COPASI API  4.40.278
CHybridMethod Member List

This is the complete list of members for CHybridMethod, including all inherited members.

__SIZE enum valueCDataObject
add(CDataObject *pObject, const bool &adopt=true)CDataContainervirtual
addGroup(const std::string &name)CCopasiParameterGroup
addIssue(const CIssue &issue)CDataObject
addMatrixReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addObjectReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
addParameter(const CCopasiParameter &parameter)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
addParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
addReference(const CDataContainer *pReference)CDataObject
addVectorReference(const std::string &name, CType &reference, const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainerprotected
allocateValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
allocateValue(const Type &type, void *&pValue)CCopasiParameterstatic
appendDeletedDependentData(CUndoData &undoData) constCDataContainervirtual
applyData(const CData &data, CUndoData::CChangeSet &changes)CCopasiParameterGroupvirtual
Array enum valueCDataObject
assertGroup(const std::string &name, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue, const CCopasiParameter::UserInterfaceFlag &flag=CCopasiParameter::UserInterfaceFlag::All)CCopasiParameterGroupinline
assignDefault(const void *pDefault)CCopasiParameterprivate
assignValidValues(const void *pValidValues)CCopasiParameterprivate
assignValue(const Type &type, void *&pValue, const void *pNewValue)CCopasiParameterstatic
assignValue(const void *pValue)CCopasiParameterprivate
beginIndex() constCCopasiParameterGroup
beginName() constCCopasiParameterGroup
calculateDerivative(CVectorCore< C_FLOAT64 > &deriv)CHybridMethodprotected
calculateValue() overrideCDataObjectvirtual
CCopasiMethod()CCopasiMethodprivate
CCopasiMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src)CCopasiMethodprotected
CCopasiMethod(const CCopasiMethod &src, const CDataContainer *pParent)CCopasiMethod
CCopasiParameter(const CCopasiParameter &src)CCopasiParameterprotected
CCopasiParameter()CCopasiParameterprivate
CCopasiParameter(const CCopasiParameter &src, const CDataContainer *pParent)CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="Parameter")CCopasiParameter
CCopasiParameterGroup()CCopasiParameterGroupprotected
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CDataContainer *pParent=NULL)CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &objectType="ParameterGroup")CCopasiParameterGroup
CDataContainer()CDataContainerprivate
CDataContainer(const CDataContainer &src)CDataContainerprotected
CDataContainer(const std::string &name, const CDataContainer *pParent=NO_PARENT, const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataContainer
CDataContainer(const CDataContainer &src, const CDataContainer *pParent)CDataContainer
CDataObject()CDataObjectprotected
CDataObject(const std::string &name, const CDataContainer *pParent=static_cast< CDataContainer * >((void *) 0), const std::string &type="CN", const CFlags< Flag > &flag=CFlags< Flag >::None)CDataObjectprotected
CDataObject(const CDataObject &src, const CDataContainer *pParent=NULL)CDataObject
checkModel(CModel *model)CHybridMethodprotectedstatic
CHybridMethod()CHybridMethodprivate
CHybridMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType=CTaskEnum::Method::hybrid, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)CHybridMethod
CHybridMethod(const CHybridMethod &src, const CDataContainer *pParent)CHybridMethod
cleanup()CHybridMethodprotected
clear()CCopasiParameterGroup
clearCallBack()CCopasiMethodvirtual
CObjectInterface()CObjectInterface
CObjectInterface(const CObjectInterface &src)CObjectInterface
const_name_iterator typedefCCopasiParameterGroup
Container enum valueCDataObject
ContainerList typedefCObjectInterface
createUndoData(CUndoData &undoData, const CUndoData::Type &type, const CData &oldData=CData(), const CCore::Framework &framework=CCore::Framework::ParticleNumbers) constCCopasiParameterGroupvirtual
createValue()CCopasiParameterprivate
CTrajectoryMethod()CTrajectoryMethodprivate
