridMethodODE45protected
mAmuOldCHybridMethodODE45protected
mAtolCHybridMethodODE45protected
Matrix enum valueCCopasiObjectprotected
mCalculateSetCHybridMethodODE45protected
mcaMethodReder enum valueCCopasiMethod
mDataCHybridMethodODE45protected
mDefaultAtolCHybridMethodODE45protected
mDGCHybridMethodODE45protected
mDoCorrectionCHybridMethodODE45protected
mDWorkCHybridMethodODE45protected
mEndTimeCHybridMethodODE45protected
mErrorMsgCHybridMethodODE45protected
mFirstMetabIndexCHybridMethodODE45protected
mHasAssignmentsCHybridMethodODE45protected
mHasDetermReactionCHybridMethodODE45protected
mHasStoiReactionCHybridMethodODE45protected
mIFlagCHybridMethodODE45protected
mIWorkCHybridMethodODE45protected
mKeyCCopasiParameterprotected
mLocalBalancesCHybridMethodODE45protected
mLocalSubstratesCHybridMethodODE45protected
mMaxBalanceCHybridMethodODE45protected
mMaxStepsCHybridMethodODE45protected
mMaxStepsReachedCHybridMethodODE45protected
mMetab2ReactCHybridMethodODE45protected
mMetabFlagsCHybridMethodODE45protected
mMethodCHybridMethodODE45protected
mNumReactionsCHybridMethodODE45protected
mNumVariableMetabsCHybridMethodODE45protected
mObjectsCCopasiContainerprotected
mODE45StatusCHybridMethodODE45protected
ModelEntity enum valueCCopasiObjectprotected
modelHasAssignments(const CModel *pModel)CHybridMethodODE45protectedstatic
mOldTimeCHybridMethodODE45protected
mOldYCHybridMethodODE45protected
mOutputCounterCHybridMethodODE45protected
mOutputFileCHybridMethodODE45protected
mOutputFileNameCHybridMethodODE45protected
mpCallBackCCopasiMethodprotected
mpCurrentStateCTrajectoryMethodprotected
mpEventStateCHybridMethodODE45protected
mpInterpolationCHybridMethodODE45protected
mpMetabolitesCHybridMethodODE45protected
mpModelCHybridMethodODE45protected
mpProblemCTrajectoryMethodprotected
mPQCHybridMethodODE45protected
mpRandomGeneratorCHybridMethodODE45protected
mpReactionsCHybridMethodODE45protected
mpStateCHybridMethodODE45protected
mpValueReferenceCCopasiParametermutableprotected
mRandomSeedCHybridMethodODE45protected
mReactAffectCHybridMethodODE45protected
mReactionFlagsCHybridMethodODE45protected
mReducedModelCHybridMethodODE45protected
mRootsCTrajectoryMethodprotected
mRtolCHybridMethodODE45protected
mSizeCCopasiParameterprotected
mStateRecordCHybridMethodODE45protected
mStoiCHybridMethodODE45protected
mTimeCHybridMethodODE45protected
mUpdateSetCHybridMethodODE45protected
mUseRandomSeedCHybridMethodODE45protected
mUseStateRecordCHybridMethodODE45protected
mustBeDeleted(const DataObjectSet &deletedObjects) const CCopasiObjectvirtual
mValueCCopasiParameterprotected
mYCHybridMethodODE45protected
mYdotCHybridMethodODE45protected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCCopasiObjectprotected
NelderMead enum valueCCopasiMethod
Newton enum valueCCopasiMethod
NonUniqueName enum valueCCopasiObjectprotected
NORMAL enum valueCTrajectoryMethod
objectMap typedefCCopasiContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
outputData()CHybridMethodODE45protected
outputDebug(std::ostream &os, size_t level)CHybridMethodODE45protected
outputState(const CState *pS)CHybridMethodODE45protected
parameterGroup typedefCCopasiParameterGroup
ParticleSwarm enum valueCCopasiMethod
Praxis enum valueCCopasiMethod
print(std::ostream *ostream) const CCopasiMethodvirtual
printResult(std::ostream *ostream) const CCopasiMethodvirtual
RandomSearch enum valueCCopasiMethod
RandomSearchMaster enum valueCCopasiMethod
Reference enum valueCCopasiObjectprotected
remove(CCopasiObject *pObject)CCopasiContainervirtual
removeDirectDependency(const CCopasiObject *pObject)CCopasiObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