CTrajectoryMethod(const CDataContainer *pParent, const CTaskEnum::Method &methodType, const CTaskEnum::Task &taskType=CTaskEnum::Task::timeCourse)CTrajectoryMethod
CTrajectoryMethod(const CTrajectoryMethod &src, const CDataContainer *pParent)CTrajectoryMethod
CUndoObjectInterface()CUndoObjectInterface
CUndoObjectInterface(const CUndoObjectInterface &src)CUndoObjectInterface
DataModel enum valueCDataObject
DataObject(const CObjectInterface *pInterface)CObjectInterfacestatic
DataObjectSet typedefCDataObject
deleteValidValues(const Type &type, void *&pValidValues)CCopasiParameterstatic
deleteValue(const Type &type, void *&pValue)CCopasiParameterstatic
destruct() overrideCDataObjectvirtual
DisplayName enum valueCDataObject
doSingleStep(C_FLOAT64 currentTime, C_FLOAT64 endTime)CHybridMethodprotected
elements typedefCCopasiParameterGroup
elevateChildren()CHybridMethodvirtual
EmptyListCDataContainerstatic
endIndex() constCCopasiParameterGroup
endName() constCCopasiParameterGroup
eUserInterfaceFlag enum nameCCopasiParameter
FAILURE enum valueCTrajectoryMethod
Flag enum nameCDataObject
fromData(const CData &data, CUndoObjectInterface *pParent)CCopasiParameterstatic
generateReactionTime(size_t rIndex)CHybridMethodprotected
generateUuid()CUndoObjectInterface
getCallBack() constCCopasiMethod
getChildObjectUnits(const CDataObject *pObject) constCDataContainervirtual
getCN() const overrideCCopasiParametervirtual
getDataObject() const overrideCDataObjectvirtual
getDefault() constCCopasiParameterinline
getDescendants(CDataObject::DataObjectSet &descendants, const bool &recursive=false) constCDataContainer
getElementTemplates()CCopasiParameterGroup
getElementTemplates() constCCopasiParameterGroup
getGroup(const std::string &name)CCopasiParameterGroup
getGroup(const std::string &name) constCCopasiParameterGroup
getGroup(const size_t &index)CCopasiParameterGroup
getGroup(const size_t &index) constCCopasiParameterGroup
getIndex(const CDataObject *pObject) constCCopasiParameterGroupvirtual
getIndex(const std::string &name) constCCopasiParameterGroup
getKey(const std::string &name) constCCopasiParameterGroup
getKey(const size_t &index) constCCopasiParameterGroup
CCopasiParameter::getKey() const overrideCCopasiParametervirtual
getMathContainer() constCCopasiMethod
getName(const size_t &index) constCCopasiParameterGroupvirtual
getObject(const CCommonName &cn) constCCopasiParameterGroupvirtual
getObjectAncestor(const std::string &type) constCDataObject
getObjectDataModel() constCDataObject
getObjectDisplayName() const overrideCCopasiParametervirtual
GetObjectFromCN(const ContainerList &listOfContainer, const CCommonName &objName)CObjectInterfacestatic
getObjectFromCN(const CCommonName &cn) constCDataObject
getObjectName() constCDataObject
getObjectParent() constCDataObject
getObjects() constCDataContainervirtual
getObjects()CDataContainervirtual
getObjectType() constCDataObject
getParameter(std::string name)CCopasiParameterGroup
getParameter(std::string name) constCCopasiParameterGroup
getParameter(const size_t &index)CCopasiParameterGroup
getParameter(const size_t &index) constCCopasiParameterGroup
getPrerequisites() const overrideCDataObjectvirtual
getRoots() constCTrajectoryMethod
getStochTimeAndIndex(C_FLOAT64 &ds, size_t &rIndex)CHybridMethodprotected
getSubType() constCCopasiMethod
getType() constCCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) constCCopasiParameterGroup
CCopasiParameterGroup::getType(const size_t &index) constCCopasiParameterGroup
getUniqueParameterName(const CCopasiParameter *pParameter) constCCopasiParameterGroup
getUnits() const overrideCDataContainervirtual
getUserInterfaceFlag() constCCopasiParameter
getUuid() constCUndoObjectInterface
getValidity() const overrideCDataObjectvirtual
getValidValues() constCCopasiParameterinline
getValidValues()CCopasiParameterinline
getValidValuesPointer() constCCopasiParameter
getValue(const std::string &name) constCCopasiParameterGroupinline
getValue(const std::string &name)CCopasiParameterGroupinline
getValue(const size_t &index) constCCopasiParameterGroupinline
getValue(const size_t &index)CCopasiParameterGroupinline
CCopasiParameter::getValue() constCCopasiParameterinline
CCopasiParameter::getValue()CCopasiParameterinline
getValueObject() const overrideCDataContainervirtual