rkf45_(pEvalF f, const C_INT *neqn, double *y, double *t, double *tout, double *relerr, double *abserr, C_INT *iflag, double *work, C_INT *iwork, double *yrcd)CHybridMethodODE45private
rkfs_(pEvalF f, const C_INT *neqn, double *y, double *t, double *tout, double *relerr, double *abserr, C_INT *iflag, double *yp, double *h__, double *f1, double *f2, double *f3, double *f4, double *f5, double *savre, double *savae, C_INT *nfe, C_INT *kop, C_INT *init, C_INT *jflag, C_INT *kflag, double *yrcd)CHybridMethodODE45private
Root enum valueCCopasiObjectprotected
ROOT enum valueCTrajectoryMethod
scanMethod enum valueCCopasiMethod
ScatterSearch enum valueCCopasiMethod
sensMethod enum valueCCopasiMethod
Separator enum valueCCopasiObjectprotected
setCallBack(CProcessReport *pCallBack)CCopasiMethodvirtual
setCurrentState(CState *currentState)CTrajectoryMethod
setDirectDependencies(const DataObjectSet &directDependencies)CCopasiObject
setObjectName(const std::string &name)CCopasiObject
setObjectParent(const CCopasiContainer *pParent)CCopasiObjectvirtual
setObjectValue(const C_FLOAT64 &value)CCopasiObject
setObjectValue(const C_INT32 &value)CCopasiObject
setObjectValue(const bool &value)CCopasiObject
setProblem(CTrajectoryProblem *problem)CTrajectoryMethod
setRefresh(CType *pType, void(CType::*method)(void))CCopasiObjectinline
setRenameHandler(CRenameHandler *rh)CCopasiObjectinlinestatic
setupBalances()CHybridMethodODE45protected
setupCalculateSet()CHybridMethodODE45protected
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))CCopasiObjectinline
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))CCopasiObjectinline
setupDependencyGraph()CHybridMethodODE45protected
setupMetab2React()CHybridMethodODE45protected
setupMetabFlags()CHybridMethodODE45protected
setupMethod()CHybridMethodODE45protected
setupPriorityQueue(C_FLOAT64 startTime=0.0)CHybridMethodODE45protected
setupReactAffect()CHybridMethodODE45protected
setupReactionFlags()CHybridMethodODE45protected
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
SimulatedAnnealing enum valueCCopasiMethod
size() const CCopasiParameterGroup
smpRenameHandlerCCopasiObjectprotectedstatic
SRES enum valueCCopasiMethod
start(const CState *initialState)CHybridMethodODE45virtual
stateChanged()CTrajectoryMethodvirtual
StaticString enum valueCCopasiObjectprotected
Statistics enum valueCCopasiMethod
Status enum nameCTrajectoryMethod
SteepestDescent enum valueCCopasiMethod
step(const double &deltaT)CHybridMethodODE45virtual
stochastic enum valueCCopasiMethod
STRING enum valueCCopasiParameter
SubType enum nameCCopasiMethod
SubTypeNameCCopasiMethodstatic
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
tauLeap enum valueCCopasiMethod
tempCHybridMethodODE45protected
TruncatedNewton enum valueCCopasiMethod
tssCSP enum valueCCopasiMethod
tssILDM enum valueCCopasiMethod
tssILDMModified enum valueCCopasiMethod
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
UDOUBLE enum valueCCopasiParameter
UINT enum valueCCopasiParameter
unset enum valueCCopasiMethod
updatePriorityQueue(size_t rIndex, C_FLOAT64 time)CHybridMethodODE45protected
UpdateSequence typedefCObjectInterface
updateTauMu(size_t rIndex, C_FLOAT64 time)CHybridMethodODE45protected
ValueBool enum valueCCopasiObjectprotected
ValueDbl enum valueCCopasiObjectprotected
ValueInt enum valueCCopasiObjectprotected
ValueInt64 enum valueCCopasiObjectprotected
ValueString enum valueCCopasiObjectprotected
Vector enum valueCCopasiObjectprotected
XMLSubTypeCCopasiMethodstatic
XMLTypeCCopasiParameterstatic
~CCopasiContainer()CCopasiContainervirtual
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiObject()CCopasiObjectvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CHybridMethodODE45()CHybridMethodODE45
~CObjectInterface()CObjectInterfaceinlinevirtual
~CTrajectoryMethod()CTrajectoryMethod