getValuePointer() const overrideCCopasiParametervirtual
getValueReference() constCCopasiParameter
Gui enum valueCDataObject
hasFlag(const Flag &flag) constCDataObject
hasValidValues() constCCopasiParameter
haveTemplate() constCCopasiParameterGroup
HIGH enum valueCHybridMethodprotected
index_iterator typedefCCopasiParameterGroup
initializeParameter()CHybridMethodprivate
initObjects()CDataContainerprotected
insert(const CData &data)CCopasiParameterGroupvirtual
insertDeterministicReaction(size_t rIndex)CHybridMethodprotected
integrateDeterministicPart(C_FLOAT64 ds)=0CHybridMethodprotectedpure virtual
integrateReducedModel() constCTrajectoryMethod
inValidValues(const CType &value) constCCopasiParameterinlineprivate
isBasic() constCCopasiParameter
isDefault() constCCopasiParameter
isEditable() constCCopasiParameter
isPrerequisiteForContext(const CObjectInterface *pObject, const CCore::SimulationContextFlag &context, const CObjectInterface::ObjectSet &changedObjects) const overrideCDataObjectvirtual
isUnsupported() constCCopasiParameter
isValidProblem(const CCopasiProblem *pProblem)CHybridMethodvirtual
isValidValue(const C_FLOAT64 &value) constCCopasiParameter
isValidValue(const C_INT32 &value) constCCopasiParameter
isValidValue(const unsigned C_INT32 &value) constCCopasiParameter
isValidValue(const bool &value) constCCopasiParameter
isValidValue(const std::string &value) constCCopasiParameter
isValidValue(const CCommonName &value) constCCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) constCCopasiParameter
isValidValue(const CType &) constCCopasiParameterinline
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)CCopasiMethodvirtual
LOW enum valueCHybridMethodprotected
mAggregateValidityCDataObjectprivate
mAmuCHybridMethodprotected
mAmuOldCHybridMethodprotected
Matrix enum valueCDataObject
mContainerStateCTrajectoryMethodprotected
mCurrentStateCHybridMethodprotected
mDGCHybridMethodprotected
metabStatus enum nameCHybridMethodprotected
mFirstMetabIndexCHybridMethodprotected
mFirstReactionFlagCHybridMethodprotected
mKeyCCopasiParameterprotected
mLowerStochLimitCHybridMethodprotected
mMaxBalanceCHybridMethodprotected
mMaxIntBeforeStepCHybridMethodprotected
mMaxStepsCHybridMethodprotected
mMaxStepsReachedCHybridMethodprotected
mMetab2ReactCHybridMethodprotected
mMetabFlagsCHybridMethodprotected
mNumVariableMetabsCHybridMethodprotected
mObjectDisplayNameCDataObjectmutableprivate
mObjectFlagCDataObjectprivate
mObjectNameCDataObjectprivate
mObjectsCDataContainerprotected
mObjectTypeCDataObjectprivate
ModelEntity enum valueCDataObject
mPartitioningIntervalCHybridMethodprotected
mpContainerCCopasiMethodprotected
mpContainerStateTimeCTrajectoryMethodprotected
mpDefaultCCopasiParameterprotected
mpElementTemplatesCCopasiParameterGroupprivate
mpFirstMetabValueCHybridMethodprotected
mpObjectDisplayNameCDataObjectmutableprivate
mpObjectNameCDataObjectmutableprivate
mpObjectParentCDataObjectprivate
mpProblemCTrajectoryMethodprotected
mPQCHybridMethodprotected
mpRandomGeneratorCHybridMethodprotected
mpReducedModelCTrajectoryMethodprotected
mPrerequisitsCDataObjectprotected
mProcessReportCCopasiMethodprotected
mpTaskCTrajectoryMethodprotected
mpUuidCUndoObjectInterfaceprivate
mpValidValuesCCopasiParameterprotected
mpValueCCopasiParameterprotected
mpValueReferenceCCopasiParametermutableprotected
mRandomSeedCHybridMethodprotected
mRateOffsetCHybridMethodprotected
mReactionFlagsCHybridMethodprotected
mReactionsCHybridMethodprotected
mReferencedValiditiesCDataObjectprivate
mReferencesCDataObjectprotected
mRootsFoundCTrajectoryMethodprotected
mSpeciesRatesCHybridMethodprotected
mStepsAfterPartitionSystemCHybridMethodprotected
mSubTypeCCopasiMethodprivate
mTaskTypeCCopasiMethodprivate
mTypeCCopasiParameterprivate
mUpdateSequencesCHybridMethodprotected
mUpperStochLimitCHybridMethodprotected
mUseRandomSeedCHybridMethodprotected
mUserInterfaceFlagCCopasiParameterprotected
mUuidLockedCUndoObjectInterfaceprivate
mValidityCObjectInterfacemutableprotected
name_iterator typedefCCopasiParameterGroup
NameVector enum valueCDataObject
NonUniqueName enum valueCDataObject
NORMAL enum valueCTrajectoryMethod
objectMap typedefCDataContainer
objectRenamed(CDataObject *pObject, const std::string &oldName)CDataContainer
ObjectSet typedefCObjectInterface
operator=(const CCopasiMethod &rhs)CCopasiMethod
CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs)CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)CCopasiParameter
output(const bool &useMoieties)CTrajectoryMethodprotected
partitionSystem()CHybridMethodprotected
prerequisitsContains(const DataObjectSet &objects) constCDataObject
print(std::ostream *ostream) constCCopasiMethodvirtual
printResult(std::ostream *ostream) constCCopasiMethodvirtual
ReducedModelCTrajectoryMethodprotectedstatic
Reference enum valueCDataObject
refreshAggregateValidity()CDataObjectprivate
remove(CDataObject *pObject)CCopasiParameterGroupvirtual
removeDeterministicReaction(size_t rIndex)CHybridMethodprotected
removeIssue(const CIssue &issue)CDataObject
removeParameter(const std::string &name)CCopasiParameterGroup
removeParameter(const size_t &index)CCopasiParameterGroup
removeParameter(CCopasiParameter *pParameter)CCopasiParameterGroup
removeReference(const CDataContainer *pReference)CDataObject
ROOT enum valueCTrajectoryMethod
Root enum valueCDataObject
sanitizeObjectName(std::string &name)CDataObjectstatic
Separator enum valueCDataObject
setCallBack(CProcessReportLevel callBack)CCopasiMethodvirtual
setDefault(const CType &defaultValue)CCopasiParameterinline
setDefault(const std::vector< CCopasiParameter * > &defaultValue)CCopasiParameter
setMathContainer(CMathContainer *pContainer)CCopasiMethod
setObjectName(const std::string &name)CDataObject
setObjectParent(const CDataContainer *pParent) overrideCCopasiParametervirtual
setProblem(CTrajectoryProblem *problem)CTrajectoryMethod
setupDependencyGraph()CHybridMethodprotected
setupMetab2React()CHybridMethodprotected
setupPartition()CHybridMethodprotected
setupPriorityQueue()CHybridMethodprotected
setUserInterfaceFlag(const UserInterfaceFlag &flag)CCopasiParameterGroupvirtual
setUuid(const xg::Guid &uuid)CUndoObjectInterface
setUuid(const std::string &uuid)CUndoObjectInterface
setValidValues(const std::vector< std::pair< CType, CType > > &validValues)CCopasiParameterinline
setValidValues(const CEnumAnnotation< CType, Enum > &validValues)CCopasiParameterinline
setValue(const std::string &name, const CType &value)CCopasiParameterGroupinline
setValue(const size_t &index, const CType &value)CCopasiParameterGroupinline
CCopasiParameter::setValue(const CType &value)CCopasiParameterinline
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)CCopasiParameter
signalMathContainerChanged()CTrajectoryMethodprotectedvirtual
size(const UserInterfaceFlag &require=UserInterfaceFlag::None, const UserInterfaceFlag &exclude=UserInterfaceFlag::None) constCCopasiParameterGroup
start()CHybridMethodvirtual
stateChange(const CMath::StateChange &change)CTrajectoryMethodvirtual
StaticString enum valueCDataObject
Status enum nameCTrajectoryMethod
step(const double &deltaT, const bool &final=false)CHybridMethodvirtual
swap(const size_t &iFrom, const size_t &iTo)CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)CCopasiParameterGroup
toData() constCCopasiParameterGroupvirtual
Type enum nameCCopasiParameter
TypeNameCCopasiParameterstatic
updateIndex(const size_t &index, const CUndoObjectInterface *pUndoObject)CCopasiParameterGroupvirtual
updatePriorityQueue(size_t rIndex, C_FLOAT64 time)CHybridMethodprotected
updateTauMu(size_t rIndex, C_FLOAT64 time)CHybridMethodprotected
UserInterfaceFlag typedefCCopasiParameter
validityChanged(const CValidity &changedValidity) overrideCDataObjectvirtual
validityRemoved(const CValidity &changedValidity)CDataObject
ValueBool enum valueCDataObject
ValueDbl enum valueCDataObject
ValueInt enum valueCDataObject
ValueInt64 enum valueCDataObject
ValueString enum valueCDataObject
Vector enum valueCDataObject
XMLTypeCCopasiParameterstatic
~CCopasiMethod()CCopasiMethodvirtual
~CCopasiParameter()CCopasiParametervirtual
~CCopasiParameterGroup()CCopasiParameterGroupvirtual
~CDataContainer()CDataContainervirtual
~CDataObject()CDataObjectvirtual
~CHybridMethod()CHybridMethod
~CObjectInterface()CObjectInterfacevirtual
~CTrajectoryMethod()CTrajectoryMethod
~CUndoObjectInterface()CUndoObjectInterfacevirtual